EWM28407.1, cds2257 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|585110792|gb|EWM28407.1| (translation initiation factor if-3 [Nannochloropsis gaditana]) HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0 Query: 1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD 313 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD Sbjct: 1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD 313
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|553185116|ref|XP_005854203.1| (translation initiation factor if-3 [Nannochloropsis gaditana CCMP526] >gi|422294857|gb|EKU22157.1| translation initiation factor if-3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 480.33 bits (1235), Expect = 5.836e-170 Identity = 238/246 (96.75%), Postives = 238/246 (96.75%), Query Frame = 0 Query: 1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK 246 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGS DN STIIPPKKGDLVVNKAIQAGT NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK Sbjct: 1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSEDNTSTIIPPKKGDLVVNKAIQAGT------NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK 240
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1175347331|ref|WP_081895123.1| (translation initiation factor IF-3 [Mesoaciditoga lauensis]) HSP 1 Score: 98.9821 bits (245), Expect = 2.388e-21 Identity = 64/152 (42.11%), Postives = 89/152 (58.55%), Query Frame = 0 Query: 90 IIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSS--ILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKD 239 +I KK + N+ I++ TVRL+ GP S I+S++EAL KA+ GLDLVLV+ S P VCK+ D R Y++ KK+KK K GSVLK++ R I +HD KL V F + G VRI I+ G +++ + +EI D I KD Sbjct: 10 VINIKKTGPLKNEEIRSSTVRLI------GPEGSQFGIVSKEEALRKAKEYGLDLVLVSPNSRPPVCKIMDFGRYMYEQSKKQKKNKVSGSVLKQMKFRPKIDEHDYQTKLSHVKRFLQSGNKVRITIMFRGREMAF-TDKGKEILDRIAKD 154
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1174085213|ref|WP_081428032.1| (translation initiation factor IF-3 [Dictyoglomus thermophilum]) HSP 1 Score: 90.1225 bits (222), Expect = 4.605e-18 Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 0 Query: 97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222 D VN+ I+A VR+V D G I+S EAL A+ LDLV V ++P VC++ D + KY+ +KEK K + + S +KEI IR NI +HD +KLR++ F E GY VR+II+ G QL Sbjct: 4 DYRVNEKIRAKEVRVV---DEDGK-QLGIMSVSEALKIAREKNLDLVEVAPNANPPVCRIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 128
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|501579340|ref|WP_012583670.1| (translation initiation factor IF-3 [Dictyoglomus turgidum] >gi|217967696|ref|YP_002353202.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724] >gi|217336795|gb|ACK42588.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724]) HSP 1 Score: 87.8113 bits (216), Expect = 3.373e-17 Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 0 Query: 97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222 D VN+ I+A +R+V D G I+ EAL A+ LDLV V ++P VCK+ D + KY+ +KEK K + + S +KEI IR NI +HD +KLR++ F E GY VR+II+ G QL Sbjct: 4 DYRVNEKIRAREIRVV---DEDG-KQLGIMPVSEALKLARERNLDLVEVAPNANPPVCKIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 128
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1175396340|ref|WP_081944128.1| (translation initiation factor IF-3 [Tissierellia bacterium S5-A11]) HSP 1 Score: 85.5001 bits (210), Expect = 1.649e-16 Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSV--LKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223 +L +N+ I+A VRLV +++ ++S+ EALA A+ GLDLV V P VC+L + + +Y++ K+EK+ + V LKE+ +R NI DHD +K++ + F E G V++ I+ G +LS Sbjct: 4 ELRINEQIRAREVRLVSEDNE----QLGVMSQREALAMAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDGSKVKVTIMFRGRELS 128
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|206739373|gb|ACI18431.1| (translation initiation factor IF-3 [Dictyoglomus thermophilum H-6-12]) HSP 1 Score: 83.5741 bits (205), Expect = 8.423e-16 Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 0 Query: 125 ILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222 I+S EAL A+ LDLV V ++P VC++ D + KY+ +KEK K + + S +KEI IR NI +HD +KLR++ F E GY VR+II+ G QL Sbjct: 11 IMSVSEALKIAREKNLDLVEVAPNANPPVCRIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 111
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|760152862|ref|WP_043833969.1| (translation initiation factor IF-3 [Roseomonas aerilata]) HSP 1 Score: 82.8037 bits (203), Expect = 1.841e-15 Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0 Query: 100 VNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSV--LKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223 VN+ I+A VRL+ D G + +R EALA+A G+DL+ ++ +DP VCK+ D + KY++ KK + + V +KEI +R NI DHD +K+R++ GF E G V++ + G +++ Sbjct: 13 VNEEIRAPQVRLI---DQDGEMQGVMTAR-EALARAYDVGMDLLEISPNADPPVCKITDFGKFKYEQQKKANEARKRQKVVEIKEIKVRPNIDDHDYEVKMRQMKGFIEEGDKVKVTLRFRGREMA 134
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|499663748|ref|WP_011344482.1| (translation initiation factor IF-3 [Carboxydothermus hydrogenoformans] >gi|77994948|gb|ABB13847.1| translation initiation factor IF-3 [Carboxydothermus hydrogenoformans Z-2901]) HSP 1 Score: 82.4185 bits (202), Expect = 2.344e-15 Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0 Query: 97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVL--KEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223 DL +N+ I+A VR VVK D I+ EAL A+ LDLV + + P VCK+ D + +YQ+ KKEK+ + ++ KEI IR I +HD +KLR V+ F E G V++ ++ G +LS Sbjct: 4 DLRINEEIRAKEVR-VVKEDG---TQLGIMPLKEALKIAEEMELDLVEIAPTAKPPVCKIMDYGKYRYQQSKKEKEARKKQKIINVKEIKIRPTIEEHDFQVKLRNVLRFLEDGDKVKVTVMFRGRELS 128
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1160021601|gb|OPL18283.1| (translation initiation factor IF-3 [Candidatus Aegiribacteria bacterium MLS_C]) HSP 1 Score: 82.4185 bits (202), Expect = 2.375e-15 Identity = 62/172 (36.05%), Postives = 87/172 (50.58%), Query Frame = 0 Query: 100 VNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKE---KKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSF--VEIKPSPGSLRREMIVHP 266 VN IQ+ VRL+ +N ILS EAL A AGLDLV ++ +DP V + D + +Y++ +KE +K++NVG LKEI R N +HD K++ M F E Y V+ +V G QL+ + Q L D L D F +E KP + MI+ P Sbjct: 9 VNGEIQSPRVRLLDENGE----HVGILSIQEALDMAAKAGLDLVEISPGADPPVVSIVDYGKFRYRQKRKERKARKSQNVGG-LKEIKFRPNTEEHDYSFKMKHAMEFLESRYKVKATVVFRGRQLAYKEQGYQ------LLDKLADDLSEFGQIERKPVMEGRQMTMIIAP 169 The following BLAST results are available for this feature:
BLAST of EWM28407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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