EWM28418.1, cds2265 (CDS) Nannochloropsis gaditana

Overview
NameEWM28418.1
Unique Namecds2265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1352813..1353172 +
Alignment locationCM002458.1:1353296..1353397 +
Alignment locationCM002458.1:1353532..1353783 +
Alignment locationCM002458.1:1353935..1354096 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28418.1
Product5 ampactivated protein kinase subunit beta
Orig transcript idgnl|cribi|Naga_100088g6.1237.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1352813..1353172 +
CM002458.1supercontigCM002458.1:1353296..1353397 +
CM002458.1supercontigCM002458.1:1353532..1353783 +
CM002458.1supercontigCM002458.1:1353935..1354096 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0006464cellular protein modification process
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR006828ASC_dom
Homology
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|585110803|gb|EWM28418.1| (5 ampactivated protein kinase subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
            MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP
Sbjct:    1 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|299470399|emb|CBN80160.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 267.7 bits (683), Expect = 5.731e-86
Identity = 157/279 (56.27%), Postives = 187/279 (67.03%), Query Frame = 0
Query:   33 TEFHHRREPGGRPGGRDGGYGGEE----GGSGIGGAHTPTSVGPGPPSSGALVLTG--------AERGAEGA-GDEMAI----DGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEEL---YGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
            ++F+  ++  G P    GG+   +         GG    T   P P   G   L G        A  GAEG  GD M +    D  + E+++VPTVFRWEHGGRQVYI GTFNNWE+QIPMHRSGNDF YIH LK+GKHAFKFIVDDEWRFAPDQ TVAD+EGR+NNFIDV+ F  +  + +      K+ E    Y    PD++EY+ KEPPPLPPHLRHIILNK P    P  LPVPQHVA++HLYCTAIKDGMMVLG+T+R++ KFVTTVYYS MP
Sbjct:    4 SQFNSSKDGEGGPDREGGGFSDYQQTRTAAGAPGGFSDATFAPPVPMGDGRRHLYGGVASRDGTARPGAEGPPGDAMDVEAKADEGEEEEELVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRLKQLEANDKYSQCTPDLDEYT-KEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMP 281          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1072231562|gb|OEU16294.1| (AMPKBI-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 266.159 bits (679), Expect = 2.127e-84
Identity = 141/224 (62.95%), Postives = 158/224 (70.54%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNED--------------------------------------SSTLDIA-RKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288
            +DD VPTVFRWEHGGRQVYI GTFN W RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FKP+  D                                      SS L+    K+ E++  + PD++EY+ KEPPPLPPHLRHIILNK P  +    LPVPQHVA++HLYCTAIKD MMVLG+TQR++ KFVTTVYYS
Sbjct:  122 DDDTVPTVFRWEHGGRQVYITGTFNGWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTDFKPYTGDREFEKEKAAADYGFISDDEEETTPATSGSDGKDSSGDGSSNLNAGPDKDGEVFSQTMPDMDEYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 344          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|224000489|ref|XP_002289917.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975125|gb|EED93454.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 263.848 bits (673), Expect = 8.400e-84
Identity = 136/214 (63.55%), Postives = 153/214 (71.50%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNED-----------------------------SSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288
            E+D VPTVFRWEHGGR VYI GTFN W RQIPMHRSGNDF YIHNL+RGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK +  D                             SS      ++ E+YG + PD++EY+ KEPPPLPPHLRHIILNK P  +    LPVPQHVA++HLYCTAIKD MMVLG+TQR++ K  TTVYYS
Sbjct:  110 EEDTVPTVFRWEHGGRNVYITGTFNGWSRQIPMHRSGNDFTYIHNLRRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTDFKAYTGDREFEKERAAADYGSADSNDKPSAEGDETSSSGKKTGDRDGEVYGHAMPDLDEYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKSCTTVYYS 322          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|325193017|emb|CCA27392.1| (5'AMPactivated protein kinase subunit beta putative [Albugo laibachii Nc14])

