rna2271, rna2271 (mRNA) Nannochloropsis gaditana

Overview
Namerna2271
Unique Namerna2271
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2452
Alignment locationCM002458.1:1345750..1347729 +

Link to JBrowse

Properties
Property NameValue
Productcen
Orig transcript idgnl|cribi|Naga_100088g8.1224.mrna
Orig protein idgnl|cribi|Naga_100088g8.1224
GeneCEN
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1345750..1347729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CENgene2171Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2271rna2271-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28405.1cds2263Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2271 ID=rna2271|Name=rna2271|organism=Nannochloropsis gaditana|type=mRNA|length=2452bp
ATCACGTCTCAATTTCTAAATACAATTTGTTTACTTGGTAAGCTTGACAT
GCGTTATCAAATCACGAAGGCGCAGGCACATGCCGACATGTTTTATGCGT
CCTAGGACCCGGTTCCCACTGAAAACATTTTCTTGCCCAGTTTTATTTCC
CTACTCAATACACGGAAAGCCGAAGTAGCTTTTTGGGACAGCATACCAGT
TTGAAACAAATGGGCAAGAATATATTTCATGCGATGTTTCCCTTGTTGAC
ACCCACACGTTCCCTATTAAGCAGTTGGGCACTGTCGCTGATCCCAAATA
ATGCGTTCCCTATATAAATTTGTCACTAACGATCTCTTGATACATTTCAC
TCAGACAAATTCGAGACATTCGTCGGACTGTAAAGTTTTCTACGGGGTTG
CCTTCTTCCTGTCGTCCTTTCCAAAATCTTACCTTGGTCAGTGTTTTTTG
TGGACACGTCGCGTCGGCGTAATAGCTCTTCGTAAGTACTATCTAAATTA
GACGTGCGTGACGACTTTTAGATATCTCTATATGGCATGTACTGCTGTCT
GTCCAATGTAATACGTAAAAAAGTGCGTTTACTATAGTTTTTAAATATTA
TACGAAGTCTTCCTAGAGCAATTAAAAACATCTTTTTGGTGAATCATAAG
GAATATAAGCGATACTAGCTCCACTACTTTTAAGAATATCTCTTTATTCA
ATCATCACACAGACTGATTAACCAAAAGGCGACAAGATACCGTTCCGATG
GACAGCTCAAAAACTTCTGATACTCCTTCCTTTCTATTTTCCTTCCTGCT
GAGTGCAGAAAACGCCTCTAAAGCTTTTTTGCTGTGGTGTTCCTTAGAGG
TCCTGTTTTATTTCGTCATAAACCGTCTAATATATCCACGCATAAAGCAG
CTGCGGGCCGCTCCTTCTCATCCCCCGGAAAAATCTCCTCTCGAATGTCT
TGCTCGATTGACAGACGCGCTACACCGCTTACGAGGAGTCTATAGCCCTG
AATCATTCTGGTCAGGATGGTTCAAGGGAGCGATGCATGAGAATATCCGG
CGAAATAATGTAAAAGAGTTTCTGTGCTGGGCGATTTGGCACGTGAAGTC
CTCCGAGGAGTTGGCGAAATCGGATGTGCTAGCTTTGGAAAAGACAGTTG
TACTAATGGAGCGACTACAAGGAAAATCTTTCCCGGCTGGCCATAATCCA
GAGGTTGAACATGTTGCCTTTACCCGTGAGCCTCTCTACTTTGCCCATCG
