rna2265, rna2265 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2265
Unique Name	rna2265
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1446
Alignment location	CM002458.1:1319762..1321410 +

Link to JBrowse

Properties


Property Name	Value
Product	translation initiation factor if-3
Orig transcript id	gnl\|cribi\|Naga_100088g13.1226.mrna
Orig protein id	gnl\|cribi\|Naga_100088g13.1226
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1319762..1321410 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100088g13	gene2166	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2265	rna2265-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28407.1	cds2257	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1319762..1321410+
coding sequence from alignment at CM002458.1:1319762..1321410+

mRNA sequence

>rna2265 ID=rna2265|Name=rna2265|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp
ATGGATTTTTCGACGGCATCAGCCCCTTCTTTGTATTCCTCTACGCACCA
ATATTATCCTTCGCCTCGTCAAATGAAGCCTGCATTCGACTACCTACCAC
ATTCCCCCCCCGTACCTGCGGCCTCATTGATGCCATTTCCGTACACACGT
CACCTCGATGGTTTCCTCCAACATAAGGACTGGGCGAATGTGCAGGACAC
AGTGAAAGACGCGCTTTTTTTTTGCGCCCGTGCTTTGCAAGAGCAGCATG
ACGAGATAATTGCTCTTCAGAGGCAGCTAATAGATATTCAGAGAAAGGAA
GTATCGAATATTGTGCCGGAATTAGAGAGGAAGGTGGCCGCAATGACGCA
GGCGGTGCAAGAGGCTCAAAACCAGAATGGCGACGCACTCGTGGGTATGG
CGGCCCTGCGTACCCGGATGAAAGAGAATGAGACGGCTGCGGAGAGGGGA
CTTCGGGAGCTTCGAAGGCAAGTGGGCGAGGAGGCGGGCGTATGGCACGC
TGTACATGTCAAGGCCTCCCCAAACGAAGGCGGGACTGCCCCGATGACGC
GTGTTGAGGGGGCAGGACACATGACTCCACCCGCTTCACAGGAGGCTCAC
AGGCGAATGGACAGGGAGGCCCAGCTATTGGATGCCCTGTCTCACAAGGC
AGGAAGAGAAGAAGTGGACGAGCTGCGAAGGCGGCTGGAAGAAGTTGCCT
TCGCTCGGGATCTAGCCTCGGCCTCTGCTGTGGCATCCATCAAGCATGCT
CGGGACATGGAAAGGGGAAAAGAACGAGAGGAACTTCTCCTTTTGAAGAG
AGAAGTCGCACGGCTGACGCATGACCTTCATACACTGACCGTGGAAAAAA
TGGAGGGAAGAAAGATGAATACGGAGATGGCGGCGGATAAGAGGAGTTCT
CAGAACGACGAAGAGTACGTAAAGCTTCCGTTGGATGCCCCGTCACGATT
GGCGGGACGCTGGCTTTGGAAAAGCGGGGCACGGAGGATGGTGACGCGAC
GTGGAGGCTGGGTCCTGTGGGAGAAGCAAGCCACGAATCCTAGCTTCCCT
CTCTCCCTGAAGGCGAAAGTGGGCTCCTTCGAGGCGCAGCCCTTCCTGTG
GAAGCCAAGAGAGAGCGGGGTGGGTGTGCCACTGGGCGGGCTCTACCATC
TGGTCGTCGGCCTCTTCACATCGCGAACGGTACCCCTCTTACAGGTCTAC
TTGAATGAAAGTCTCCTCTTCACGATAAGCGCCCCACGTCGTCCCATCCC
TATCGCTGTGTCAATATGTGTCTTTACCCCCTGGGGGGGTGCTGAGCGTC
AAGGTGGATGTGGAAGAGGAAGAGTTTTGCGAGGAAGCAGGGCGGGAGGT
GGCTTGGGACAGGCCTATGCAGGGCTTCTTGCAATTAGTCAAGTTGTGAA
AGAAGACTTCCAGCGCACGGAAGGAAAGAGATTGACTATAAAATGA

protein sequence of rna2265

>rna2265-protein ID=rna2265-protein|Name=rna2265|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPS
LPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVV
NKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASD
PWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRR
VMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVE
IKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEIN
KESRRENENGAKD

