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Properties
| Property Name | Value |
|---|
| Product | 5 ampactivated protein kinase subunit beta |
| Orig transcript id | gnl|cribi|Naga_100088g6.1237.mrna |
| Orig protein id | gnl|cribi|Naga_100088g6.1237 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1352583..1354145 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2273 ID=rna2273|Name=rna2273|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ATGGTCGGCAGGCAAGCCCTCCCATGGGAGTGCGGGCATCGCCTGTGCCC
CCGAGGGGGGGGCGAGGGCGCAGCTGAGGCGACCGGCAGCCAGGAGGCCC
GGGCAGACGAATCAATCATCACACATGACATCCTAATTAATGGAGACAAG
ACTAGGAAAGATGGTAGCAGCACAGGTAGCTGCGGCAGTATCGGGGCAGT
GACGCAAGGCAATGGCGGCAAGGGCAAGCGTGCAAGGACATTGTCCAAGG
CCAAGAGAAAAAGAAAGGAGCCTGGAGCAAACAAGGGAATTGTATTGCGT
GTGCTGCTTGATCCACATCTGTCGCTACTGCCCGCCGGCGCCGTCCCTTT
CCTCTCGCACCTTCAAATTCGCGGCTCCCAGCATACCCGGGATGCCAGTG
AGCTCCCTCAAGTCGTCAGCAGCCCTCCCTCAAGAAGTACTGAAATGGAC
TATGCCACAAACAGAGTCCTCGATATTCATGGATTTTCAATACCAGAGCA
TACGCATACTGTGGAGGCCTCCCTGGAACAGGAGCAGCGTCAGTGTACAA
GGAGAAAATTGACGAATGAAGATGGGGACAAGAAGGTGCTGAGCATGAGC
TTTCAAACCGATCCGAATCAGGACAAACGCATCGATGTGGTCAGCGCTCA
AAACGACAGAGCTCTGAATAAGACTGTTAACATCATATTTGCTGTATAAA
GGTAGAGCTTTAGCCTGCACTGCCAGAGTGGAGATGAAGTCGTAATTTTA
GACTTGACGGCAATAATGGACCCGCACACTGGCTGCAGTGCAGCCTGCAG
AAGATGTATATTTGTGCACAGGTAGTGCACACGCCTGCATTTTTTAATCA
ATAAGCAACCATGCCGAAAATCAATCTATGAAACA back to topprotein sequence of rna2273 >rna2273-protein ID=rna2273-protein|Name=rna2273|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDG
GYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDG
DDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLK
RGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLD
IARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPV
PQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP back to topmRNA from alignment at CM002458.1:1352583..1354145+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2273 ID=rna2273|Name=rna2273|organism=Nannochloropsis gaditana|type=mRNA|length=1563bp|location=Sequence derived from alignment at CM002458.1:1352583..1354145+ (Nannochloropsis gaditana)
CGGTCGCCCCCTGGCCTTGGGAGCTTGATGATGCTTTCAACCCTCTTCAA
AGTTGTGCATGACCTCGAATTTCCAAGCGATCATACCGTCGGCTTTTTCA
AAGCCAGTGATGATGACTGCCATTActgaagggcggggagcccAAGGCCG
TGCTCGTACGTTTCCTTCACCCGCCCTTTTCTAACGCATGCATCCTGTCC
CCGAAATCGTGCACAAGCCAGAGCGAAGCTATGGGAAATTTCGCAGGCAA
GGATGATAGCGGCGAGAtgcgggaaggacggggagggagcggttTGGACG
AAAGCCAAGGAAAGATTCCACCGCCCACCGAATTTCACCATCGCCGGGAA
CCAGGGGGGCGTcccggaggacgagacggTGGAtatggtggggaggaagg