CTTGCTCATTTTCTACGTGGTCGTCAAATGTGCTCAGCTCATGGGGCACG
GCTTTCTGCTCTTGACGGGGCATCGGCGGTATGTAACACCTACTCACAAC
CTAACTTACTGGCATCGGCCTTGCCAGCAAGAGGAGGGGTCAATTAAGCA
ACCGCCCCTTCTCTTCTTTCACGGTATCAGCCCAGGCATATGGTTCTACA
TTCCCTTTCTCACGCGGTTGGGTAGAGGCCGGGAAATCATCTTGCTGGAA
GTCCCCCACATAGTCACGCAGCTGTCGTTTGAAGCCCCTGACCGGATTGA
AACCGTGCAGTCCCTTGCAGAGGTCCTTGCTCTGCATTCCATCTCGAAAT
GCGCCGTCGCCGGCCATTCTTTCGGCTCCATCATCGCTGGATGGGCCGCC
ACCGCCTTTCCCCAACACGTCAAGCAGTTGGTACTCATCGACCCAGTCTG
TCTCCTCCTCTGCCTTCCTGACGTGGCAGTCAATTTTCTGTATCGGTCCC
CCCCCACGAATCTCTTTCACCGGACACTGAAAGACTTTATTGATCCTTCC
AGCGAGATCACGGTCTCCCATGCCTTGAGGCGGCATTTCTGGTGGTATCA
GAATATATGCTGGCTGCAGGATGTGTCATGTCCCCTAGTCGTGGCTCTTT
CATCCGAGGATGACATTGTTCCTTCCACTGCCATCCACTATTATGTGCAG
CGGCATTACAGAATGCAAGAAGCGGTCAAACATGAAAAGGAGGACGATGC
TGGTGAGATGACGGACCAGAGTAACGCAAGCGGGAGTGGACGCCTGATAT
ATTGGAGGGGCATTGGGCATGGACAAATGCTGGTGTCATTAAAAGCGCAG
GACAGATTAATCGCAGCCATTTGTAAGCAGGCTATGGAGTCGGGGTTGGC
GACAAGAGCCGAAGACATCAAGAATAGCGGACAAAAGAGTGTGAGGAGGA
GAAGGGTGACCGCAGCGTAGTTTCTCTTAGCTGGATGTGCATGTCCAATT
TGTATAAAAAAGAGCCTTGCAAGGAAGGAGAAATAAACCCCAAAAGATGC
TCTCGCTATTCTGGTAGTTGGGCCTTTGGTGAAGAAAGGTTGTTCCACCA
ACTTGACTCTCGATGAAATGAAAGCCTATGCATGTTAATAATGAAAAATT
GGAGCAAATTCATGTCTACGACCACGAAAAAGTAAATAACCTTAAGATGC
AC
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protein sequence of rna2271

>rna2271-protein ID=rna2271-protein|Name=rna2271|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MNFLRPLALTLLMVPSALAAPATPAAASLESLKTAHIIPDVISNFDPTAT
LRVQYGKQAPLEMGEQILPSEAADPPSVTFMGTNPQKLYTLVMTDPGVLD
IKTLRGPQQSAWQWLHWIVVNVPGEKAVPAAGQVLQPYGQPAPPAGNHRY
TFILFEQKAEINPAVPKGRDAFDTRAFAIANGLTPIGGFYFLAGPETAQ
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mRNA from alignment at CM002458.1:1345750..1347729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2271 ID=rna2271|Name=rna2271|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp|location=Sequence derived from alignment at CM002458.1:1345750..1347729+ (Nannochloropsis gaditana)
aaggaagcagcaGGTCAGGGATGCACTTCTAATGCTCACCACAACATTGA
ATCATTTACTTTGAAACAAGAtaattttttttaaaggaGCTCTGAAACCC