mRNA from alignment at CM002458.1:1319762..1321410+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2265 ID=rna2265|Name=rna2265|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at CM002458.1:1319762..1321410+ (Nannochloropsis gaditana)
ATGCTACCTCTTATACAGCGGATGgggcccttccttcccacaaTTACCAA
GGACATGTGTAAGGTCTCACTGAGAAGCACGAGGGAGATCCATGCCATCG
CTATTACCGGGGCTATGGTCACccggagaaggacaagacCACAACCTTCG
CTACCTCCTCTACCCTTTGCAGTGAGTGGGGCTAGCTGCAGAGGTGCTAT
GGCGACATTACCCGCAGGGCGGGCTGCTTCCACGAACGCCAGCGGCAGTG
GTGACAACATTTCGACTATAATTCCGCCCAAGAAGGGGTAAGAACGTTgt
agggggaaaaaaagggcgGCAGTAAGACTCATCTGTATCAGGCAGACAGT
GTGGTCCCTTCCCCTATTCAGCAACTCCATTTCACCTTTTCAACGACTAT
TCAGAGACCTAGTTGTTAATAAAGCCATTCAAGCGGGTACCGTACGTTTG
GTTGTAAAGAATGATGCGGGCGgacccgcctcctcgagcatCCTCTCACG
TGACGAGGCGTTGGCCAAGGCTCAGGCGGCGGGCTTGGACTTGGTGTTGG
GTAAGGGGCGAAGAGGGTtggaaaagagaaaaatCGCCCACATATCAAAT
CATGGGTGGAGAATAGTGCAGACGTCATGTGGAAAGCACGCTGAGGATct
gtcttttcttccctctttccctttcttctttcaaTCGTCTAGTAACAGCC
GCCTCCGACCCCTGGGTGTGCAAACTTGCCGACGCAAAGCGAGAAAAGTA
TCAACGagtgaaaaaagagaagaaaacgAAAAACGTTGGCAGCGTCCTGA
AGGAAATCAGCATTCGGGTAAAACGAGATAAAttggagggaaatggaaga
ggggggggaagtaattaagaggaagggagggagctgaAGCAGGGACACGG
cgcagagaagaaagaggtggcAAATAACAAGAGTCCACATtggcccccct
cttctttatTTCGTTCACAGGGCAATATATCCGACCACGACCTTTTGATC
AAGCTGCGTCGGGTGATGGGATTCTTCGAGCACGGCTACTCTGTCCGCAT
CATAATCGTACCAACAGGCCACCAGGTACCTATCTCTCTTGTCCTTCATC
CATGTACCTTTAGGGTATTTATATCTGCAAGAGGGTTTGCGTCCTCATTT
GATGTGCGATGCAGAGTCATCTCCACGTGTGGCATGCCCTGCACTTGACA
GTTGTCTCTCCGTCCGGGCCGGCTACAAGAGATTTACGATTTCATCCTGA
AAGACTACTTAGTGGATAAGTATAAGGTAAGTAATTGAGTCAGTAGGCAT
GTAAGGGTAAGGGGATCCAAGTGTTGTGTGAGGAAGAAAGACTGGAAAGC
AGGACTTCAAAACCGGAAATGTTTCTGTCTTCACAGATATCGAGGTGCAT
ATTGCGCTCTCATCATGTTGCCTCACACATGCTTCCTTCATGCAGAGCTT
CGTGGAGATTAAGCCTTCTCCTGGGTCGctaaggagggagatgattGTCC
ACCCGAAGCGTAATGCcagcggaggaggcggagggggtggaggtgcgAGC
AAAGGGGCACAAAATAGGACGGGAAATCAAAAAAGAGTTCGCAAAGTTGA
AATAAACAAGGAAAGTAGGCGTGAAAAtgaaaatggcgcgaaagatTAA