HSP 1 Score: 263.077 bits (671), Expect = 1.505e-83
Identity = 130/206 (63.11%), Postives = 157/206 (76.21%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKE------------------EELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
            E+DVVP VFRWEHGGR V I GTFNNW +Q+PMHRSGNDF+YI NL RGKHA+KF+VDDEWR APDQLTVAD++G +NN++DV+ F P + D   L+ A+ E                  EE YG   PD++EY+ KEPPPLPPHLRHIILNK P      +LP+PQHVA++HLYCTAIKDGMM+LG+TQR++ KFVTTVYYS+MP
Sbjct:  121 EEDVVPMVFRWEHGGRNVCITGTFNNWSKQMPMHRSGNDFVYITNLSRGKHAYKFVVDDEWRSAPDQLTVADLDGNVNNYVDVSDFIPLS-DIEALEKAQGEDSDKDENCMEQDARGTHREEFYGRYIPDVDEYT-KEPPPLPPHLRHIILNKAPPTIDSRLLPIPQHVALNHLYCTAIKDGMMILGITQRYKQKFVTTVYYSLMP 324          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1210524839|dbj|GAX16348.1| (5'-AMP-activated protein kinase, regulatory beta subunit [Fistulifera solaris])

HSP 1 Score: 261.536 bits (667), Expect = 1.685e-83
Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-------------------------------NEDSSTLDIARKEE----ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288
            +DD VPTVFRWEHGGRQVYI GTFNNW RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK +                               ++D++T    +K+     E++    PD+++Y+ KEPPPLPPHLRHIILNK P  +    LPVPQHVA++HLYCTAI+D MMVLG+TQR++ KFVTTVYYS
Sbjct:   61 DDDAVPTVFRWEHGGRQVYITGTFNNWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTGFKAYTGDKTFETERTAAMYGKTIVSVPSADSDGDLSDDNATTGSLKKQPDQDGEVFSNLMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIRDNMMVLGITQRYKTKFVTTVYYS 279          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1210512698|dbj|GAX28288.1| (5'-AMP-activated protein kinase, regulatory beta subunit [Fistulifera solaris])

HSP 1 Score: 260.766 bits (665), Expect = 2.696e-83
Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-------------------------------NEDSSTLDIARKEE----ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288
            +DD VPTVFRWEHGGRQVYI GTFNNW RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK +                               ++D++T    +K+     E++    PD+++Y+ KEPPPLPPHLRHIILNK P  +    LPVPQHVA++HLYCTAI+D MMVLG+TQR++ KFVTTVYYS
Sbjct:   55 DDDAVPTVFRWEHGGRQVYITGTFNNWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTGFKAYTGDKTFETERTAAMYGKTIVSVPSADSDGDLSDDNATTGSLKKQPDQDGEVFSNLMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIRDNMMVLGITQRYKTKFVTTVYYS 273          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|635361163|emb|CCI49792.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 259.996 bits (663), Expect = 2.590e-82
Identity = 128/205 (62.44%), Postives = 158/205 (77.07%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFN----------EDSSTLDIARKE-------EELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
            E+DVVP VFRWEHGGR V I GTFNNW +Q+PMHRSGNDF+YI NL RGKHA+KF+VDDEWR APDQLTVAD++G +NN++DV+ F P +          EDS   +   ++       +E+YG   PD++EY+ KEPPPLPPHLRHIILNK P      +LP+PQHVA++HLYCTAIKDGMM+LG+TQR++ KFVTTVYYS+MP
Sbjct:  122 EEDVVPMVFRWEHGGRNVCITGTFNNWSKQMPMHRSGNDFVYITNLSRGKHAYKFVVDDEWRSAPDQLTVADLDGNVNNYVDVSDFIPLSDIEALEKAHGEDSDKEENCMEQDTRGIQCDEVYGRHIPDVDEYT-KEPPPLPPHLRHIILNKAPPTIDSRLLPIPQHVALNHLYCTAIKDGMMILGITQRYKQKFVTTVYYSLMP 325          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|676392395|ref|XP_009039475.1| (hypothetical protein AURANDRAFT_72117 [Aureococcus anophagefferens] >gi|323450051|gb|EGB05935.1| hypothetical protein AURANDRAFT_72117 [Aureococcus anophagefferens])