aggttctGGGATCGGAGGAGCGCACACACCGACGAGCGTAGGTCCTGGAC
CGCCGTCTTCAGGGGCGCTGGTACtgacgggggcggagaggggcgcTGAG
GGGGCCGGGGACGAGATGGCAATTGACGGAGACGATAGAGAGGACGATGT
AGTGCCCACTGTCTTCCGGTGGGAGCATGGGGGCCGCCAGGTGCGTTGCA
TGATAGAAGAAGAAACCTGGGACAGTGATGGGCTTAAAACTGTACAacca
ggaagggggaggcgcaTTCATCGAGGAGAAGTAAGACGTTTCCATCTTTC
CTTTACTTGGTAGGTATATATTCAAGGGACATTTAACAACTGGGAGCGGC
AGATTCCCATGCATCGGAGCGGAAATGACTTCATGTACATCCATAACCTG
AAGCGCGGCAAGCATGTAGGTTGGAGCGCttggatgggaggaagaggttg
ggGTTCTGAGTGATCGCGTGAAAGGGGAGCTGCCGGAGAAATAGGAGCCC
ATGCAACGTCCCGCAGTCCTCATAAGAACTGCTAACCCCCGTCATCCAGG
CCTTCAAGTTCATTGTCGACGATGAGTGGCGCTTCGCCCCCGATCAGCTC
ACGGTGGCTGACGTGGAGGGTCGCATCAACAACTTCATCGACGTCACGCA
CTTCAAGCCCTTCAACGAGGACTCCTCTACCCTCGACATCGCacgcaaag
aggaggagctctaCGGCACAAGCTATCCGGATATAGAGGAGTACAGTGTG
AAGGAGCcccctccactgccgccCCACCTGCGTCACATCATCCTCAATAA
GGTACGGAGAGAAAATAAACGTCGCAGTCCTACTGCCCGATTCCACTTCC
CGCTTGTTTTGAAGGGGTGAAGAGTATATTTATAAGTTTTGGACATGATC
ACTTTTGATTAATCTTGTCTGCGGGTAATTCGTCCTAAATTTTTTCCATT
AGGTGCCAAATGACAAGCATCCGCTTATCCTCCCTGTGCCGCAGCACGTT
GCCGTCGACCATCTTTACTGTACTGCCATCAAGGACGGGATGATGGTTTT
GGGGGTCACGCAGCGTTTTCGCATGAAGTTTGTCACAACTGTCTATTATT
CGATGATGCCTTGAGAAGAAATTTTGTCTAGAGCAAAGGAACAAACTACC
ACATAGCAACTTC back to topCoding sequence (CDS) from alignment at CM002458.1:1352583..1354145+ >rna2273 ID=rna2273|Name=rna2273|organism=Nannochloropsis gaditana|type=CDS|length=3504bp|location=Sequence derived from alignment at CM002458.1:1352583..1354145+ (Nannochloropsis gaditana)
ATGGGAAATTTCGCAGGCAAGGATGATAGCGGCGAGAtgcgggaaggacg
gggagggagcggttTGGACGAAAGCCAAGGAAAGATTCCACCGCCCACCG
AATTTCACCATCGCCGGGAACCAGGGGGGCGTcccggaggacgagacggT
GGAtatggtggggaggaaggaggttctGGGATCGGAGGAGCGCACACACC
GACGAGCGTAGGTCCTGGACCGCCGTCTTCAGGGGCGCTGGTACtgacgg
gggcggagaggggcgcTGAGGGGGCCGGGGACGAGATGGCAATTGACGGA
GACGATAGAGAGGACGATGTAGTGCCCACTGTCTTCCGGTGGGAGCATGG
GGGCCGCCAGGTATATATTCAAGGGACATTTAACAACTGGGAGCGGCAGA
TTCCCATGCATCGGAGCGGAAATGACTTCATGTACATCCATAACCTGAAG
CGCGGCAAGCATGCCTTCAAGTTCATTGTCGACGATGAGTGGCGCTTCGC
CCCCGATCAGCTCACGGTGGCTGACGTGGAGGGTCGCATCAACAACTTCA
TCGACGTCACGCACTTCAAGCCCTTCAACGAGGACTCCTCTACCCTCGAC
ATCGCacgcaaagaggaggagctctaCGGCACAAGCTATCCGGATATAGA
GGAGTACAGTGTGAAGGAGCcccctccactgccgccCCACCTGCGTCACA
TCATCCTCAATAAGGTGCCAAATGACAAGCATCCGCTTATCCTCCCTGTG
CCGCAGCACGTTGCCGTCGACCATCTTTACTGTACTGCCATCAAGGACGG
GATGATGGTTTTGGGGGTCACGCAGCGTTTTCGCATGAAGTTTGTCACAA
CTGTCTATTATTCGATGATGCCTTGAATGGGAAATTTCGCAGGCAAGGAT
GATAGCGGCGAGAtgcgggaaggacggggagggagcggttTGGACGAAAG
CCAAGGAAAGATTCCACCGCCCACCGAATTTCACCATCGCCGGGAACCAG
GGGGGCGTcccggaggacgagacggTGGAtatggtggggaggaaggaggt