Coding sequence (CDS) from alignment at CM002458.1:1319762..1321410+

>rna2265 ID=rna2265|Name=rna2265|organism=Nannochloropsis gaditana|type=CDS|length=5652bp|location=Sequence derived from alignment at CM002458.1:1319762..1321410+ (Nannochloropsis gaditana)
ATGCTACCTCTTATACAGCGGATGgggcccttccttcccacaaTTACCAA
GGACATGTGTAAGGTCTCACTGAGAAGCACGAGGGAGATCCATGCCATCG
CTATTACCGGGGCTATGGTCACccggagaaggacaagacCACAACCTTCG
CTACCTCCTCTACCCTTTGCAGTGAGTGGGGCTAGCTGCAGAGGTGCTAT
GGCGACATTACCCGCAGGGCGGGCTGCTTCCACGAACGCCAGCGGCAGTG
GTGACAACATTTCGACTATAATTCCGCCCAAGAAGGGAGACCTAGTTGTT
AATAAAGCCATTCAAGCGGGTACCGTACGTTTGGTTGTAAAGAATGATGC
GGGCGgacccgcctcctcgagcatCCTCTCACGTGACGAGGCGTTGGCCA
AGGCTCAGGCGGCGGGCTTGGACTTGGTGTTGGTAACAGCCGCCTCCGAC
CCCTGGGTGTGCAAACTTGCCGACGCAAAGCGAGAAAAGTATCAACGagt
gaaaaaagagaagaaaacgAAAAACGTTGGCAGCGTCCTGAAGGAAATCA
GCATTCGGGGCAATATATCCGACCACGACCTTTTGATCAAGCTGCGTCGG
GTGATGGGATTCTTCGAGCACGGCTACTCTGTCCGCATCATAATCGTACC
AACAGGCCACCAGTTGTCTCTCCGTCCGGGCCGGCTACAAGAGATTTACG
ATTTCATCCTGAAAGACTACTTAGTGGATAAGTATAAGAGCTTCGTGGAG
ATTAAGCCTTCTCCTGGGTCGctaaggagggagatgattGTCCACCCGAA
GCGTAATGCcagcggaggaggcggagggggtggaggtgcgAGCAAAGGGG
CACAAAATAGGACGGGAAATCAAAAAAGAGTTCGCAAAGTTGAAATAAAC
AAGGAAAGTAGGCGTGAAAAtgaaaatggcgcgaaagatTAAATGCTACC
TCTTATACAGCGGATGgggcccttccttcccacaaTTACCAAGGACATGT
GTAAGGTCTCACTGAGAAGCACGAGGGAGATCCATGCCATCGCTATTACC
GGGGCTATGGTCACccggagaaggacaagacCACAACCTTCGCTACCTCC
TCTACCCTTTGCAGTGAGTGGGGCTAGCTGCAGAGGTGCTATGGCGACAT
TACCCGCAGGGCGGGCTGCTTCCACGAACGCCAGCGGCAGTGGTGACAAC
ATTTCGACTATAATTCCGCCCAAGAAGGGAGACCTAGTTGTTAATAAAGC
CATTCAAGCGGGTACCGTACGTTTGGTTGTAAAGAATGATGCGGGCGgac
ccgcctcctcgagcatCCTCTCACGTGACGAGGCGTTGGCCAAGGCTCAG
GCGGCGGGCTTGGACTTGGTGTTGGTAACAGCCGCCTCCGACCCCTGGGT
GTGCAAACTTGCCGACGCAAAGCGAGAAAAGTATCAACGagtgaaaaaag
agaagaaaacgAAAAACGTTGGCAGCGTCCTGAAGGAAATCAGCATTCGG
GGCAATATATCCGACCACGACCTTTTGATCAAGCTGCGTCGGGTGATGGG
ATTCTTCGAGCACGGCTACTCTGTCCGCATCATAATCGTACCAACAGGCC
ACCAGTTGTCTCTCCGTCCGGGCCGGCTACAAGAGATTTACGATTTCATC
CTGAAAGACTACTTAGTGGATAAGTATAAGAGCTTCGTGGAGATTAAGCC
