EWM28418.1, cds2265 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|585110803|gb|EWM28418.1| (5 ampactivated protein kinase subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0 Query: 1 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP Sbjct: 1 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIGGAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|299470399|emb|CBN80160.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 267.7 bits (683), Expect = 5.731e-86 Identity = 157/279 (56.27%), Postives = 187/279 (67.03%), Query Frame = 0 Query: 33 TEFHHRREPGGRPGGRDGGYGGEE----GGSGIGGAHTPTSVGPGPPSSGALVLTG--------AERGAEGA-GDEMAI----DGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEEL---YGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291 ++F+ ++ G P GG+ + GG T P P G L G A GAEG GD M + D + E+++VPTVFRWEHGGRQVYI GTFNNWE+QIPMHRSGNDF YIH LK+GKHAFKFIVDDEWRFAPDQ TVAD+EGR+NNFIDV+ F + + + K+ E Y PD++EY+ KEPPPLPPHLRHIILNK P P LPVPQHVA++HLYCTAIKDGMMVLG+T+R++ KFVTTVYYS MP Sbjct: 4 SQFNSSKDGEGGPDREGGGFSDYQQTRTAAGAPGGFSDATFAPPVPMGDGRRHLYGGVASRDGTARPGAEGPPGDAMDVEAKADEGEEEEELVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRLKQLEANDKYSQCTPDLDEYT-KEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMP 281
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1072231562|gb|OEU16294.1| (AMPKBI-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 266.159 bits (679), Expect = 2.127e-84 Identity = 141/224 (62.95%), Postives = 158/224 (70.54%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNED--------------------------------------SSTLDIA-RKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288 +DD VPTVFRWEHGGRQVYI GTFN W RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FKP+ D SS L+ K+ E++ + PD++EY+ KEPPPLPPHLRHIILNK P + LPVPQHVA++HLYCTAIKD MMVLG+TQR++ KFVTTVYYS Sbjct: 122 DDDTVPTVFRWEHGGRQVYITGTFNGWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTDFKPYTGDREFEKEKAAADYGFISDDEEETTPATSGSDGKDSSGDGSSNLNAGPDKDGEVFSQTMPDMDEYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 344
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|224000489|ref|XP_002289917.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975125|gb|EED93454.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 263.848 bits (673), Expect = 8.400e-84 Identity = 136/214 (63.55%), Postives = 153/214 (71.50%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNED-----------------------------SSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288 E+D VPTVFRWEHGGR VYI GTFN W RQIPMHRSGNDF YIHNL+RGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK + D SS ++ E+YG + PD++EY+ KEPPPLPPHLRHIILNK P + LPVPQHVA++HLYCTAIKD MMVLG+TQR++ K TTVYYS Sbjct: 110 EEDTVPTVFRWEHGGRNVYITGTFNGWSRQIPMHRSGNDFTYIHNLRRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTDFKAYTGDREFEKERAAADYGSADSNDKPSAEGDETSSSGKKTGDRDGEVYGHAMPDLDEYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKSCTTVYYS 322
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|325193017|emb|CCA27392.1| (5'AMPactivated protein kinase subunit beta putative [Albugo laibachii Nc14]) HSP 1 Score: 263.077 bits (671), Expect = 1.505e-83 Identity = 130/206 (63.11%), Postives = 157/206 (76.21%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKE------------------EELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291 E+DVVP VFRWEHGGR V I GTFNNW +Q+PMHRSGNDF+YI NL RGKHA+KF+VDDEWR APDQLTVAD++G +NN++DV+ F P + D L+ A+ E EE YG PD++EY+ KEPPPLPPHLRHIILNK P +LP+PQHVA++HLYCTAIKDGMM+LG+TQR++ KFVTTVYYS+MP Sbjct: 121 EEDVVPMVFRWEHGGRNVCITGTFNNWSKQMPMHRSGNDFVYITNLSRGKHAYKFVVDDEWRSAPDQLTVADLDGNVNNYVDVSDFIPLS-DIEALEKAQGEDSDKDENCMEQDARGTHREEFYGRYIPDVDEYT-KEPPPLPPHLRHIILNKAPPTIDSRLLPIPQHVALNHLYCTAIKDGMMILGITQRYKQKFVTTVYYSLMP 324