tctGGGATCGGAGGAGCGCACACACCGACGAGCGTAGGTCCTGGACCGCC
GTCTTCAGGGGCGCTGGTACtgacgggggcggagaggggcgcTGAGGGGG
CCGGGGACGAGATGGCAATTGACGGAGACGATAGAGAGGACGATGTAGTG
CCCACTGTCTTCCGGTGGGAGCATGGGGGCCGCCAGGTATATATTCAAGG
GACATTTAACAACTGGGAGCGGCAGATTCCCATGCATCGGAGCGGAAATG
ACTTCATGTACATCCATAACCTGAAGCGCGGCAAGCATGCCTTCAAGTTC
ATTGTCGACGATGAGTGGCGCTTCGCCCCCGATCAGCTCACGGTGGCTGA
CGTGGAGGGTCGCATCAACAACTTCATCGACGTCACGCACTTCAAGCCCT
TCAACGAGGACTCCTCTACCCTCGACATCGCacgcaaagaggaggagctc
taCGGCACAAGCTATCCGGATATAGAGGAGTACAGTGTGAAGGAGCcccc
tccactgccgccCCACCTGCGTCACATCATCCTCAATAAGGTGCCAAATG
ACAAGCATCCGCTTATCCTCCCTGTGCCGCAGCACGTTGCCGTCGACCAT
CTTTACTGTACTGCCATCAAGGACGGGATGATGGTTTTGGGGGTCACGCA
GCGTTTTCGCATGAAGTTTGTCACAACTGTCTATTATTCGATGATGCCTT
GAATGGGAAATTTCGCAGGCAAGGATGATAGCGGCGAGAtgcgggaagga
cggggagggagcggttTGGACGAAAGCCAAGGAAAGATTCCACCGCCCAC
CGAATTTCACCATCGCCGGGAACCAGGGGGGCGTcccggaggacgagacg
gTGGAtatggtggggaggaaggaggttctGGGATCGGAGGAGCGCACACA
CCGACGAGCGTAGGTCCTGGACCGCCGTCTTCAGGGGCGCTGGTACtgac
gggggcggagaggggcgcTGAGGGGGCCGGGGACGAGATGGCAATTGACG
GAGACGATAGAGAGGACGATGTAGTGCCCACTGTCTTCCGGTGGGAGCAT
GGGGGCCGCCAGGTATATATTCAAGGGACATTTAACAACTGGGAGCGGCA
GATTCCCATGCATCGGAGCGGAAATGACTTCATGTACATCCATAACCTGA
AGCGCGGCAAGCATGCCTTCAAGTTCATTGTCGACGATGAGTGGCGCTTC
GCCCCCGATCAGCTCACGGTGGCTGACGTGGAGGGTCGCATCAACAACTT
CATCGACGTCACGCACTTCAAGCCCTTCAACGAGGACTCCTCTACCCTCG
ACATCGCacgcaaagaggaggagctctaCGGCACAAGCTATCCGGATATA
GAGGAGTACAGTGTGAAGGAGCcccctccactgccgccCCACCTGCGTCA
CATCATCCTCAATAAGGTGCCAAATGACAAGCATCCGCTTATCCTCCCTG
TGCCGCAGCACGTTGCCGTCGACCATCTTTACTGTACTGCCATCAAGGAC
GGGATGATGGTTTTGGGGGTCACGCAGCGTTTTCGCATGAAGTTTGTCAC
AACTGTCTATTATTCGATGATGCCTTGAATGGGAAATTTCGCAGGCAAGG
ATGATAGCGGCGAGAtgcgggaaggacggggagggagcggttTGGACGAA
AGCCAAGGAAAGATTCCACCGCCCACCGAATTTCACCATCGCCGGGAACC
AGGGGGGCGTcccggaggacgagacggTGGAtatggtggggaggaaggag
gttctGGGATCGGAGGAGCGCACACACCGACGAGCGTAGGTCCTGGACCG
CCGTCTTCAGGGGCGCTGGTACtgacgggggcggagaggggcgcTGAGGG
GGCCGGGGACGAGATGGCAATTGACGGAGACGATAGAGAGGACGATGTAG
TGCCCACTGTCTTCCGGTGGGAGCATGGGGGCCGCCAGGTATATATTCAA
GGGACATTTAACAACTGGGAGCGGCAGATTCCCATGCATCGGAGCGGAAA
TGACTTCATGTACATCCATAACCTGAAGCGCGGCAAGCATGCCTTCAAGT
TCATTGTCGACGATGAGTGGCGCTTCGCCCCCGATCAGCTCACGGTGGCT
GACGTGGAGGGTCGCATCAACAACTTCATCGACGTCACGCACTTCAAGCC
CTTCAACGAGGACTCCTCTACCCTCGACATCGCacgcaaagaggaggagc
tctaCGGCACAAGCTATCCGGATATAGAGGAGTACAGTGTGAAGGAGCcc
cctccactgccgccCCACCTGCGTCACATCATCCTCAATAAGGTGCCAAA
TGACAAGCATCCGCTTATCCTCCCTGTGCCGCAGCACGTTGCCGTCGACC
ATCTTTACTGTACTGCCATCAAGGACGGGATGATGGTTTTGGGGGTCACG
CAGCGTTTTCGCATGAAGTTTGTCACAACTGTCTATTATTCGATGATGCC
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