TTGACTATTTAACGTAGTATATCGTTCTCATCTCTTGTGGAATGGAAGGA
ATTTTTCTGATAACAAAAAGTATCACAGCGACAGACACAACTTCTGGTCG
ATATCAAGTTTTCGCGAATATATGACGCACATAAATTTTCATGTCTCATA
TATTCTCATAACTTATCCatcccttgtccttgtctGTGTCTCGCTGTTCG
GGAAATTACTCTCAGGCCTTTTTCTGCGGCGCCTTTTAGGAGGCACATCA
TGAACTTCCTCAGACCTTTAGCTTTGACTTTATTAATGGGTAAGATTCAC
CAGGCCAATTTATATGGACAATATTGATTTGTAAAGAATCATAAACTCTG
TATGCTCTCACCCTAGTCTCACATTATTGTATTGtcattccttcctcacg
TCTGTACAGTCCCGAGTGCCTTAGCAGCTCCTGCCACTCCCGCTGCCGCA
TCCTTGGAATCCCTTAAGACAGCGCATATAATTCCGGATGTAATCAGCAA
CTTCGACCCTACAGCTACGCTGAGGGTGCAATACGGCAAGCAGGCCCCCT
TGGAAATGGGGGAGCagatccttccctccgagGCCGCTGATCCTCCCTCG
GTCACGTTCATGGGCACTAATCCTCAAAAGGTAAGACCGAGGAACCTGAG
TCATGACGCAAAGAGTCTCACATGGCAAGCAGCCGCTCAAAGGGAGTTTT
TGTGATGACAGATGAACAGGTGTACTCTCCTTAAAAATTGCTTCTTCTCA
TATTCCTTTACAACAGCTCTATACACTAGTCATGACGGATCCCGGTGTCC
TTGACATCAAGACCTTACGAGGCCCCCAGCAAAGTGCATGGCAATGGCTC
CACTGGATTGTCGTAAATGTGCCTGGCGAGAAGGCAGTCCCCGCCGCAGG
TCAAGTCCTTCAGCCGTACGGGCAacccgctcctcctgctggCAATCACC
GTTAcaccttcatcctcttcgagcAAAAGGCGGAGATCAACCCCGCGGTC
CCCAAAGGTCGTGACGCATTCGACACTCGAGCCTTTGCCATTGCAAATGG
TCTCACTCCTATCGGCGGCTTCTATTTCCTGGCGGGGCCCGAAACAGCGC
AGTAAACTGCCCGGATAAAGAGAGACCGAGGGGGACAAAGGGTCCGTAGT
AATAAGGAAATGGAGTGATATAGCTGTGAATTTGACTGAGAAAATGGAAA
GCCGTACTTTTGGAAATTCATGCTTTGACACATATAGACACGCTCAAGCC
ATGAGAATACTCCATAATGCCCTATCACTTGTGTACTGTATATGATTTAC
GGCGTAAGAGATCATGATATCGGTGGTCTTCAAAGTCAGATAAGCGATAG
AAATATTGATTAGAAAACGATCACATTTTGAGATTACTCGTCGCTTGATT
TTTACACTGCTTGAATTAAAAAATCTTAGTATGGTGGAAGGCGCGCATGC
AACGATGCCCTCAACTACTAGCAGTCGGAGCGCGCGCTTTGCTATGGGAA
GCTCGGCGGCTCCAATGCATTTCTGCCTCATGTTGTTTGGCTGATGCGTA
CAATCTCGATGACCTAGAATGTCGGAGAGAGACCCCGATAAAGAGTAAAG
GCATGCTGGGATAAAACGAGGAAATAAAatcgaggagaaagacggaCGCA
AGACAAGCTTCTCGAGAGTCATTGGCGAGGGGACTGAATATGCCCTTCCT
AGATTCCGGATATGTGCATGTCCGCAGTCTGCGTGGTCTCTTCTTGCGCG
TTGCAAGTTGGGAGGTagtttctccctctttcgtgTCTGGGGTTTCCTTT
GTGTCGTCAACTGCCAGCAACACAGAGCGTCGCGGACGTGTGGTGATGAT
GGATAACTCGTTCCAAAGGAGTGCACGTCG
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Coding sequence (CDS) from alignment at CM002458.1:1345750..1347729+

>rna2271 ID=rna2271|Name=rna2271|organism=Nannochloropsis gaditana|type=CDS|length=1800bp|location=Sequence derived from alignment at CM002458.1:1345750..1347729+ (Nannochloropsis gaditana)
ATGAACTTCCTCAGACCTTTAGCTTTGACTTTATTAATGGTCCCGAGTGC
CTTAGCAGCTCCTGCCACTCCCGCTGCCGCATCCTTGGAATCCCTTAAGA
CAGCGCATATAATTCCGGATGTAATCAGCAACTTCGACCCTACAGCTACG
CTGAGGGTGCAATACGGCAAGCAGGCCCCCTTGGAAATGGGGGAGCagat
ccttccctccgagGCCGCTGATCCTCCCTCGGTCACGTTCATGGGCACTA
ATCCTCAAAAGCTCTATACACTAGTCATGACGGATCCCGGTGTCCTTGAC
ATCAAGACCTTACGAGGCCCCCAGCAAAGTGCATGGCAATGGCTCCACTG
GATTGTCGTAAATGTGCCTGGCGAGAAGGCAGTCCCCGCCGCAGGTCAAG
TCCTTCAGCCGTACGGGCAacccgctcctcctgctggCAATCACCGTTAc
accttcatcctcttcgagcAAAAGGCGGAGATCAACCCCGCGGTCCCCAA
AGGTCGTGACGCATTCGACACTCGAGCCTTTGCCATTGCAAATGGTCTCA
CTCCTATCGGCGGCTTCTATTTCCTGGCGGGGCCCGAAACAGCGCAGTAA
ATGAACTTCCTCAGACCTTTAGCTTTGACTTTATTAATGGTCCCGAGTGC
CTTAGCAGCTCCTGCCACTCCCGCTGCCGCATCCTTGGAATCCCTTAAGA
CAGCGCATATAATTCCGGATGTAATCAGCAACTTCGACCCTACAGCTACG
CTGAGGGTGCAATACGGCAAGCAGGCCCCCTTGGAAATGGGGGAGCagat
ccttccctccgagGCCGCTGATCCTCCCTCGGTCACGTTCATGGGCACTA
ATCCTCAAAAGCTCTATACACTAGTCATGACGGATCCCGGTGTCCTTGAC
ATCAAGACCTTACGAGGCCCCCAGCAAAGTGCATGGCAATGGCTCCACTG
GATTGTCGTAAATGTGCCTGGCGAGAAGGCAGTCCCCGCCGCAGGTCAAG
TCCTTCAGCCGTACGGGCAacccgctcctcctgctggCAATCACCGTTAc
accttcatcctcttcgagcAAAAGGCGGAGATCAACCCCGCGGTCCCCAA
AGGTCGTGACGCATTCGACACTCGAGCCTTTGCCATTGCAAATGGTCTCA
CTCCTATCGGCGGCTTCTATTTCCTGGCGGGGCCCGAAACAGCGCAGTAA
ATGAACTTCCTCAGACCTTTAGCTTTGACTTTATTAATGGTCCCGAGTGC
CTTAGCAGCTCCTGCCACTCCCGCTGCCGCATCCTTGGAATCCCTTAAGA
CAGCGCATATAATTCCGGATGTAATCAGCAACTTCGACCCTACAGCTACG
CTGAGGGTGCAATACGGCAAGCAGGCCCCCTTGGAAATGGGGGAGCagat
ccttccctccgagGCCGCTGATCCTCCCTCGGTCACGTTCATGGGCACTA
ATCCTCAAAAGCTCTATACACTAGTCATGACGGATCCCGGTGTCCTTGAC
ATCAAGACCTTACGAGGCCCCCAGCAAAGTGCATGGCAATGGCTCCACTG
GATTGTCGTAAATGTGCCTGGCGAGAAGGCAGTCCCCGCCGCAGGTCAAG
TCCTTCAGCCGTACGGGCAacccgctcctcctgctggCAATCACCGTTAc
accttcatcctcttcgagcAAAAGGCGGAGATCAACCCCGCGGTCCCCAA
AGGTCGTGACGCATTCGACACTCGAGCCTTTGCCATTGCAAATGGTCTCA
CTCCTATCGGCGGCTTCTATTTCCTGGCGGGGCCCGAAACAGCGCAGTAA
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Synonyms
Publications