TTCTCCTGGGTCGctaaggagggagatgattGTCCACCCGAAGCGTAATG
CcagcggaggaggcggagggggtggaggtgcgAGCAAAGGGGCACAAAAT
AGGACGGGAAATCAAAAAAGAGTTCGCAAAGTTGAAATAAACAAGGAAAG
TAGGCGTGAAAAtgaaaatggcgcgaaagatTAAATGCTACCTCTTATAC
AGCGGATGgggcccttccttcccacaaTTACCAAGGACATGTGTAAGGTC
TCACTGAGAAGCACGAGGGAGATCCATGCCATCGCTATTACCGGGGCTAT
GGTCACccggagaaggacaagacCACAACCTTCGCTACCTCCTCTACCCT
TTGCAGTGAGTGGGGCTAGCTGCAGAGGTGCTATGGCGACATTACCCGCA
GGGCGGGCTGCTTCCACGAACGCCAGCGGCAGTGGTGACAACATTTCGAC
TATAATTCCGCCCAAGAAGGGAGACCTAGTTGTTAATAAAGCCATTCAAG
CGGGTACCGTACGTTTGGTTGTAAAGAATGATGCGGGCGgacccgcctcc
tcgagcatCCTCTCACGTGACGAGGCGTTGGCCAAGGCTCAGGCGGCGGG
CTTGGACTTGGTGTTGGTAACAGCCGCCTCCGACCCCTGGGTGTGCAAAC
TTGCCGACGCAAAGCGAGAAAAGTATCAACGagtgaaaaaagagaagaaa
acgAAAAACGTTGGCAGCGTCCTGAAGGAAATCAGCATTCGGGGCAATAT
ATCCGACCACGACCTTTTGATCAAGCTGCGTCGGGTGATGGGATTCTTCG
AGCACGGCTACTCTGTCCGCATCATAATCGTACCAACAGGCCACCAGTTG
TCTCTCCGTCCGGGCCGGCTACAAGAGATTTACGATTTCATCCTGAAAGA
CTACTTAGTGGATAAGTATAAGAGCTTCGTGGAGATTAAGCCTTCTCCTG
GGTCGctaaggagggagatgattGTCCACCCGAAGCGTAATGCcagcgga
ggaggcggagggggtggaggtgcgAGCAAAGGGGCACAAAATAGGACGGG
AAATCAAAAAAGAGTTCGCAAAGTTGAAATAAACAAGGAAAGTAGGCGTG
AAAAtgaaaatggcgcgaaagatTAAATGCTACCTCTTATACAGCGGATG
gggcccttccttcccacaaTTACCAAGGACATGTGTAAGGTCTCACTGAG
AAGCACGAGGGAGATCCATGCCATCGCTATTACCGGGGCTATGGTCACcc
ggagaaggacaagacCACAACCTTCGCTACCTCCTCTACCCTTTGCAGTG
AGTGGGGCTAGCTGCAGAGGTGCTATGGCGACATTACCCGCAGGGCGGGC
TGCTTCCACGAACGCCAGCGGCAGTGGTGACAACATTTCGACTATAATTC
CGCCCAAGAAGGGAGACCTAGTTGTTAATAAAGCCATTCAAGCGGGTACC
GTACGTTTGGTTGTAAAGAATGATGCGGGCGgacccgcctcctcgagcat
CCTCTCACGTGACGAGGCGTTGGCCAAGGCTCAGGCGGCGGGCTTGGACT
TGGTGTTGGTAACAGCCGCCTCCGACCCCTGGGTGTGCAAACTTGCCGAC
GCAAAGCGAGAAAAGTATCAACGagtgaaaaaagagaagaaaacgAAAAA
CGTTGGCAGCGTCCTGAAGGAAATCAGCATTCGGGGCAATATATCCGACC
ACGACCTTTTGATCAAGCTGCGTCGGGTGATGGGATTCTTCGAGCACGGC
TACTCTGTCCGCATCATAATCGTACCAACAGGCCACCAGTTGTCTCTCCG
TCCGGGCCGGCTACAAGAGATTTACGATTTCATCCTGAAAGACTACTTAG
TGGATAAGTATAAGAGCTTCGTGGAGATTAAGCCTTCTCCTGGGTCGcta
aggagggagatgattGTCCACCCGAAGCGTAATGCcagcggaggaggcgg
agggggtggaggtgcgAGCAAAGGGGCACAAAATAGGACGGGAAATCAAA
AAAGAGTTCGCAAAGTTGAAATAAACAAGGAAAGTAGGCGTGAAAAtgaa
aatggcgcgaaagatTAAATGCTACCTCTTATACAGCGGATGgggccctt
ccttcccacaaTTACCAAGGACATGTGTAAGGTCTCACTGAGAAGCACGA
GGGAGATCCATGCCATCGCTATTACCGGGGCTATGGTCACccggagaagg
acaagacCACAACCTTCGCTACCTCCTCTACCCTTTGCAGTGAGTGGGGC
TAGCTGCAGAGGTGCTATGGCGACATTACCCGCAGGGCGGGCTGCTTCCA
CGAACGCCAGCGGCAGTGGTGACAACATTTCGACTATAATTCCGCCCAAG
AAGGGAGACCTAGTTGTTAATAAAGCCATTCAAGCGGGTACCGTACGTTT
GGTTGTAAAGAATGATGCGGGCGgacccgcctcctcgagcatCCTCTCAC
GTGACGAGGCGTTGGCCAAGGCTCAGGCGGCGGGCTTGGACTTGGTGTTG
GTAACAGCCGCCTCCGACCCCTGGGTGTGCAAACTTGCCGACGCAAAGCG
AGAAAAGTATCAACGagtgaaaaaagagaagaaaacgAAAAACGTTGGCA
GCGTCCTGAAGGAAATCAGCATTCGGGGCAATATATCCGACCACGACCTT
TTGATCAAGCTGCGTCGGGTGATGGGATTCTTCGAGCACGGCTACTCTGT
CCGCATCATAATCGTACCAACAGGCCACCAGTTGTCTCTCCGTCCGGGCC
GGCTACAAGAGATTTACGATTTCATCCTGAAAGACTACTTAGTGGATAAG
TATAAGAGCTTCGTGGAGATTAAGCCTTCTCCTGGGTCGctaaggaggga
gatgattGTCCACCCGAAGCGTAATGCcagcggaggaggcggagggggtg
gaggtgcgAGCAAAGGGGCACAAAATAGGACGGGAAATCAAAAAAGAGTT
CGCAAAGTTGAAATAAACAAGGAAAGTAGGCGTGAAAAtgaaaatggcgc
gaaagatTAAATGCTACCTCTTATACAGCGGATGgggcccttccttccca
caaTTACCAAGGACATGTGTAAGGTCTCACTGAGAAGCACGAGGGAGATC
CATGCCATCGCTATTACCGGGGCTATGGTCACccggagaaggacaagacC
ACAACCTTCGCTACCTCCTCTACCCTTTGCAGTGAGTGGGGCTAGCTGCA
GAGGTGCTATGGCGACATTACCCGCAGGGCGGGCTGCTTCCACGAACGCC
AGCGGCAGTGGTGACAACATTTCGACTATAATTCCGCCCAAGAAGGGAGA
CCTAGTTGTTAATAAAGCCATTCAAGCGGGTACCGTACGTTTGGTTGTAA
AGAATGATGCGGGCGgacccgcctcctcgagcatCCTCTCACGTGACGAG
GCGTTGGCCAAGGCTCAGGCGGCGGGCTTGGACTTGGTGTTGGTAACAGC
CGCCTCCGACCCCTGGGTGTGCAAACTTGCCGACGCAAAGCGAGAAAAGT
ATCAACGagtgaaaaaagagaagaaaacgAAAAACGTTGGCAGCGTCCTG
AAGGAAATCAGCATTCGGGGCAATATATCCGACCACGACCTTTTGATCAA
GCTGCGTCGGGTGATGGGATTCTTCGAGCACGGCTACTCTGTCCGCATCA
TAATCGTACCAACAGGCCACCAGTTGTCTCTCCGTCCGGGCCGGCTACAA
GAGATTTACGATTTCATCCTGAAAGACTACTTAGTGGATAAGTATAAGAG
CTTCGTGGAGATTAAGCCTTCTCCTGGGTCGctaaggagggagatgattG
TCCACCCGAAGCGTAATGCcagcggaggaggcggagggggtggaggtgcg
AGCAAAGGGGCACAAAATAGGACGGGAAATCAAAAAAGAGTTCGCAAAGT
TGAAATAAACAAGGAAAGTAGGCGTGAAAAtgaaaatggcgcgaaagatT
AA

Synonyms

Publications