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1210524839|dbj|GAX16348.1| (5'-AMP-activated protein kinase, regulatory beta subunit [Fistulifera solaris]) HSP 1 Score: 261.536 bits (667), Expect = 1.685e-83 Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-------------------------------NEDSSTLDIARKEE----ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288 +DD VPTVFRWEHGGRQVYI GTFNNW RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK + ++D++T +K+ E++ PD+++Y+ KEPPPLPPHLRHIILNK P + LPVPQHVA++HLYCTAI+D MMVLG+TQR++ KFVTTVYYS Sbjct: 61 DDDAVPTVFRWEHGGRQVYITGTFNNWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTGFKAYTGDKTFETERTAAMYGKTIVSVPSADSDGDLSDDNATTGSLKKQPDQDGEVFSNLMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIRDNMMVLGITQRYKTKFVTTVYYS 279
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|1210512698|dbj|GAX28288.1| (5'-AMP-activated protein kinase, regulatory beta subunit [Fistulifera solaris]) HSP 1 Score: 260.766 bits (665), Expect = 2.696e-83 Identity = 137/220 (62.27%), Postives = 159/220 (72.27%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-------------------------------NEDSSTLDIARKEE----ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288 +DD VPTVFRWEHGGRQVYI GTFNNW RQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQ TVAD+EGRINNFIDVT FK + ++D++T +K+ E++ PD+++Y+ KEPPPLPPHLRHIILNK P + LPVPQHVA++HLYCTAI+D MMVLG+TQR++ KFVTTVYYS Sbjct: 55 DDDAVPTVFRWEHGGRQVYITGTFNNWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVTGFKAYTGDKTFETERTAAMYGKTIVSVPSADSDGDLSDDNATTGSLKKQPDQDGEVFSNLMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIRDNMMVLGITQRYKTKFVTTVYYS 273
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|635361163|emb|CCI49792.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 259.996 bits (663), Expect = 2.590e-82 Identity = 128/205 (62.44%), Postives = 158/205 (77.07%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFN----------EDSSTLDIARKE-------EELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291 E+DVVP VFRWEHGGR V I GTFNNW +Q+PMHRSGNDF+YI NL RGKHA+KF+VDDEWR APDQLTVAD++G +NN++DV+ F P + EDS + ++ +E+YG PD++EY+ KEPPPLPPHLRHIILNK P +LP+PQHVA++HLYCTAIKDGMM+LG+TQR++ KFVTTVYYS+MP Sbjct: 122 EEDVVPMVFRWEHGGRNVCITGTFNNWSKQMPMHRSGNDFVYITNLSRGKHAYKFVVDDEWRSAPDQLTVADLDGNVNNYVDVSDFIPLSDIEALEKAHGEDSDKEENCMEQDTRGIQCDEVYGRHIPDVDEYT-KEPPPLPPHLRHIILNKAPPTIDSRLLPIPQHVALNHLYCTAIKDGMMILGITQRYKQKFVTTVYYSLMP 325
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|676392395|ref|XP_009039475.1| (hypothetical protein AURANDRAFT_72117 [Aureococcus anophagefferens] >gi|323450051|gb|EGB05935.1| hypothetical protein AURANDRAFT_72117 [Aureococcus anophagefferens]) HSP 1 Score: 270.396 bits (690), Expect = 2.790e-82 Identity = 135/191 (70.68%), Postives = 154/191 (80.63%), Query Frame = 0 Query: 102 DREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEE---ELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSM 289 D +DD VPTVFRWEHGGR VY+ GTFNNW++QIPMHRSGNDF YIHNLK+GKHAFKF+VDDEWRFAPDQ TVAD+EGRINNFIDV+ F + D + L + R + ELY PD++EY+ K+PPPLPPHLRHIILNK P P LPVPQHVA++HLYCTAIKDGMMVLGVT R+R K TTVYYS Sbjct: 494 DDDDDEVPTVFRWEHGGRVVYVTGTFNNWDKQIPMHRSGNDFTYIHNLKKGKHAFKFVVDDEWRFAPDQPTVADIEGRINNFIDVSDFDAYTGDENFL-LRRTKSVGGELYTREIPDLDEYT-KDPPPLPPHLRHIILNKAPPSNDPNALPVPQHVALNHLYCTAIKDGMMVLGVTLRYRQKACTTVYYSC 682
BLAST of EWM28418.1 vs. NCBI_GenBank
Match: gi|219119527|ref|XP_002180522.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407995|gb|EEC47930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 259.61 bits (662), Expect = 6.486e-82 Identity = 133/224 (59.38%), Postives = 159/224 (70.98%), Query Frame = 0 Query: 104 EDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPF-----------------------NEDSSTLDI----------------ARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYS 288 ++D VPTVFRWEHGGRQVYI GTFN W RQIPMHRSGNDF YIHNLKRGKHAFKFIVD+EWRFAPDQ TVAD+EGR+NNF+DVT FKP+ +D +++ A ++ E++ + PD+++Y+ KEPPPLPPHLRHIILNK P + LPVPQHVA++HLYCTAIKD MMVLG+TQR++ KFVTTVYYS Sbjct: 111 DEDAVPTVFRWEHGGRQVYITGTFNGWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDNEWRFAPDQPTVADIEGRVNNFVDVTDFKPYTGDREFEREKAAAEYGAPLEAEDQQDEDNVNVVSTSIPNVDGQASGSKADQDGEVFSNTMPDVDDYT-KEPPPLPPHLRHIILNKPPQLQDTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 333 The following BLAST results are available for this feature:
BLAST of EWM28418.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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