HSP 1 Score: 270.396 bits (690), Expect = 2.790e-82
Identity = 135/191 (70.68%), Postives = 154/191 (80.63%), Query Frame = 0
Query:  102 DREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEE---ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSM 289
            D +DD VPTVFRWEHGGR VY+ GTFNNW++QIPMHRSGNDF YIHNLK+GKHAFKF+VDDEWRFAPDQ TVAD+EGRINNFIDV+ F  +  D + L + R +    ELY    PD++EY+ K+PPPLPPHLRHIILNK P    P  LPVPQHVA++HLYCTAIKDGMMVLGVT R+R K  TTVYYS 
Sbjct:  494 DDDDDEVPTVFRWEHGGRVVYVTGTFNNWDKQIPMHRSGNDFTYIHNLKKGKHAFKFVVDDEWRFAPDQPTVADIEGRINNFIDVSDFDAYTGDENFL-LRRTKSVGGELYTREIPDLDEYT-KDPPPLPPHLRHIILNKAPPSNDPNALPVPQHVALNHLYCTAIKDGMMVLGVTLRYRQKACTTVYYSC 682          
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|219119527|ref|XP_002180522.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407995|gb|EEC47930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 259.61 bits (662), Expect = 6.486e-82
Identity = 133/224 (59.38%), Postives = 159/224 (70.98%), Query Frame = 0
Query:  104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-----------------------NEDSSTLDI----------------ARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288
            ++D VPTVFRWEHGGRQVYI GTFN W RQIPMHRSGNDF YIHNLKRGKHAFKFIVD+EWRFAPDQ TVAD+EGR+NNF+DVT FKP+                        +D   +++                A ++ E++  + PD+++Y+ KEPPPLPPHLRHIILNK P  +    LPVPQHVA++HLYCTAIKD MMVLG+TQR++ KFVTTVYYS
Sbjct:  111 DEDAVPTVFRWEHGGRQVYITGTFNGWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDNEWRFAPDQPTVADIEGRVNNFVDVTDFKPYTGDREFEREKAAAEYGAPLEAEDQQDEDNVNVVSTSIPNVDGQASGSKADQDGEVFSNTMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 333          
The following BLAST results are available for this feature:
BLAST of EWM28418.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110803|gb|EWM28418.1|0.000e+0100.005 ampactivated protein kinase subunit beta [Nannoc... [more]
gi|299470399|emb|CBN80160.1|5.731e-8656.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072231562|gb|OEU16294.1|2.127e-8462.95AMPKBI-domain-containing protein [Fragilariopsis c... [more]
gi|224000489|ref|XP_002289917.1|8.400e-8463.55predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|325193017|emb|CCA27392.1|1.505e-8363.115'AMPactivated protein kinase subunit beta putativ... [more]
gi|1210524839|dbj|GAX16348.1|1.685e-8362.275'-AMP-activated protein kinase, regulatory beta s... [more]
gi|1210512698|dbj|GAX28288.1|2.696e-8362.275'-AMP-activated protein kinase, regulatory beta s... [more]
gi|635361163|emb|CCI49792.1|2.590e-8262.44unnamed protein product [Albugo candida][more]
gi|676392395|ref|XP_009039475.1|2.790e-8270.68hypothetical protein AURANDRAFT_72117 [Aureococcus... [more]
gi|219119527|ref|XP_002180522.1|6.486e-8259.38predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2273rna2273Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications