rna2272, rna2272 (mRNA) Nannochloropsis gaditana

Overview
Namerna2272
Unique Namerna2272
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1724
Alignment locationCM002458.1:1351316..1352491 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100088g7.1230.mrna
Orig protein idgnl|cribi|Naga_100088g7.1230
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1351316..1352491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100088g7gene2172Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2272rna2272-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28411.1cds2264Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2272 ID=rna2272|Name=rna2272|organism=Nannochloropsis gaditana|type=mRNA|length=1724bp
AAGGAAGCAGCAGGTCAGGGATGCACTTCTAATGCTCACCACAACATTGA
ATCATTTACTTTGAAACAAGATAATTTTTTTTAAAGGAGCTCTGAAACCC
TTGACTATTTAACGTAGTATATCGTTCTCATCTCTTGTGGAATGGAAGGA
ATTTTTCTGATAACAAAAAGTATCACAGCGACAGACACAACTTCTGGTCG
ATATCAAGTTTTCGCGAATATATGACGCACATAAATTTTCATGTCTCATA
TATTCTCATAACTTATCCATCCCTTGTCCTTGTCTGTGTCTCGCTGTTCG
GGAAATTACTCTCAGGCCTTTTTCTGCGGCGCCTTTTAGGAGGCACATCA
TGAACTTCCTCAGACCTTTAGCTTTGACTTTATTAATGGTCCCGAGTGCC
TTAGCAGCTCCTGCCACTCCCGCTGCCGCATCCTTGGAATCCCTTAAGAC
AGCGCATATAATTCCGGATGTAATCAGCAACTTCGACCCTACAGCTACGC
TGAGGGTGCAATACGGCAAGCAGGCCCCCTTGGAAATGGGGGAGCAGATC
CTTCCCTCCGAGGCCGCTGATCCTCCCTCGGTCACGTTCATGGGCACTAA
TCCTCAAAAGCTCTATACACTAGTCATGACGGATCCCGGTGTCCTTGACA
TCAAGACCTTACGAGGCCCCCAGCAAAGTGCATGGCAATGGCTCCACTGG
ATTGTCGTAAATGTGCCTGGCGAGAAGGCAGTCCCCGCCGCAGGTCAAGT
CCTTCAGCCGTACGGGCAACCCGCTCCTCCTGCTGGCAATCACCGTTACA
CCTTCATCCTCTTCGAGCAAAAGGCGGAGATCAACCCCGCGGTCCCCAAA
GGTCGTGACGCATTCGACACTCGAGCCTTTGCCATTGCAAATGGTCTCAC
TCCTATCGGCGGCTTCTATTTCCTGGCGGGGCCCGAAACAGCGCAGTAAA
CTGCCCGGATAAAGAGAGACCGAGGGGGACAAAGGGTCCGTAGTAATAAG
GAAATGGAGTGATATAGCTGTGAATTTGACTGAGAAAATGGAAAGCCGTA
CTTTTGGAAATTCATGCTTTGACACATATAGACACGCTCAAGCCATGAGA
ATACTCCATAATGCCCTATCACTTGTGTACTGTATATGATTTACGGCGTA
AGAGATCATGATATCGGTGGTCTTCAAAGTCAGATAAGCGATAGAAATAT
TGATTAGAAAACGATCACATTTTGAGATTACTCGTCGCTTGATTTTTACA
CTGCTTGAATTAAAAAATCTTAGTATGGTGGAAGGCGCGCATGCAACGAT
GCCCTCAACTACTAGCAGTCGGAGCGCGCGCTTTGCTATGGGAAGCTCGG
CGGCTCCAATGCATTTCTGCCTCATGTTGTTTGGCTGATGCGTACAATCT
CGATGACCTAGAATGTCGGAGAGAGACCCCGATAAAGAGTAAAGGCATGC
TGGGATAAAACGAGGAAATAAAATCGAGGAGAAAGACGGACGCAAGACAA
GCTTCTCGAGAGTCATTGGCGAGGGGACTGAATATGCCCTTCCTAGATTC
CGGATATGTGCATGTCCGCAGTCTGCGTGGTCTCTTCTTGCGCGTTGCAA
GTTGGGAGGTAGTTTCTCCCTCTTTCGTGTCTGGGGTTTCCTTTGTGTCG
TCAACTGCCAGCAACACAGAGCGTCGCGGACGTGTGGTGATGATGGATAA
CTCGTTCCAAAGGAGTGCACGTCG
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protein sequence of rna2272

>rna2272-protein ID=rna2272-protein|Name=rna2272|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MVGRQALPWECGHRLCPRGGGEGAAEATGSQEARADESIITHDILINGDK
TRKDGSSTGSCGSIGAVTQGNGGKGKRARTLSKAKRKRKEPGANKGIVLR
VLLDPHLSLLPAGAVPFLSHLQIRGSQHTRDASELPQVVSSPPSRSTEMD
YATNRVLDIHGFSIPEHTHTVEASLEQEQRQCTRRKLTNEDGDKKVLSMS
FQTDPNQDKRIDVVSAQNDRALNKTVNIIFAV
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mRNA from alignment at CM002458.1:1351316..1352491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2272 ID=rna2272|Name=rna2272|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002458.1:1351316..1352491+ (Nannochloropsis gaditana)
ATGGTCGGCAGGCAAGGTCGGGGGAGAAGCGGGAAGCTGGAGGCATGGAG
CCGCAGCCGCTAATCGGGTCCTGGACCCAGAGAAGACCGTGTCACAGCGC
AATAGAGACAGGCCAAAGGcagggggccagggggaggcgagggagggggc
ggcgagcgtggaggacggcatgAGGTTCCTGCCCGTCGCTgtggcgcggg
agggaggcgagtcGCGCCAACCAAGGCACAAGGGGACCCTGAGAGGGAAG
ACTGAGCCGATCATCGTGGATGGAAGCTGCTCTGGCtcttctgcctccct
gcccaagCCCTCCCATGGGAGTGCGGGCATCGCCTGTGCccccgaggggg
gggcgagggcgcaGCTGAGGCGACCGGCAGCCAGGAGGCCCGGGCAGACG
AATCAATCATCACACATGACATCCTAATTAATGGAGACAAGACTAGGAAA
GATGGTAGCAGCACAGGTAGCTGCGGCAGTATCGGGGCAGTGACGCAAGG
CAATGGCGGCAAGGGCAAGCGTGCAAGGACATTGTCCAAGGccaagagaa
aaagaaaggagccTGGAGCAAACAAGGGAATTGTATTGCGTGTGCTGCTT
GATCCACATCTGTCGCTACTGCCCGCCGGCgccgtccctttcctctcgcA
CCTTCAAATTCGCGGCTCCCAGCATACCCGGGATGCCAGTGAGCTCCCTC
AAGTCGTCAGCAGCCCTCCCTCAAGAAGTACTGAAATGGACTATGCCACA
AACAGAGTCCTCGATATTCATGGATTTTCAATACCAGAGCATACGCATAC
TGTGGAGGCCTCCCTGGAACAGGAGCAGCGTCAGTGTACAAGGAGAAAAT
TGACGAATGAAGATGGGGACAAGAAGGTGCTGAGCATGAGCTTTCAAACC
GATCCGAATCAGGACAAACGCATCGATGTGGTCAGCGCTCAAAACGACAG
AGCTCTGAATAAGACTGTTAACATCATATTTGCTGTATAAAGGTAGAGCT
TTAGCCTGCACTGCCAGAGTGGAGATGAAGTCGTAATTTTAGACTTGACG
GCAATAATGGACCCGCACACTGGCTGCAGTGCAGCCTGCAGAAGATGTAT
ATTTGTGCACAGGTAGTGCACACGCCTGCATTTTTTAATCAATAAGCAAC
CATGCCGAAAATCAATCTATGAAACA
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Coding sequence (CDS) from alignment at CM002458.1:1351316..1352491+

>rna2272 ID=rna2272|Name=rna2272|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002458.1:1351316..1352491+ (Nannochloropsis gaditana)
ATGGTCGGCAGGCAAGCCCTCCCATGGGAGTGCGGGCATCGCCTGTGCcc
ccgaggggggggcgagggcgcaGCTGAGGCGACCGGCAGCCAGGAGGCCC
GGGCAGACGAATCAATCATCACACATGACATCCTAATTAATGGAGACAAG
ACTAGGAAAGATGGTAGCAGCACAGGTAGCTGCGGCAGTATCGGGGCAGT
GACGCAAGGCAATGGCGGCAAGGGCAAGCGTGCAAGGACATTGTCCAAGG
ccaagagaaaaagaaaggagccTGGAGCAAACAAGGGAATTGTATTGCGT
GTGCTGCTTGATCCACATCTGTCGCTACTGCCCGCCGGCgccgtcccttt
cctctcgcACCTTCAAATTCGCGGCTCCCAGCATACCCGGGATGCCAGTG
AGCTCCCTCAAGTCGTCAGCAGCCCTCCCTCAAGAAGTACTGAAATGGAC
TATGCCACAAACAGAGTCCTCGATATTCATGGATTTTCAATACCAGAGCA
TACGCATACTGTGGAGGCCTCCCTGGAACAGGAGCAGCGTCAGTGTACAA
GGAGAAAATTGACGAATGAAGATGGGGACAAGAAGGTGCTGAGCATGAGC
TTTCAAACCGATCCGAATCAGGACAAACGCATCGATGTGGTCAGCGCTCA
AAACGACAGAGCTCTGAATAAGACTGTTAACATCATATTTGCTGTATAAA
TGGTCGGCAGGCAAGCCCTCCCATGGGAGTGCGGGCATCGCCTGTGCccc
cgaggggggggcgagggcgcaGCTGAGGCGACCGGCAGCCAGGAGGCCCG
GGCAGACGAATCAATCATCACACATGACATCCTAATTAATGGAGACAAGA
CTAGGAAAGATGGTAGCAGCACAGGTAGCTGCGGCAGTATCGGGGCAGTG
ACGCAAGGCAATGGCGGCAAGGGCAAGCGTGCAAGGACATTGTCCAAGGc
caagagaaaaagaaaggagccTGGAGCAAACAAGGGAATTGTATTGCGTG
TGCTGCTTGATCCACATCTGTCGCTACTGCCCGCCGGCgccgtccctttc
ctctcgcACCTTCAAATTCGCGGCTCCCAGCATACCCGGGATGCCAGTGA
GCTCCCTCAAGTCGTCAGCAGCCCTCCCTCAAGAAGTACTGAAATGGACT
ATGCCACAAACAGAGTCCTCGATATTCATGGATTTTCAATACCAGAGCAT
ACGCATACTGTGGAGGCCTCCCTGGAACAGGAGCAGCGTCAGTGTACAAG
GAGAAAATTGACGAATGAAGATGGGGACAAGAAGGTGCTGAGCATGAGCT
TTCAAACCGATCCGAATCAGGACAAACGCATCGATGTGGTCAGCGCTCAA
AACGACAGAGCTCTGAATAAGACTGTTAACATCATATTTGCTGTATAA
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Synonyms
Publications