EWM28415.1, cds2266 (CDS) Nannochloropsis gaditana

Overview
NameEWM28415.1
Unique Namecds2266
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1357082..1358371 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28415.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100088g4.1234.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1357082..1358371 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28415.1 vs. NCBI_GenBank
Match: gi|585110800|gb|EWM28415.1| (hypothetical protein Naga_100088g4 [Nannochloropsis gaditana])

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0 
Query:    1 MPLRFPPYSLLPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLVADERLAASEENTRHGVGEEARRLQERVADLEEALEEERVRGIKVENDWKFVVRDLHRQLREPTPPERCPHADSMAPGIGAEAEEMAATARDQSLRREERQEEDLRAMTLLREELEKVKLRSMLAIQKAERRADAYKSKCLELHERWKEGSVVGRL 429
            MPLRFPPYSLLPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLVADERLAASEENTRHGVGEEARRLQERVADLEEALEEERVRGIKVENDWKFVVRDLHRQLREPTPPERCPHADSMAPGIGAEAEEMAATARDQSLRREERQEEDLRAMTLLREELEKVKLRSMLAIQKAERRADAYKSKCLELHERWKEGSVVGRL
Sbjct:    1 MPLRFPPYSLLPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLVADERLAASEENTRHGVGEEARRLQERVADLEEALEEERVRGIKVENDWKFVVRDLHRQLREPTPPERCPHADSMAPGIGAEAEEMAATARDQSLRREERQEEDLRAMTLLREELEKVKLRSMLAIQKAERRADAYKSKCLELHERWKEGSVVGRL 429
[Close]
BLAST of EWM28415.1 vs. NCBI_GenBank
Match: gi|553188418|ref|XP_005854792.1| (hypothetical protein NGA_2055900, partial [Nannochloropsis gaditana CCMP526] >gi|422294268|gb|EKU21568.1| hypothetical protein NGA_2055900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 489.189 bits (1258), Expect = 2.405e-171
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0 
Query:   11 LPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLV 274
            LPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLV
Sbjct:    1 LPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLV 264
The following BLAST results are available for this feature:
BLAST of EWM28415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110800|gb|EWM28415.1|0.000e+0100.00hypothetical protein Naga_100088g4 [Nannochloropsi... [more]
gi|553188418|ref|XP_005854792.1|2.405e-171100.00hypothetical protein NGA_2055900, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2274rna2274Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications