EWM28407.1, cds2257 (CDS) Nannochloropsis gaditana

Overview
NameEWM28407.1
Unique Namecds2257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1319762..1320048 +
Alignment locationCM002458.1:1320166..1320311 +
Alignment locationCM002458.1:1320454..1320578 +
Alignment locationCM002458.1:1320732..1320836 +
Alignment locationCM002458.1:1320963..1321037 +
Alignment locationCM002458.1:1321207..1321410 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28407.1
Producttranslation initiation factor if-3
Orig transcript idgnl|cribi|Naga_100088g13.1226.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1319762..1320048 +
CM002458.1supercontigCM002458.1:1320166..1320311 +
CM002458.1supercontigCM002458.1:1320454..1320578 +
CM002458.1supercontigCM002458.1:1320732..1320836 +
CM002458.1supercontigCM002458.1:1320963..1321037 +
CM002458.1supercontigCM002458.1:1321207..1321410 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR019814Translation_initiation_fac_3_N
IPR001288Translation_initiation_fac_3
IPR019815Translation_initiation_fac_3_C
Homology
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|585110792|gb|EWM28407.1| (translation initiation factor if-3 [Nannochloropsis gaditana])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD 313
            MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD
Sbjct:    1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRVRKVEINKESRRENENGAKD 313          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|553185116|ref|XP_005854203.1| (translation initiation factor if-3 [Nannochloropsis gaditana CCMP526] >gi|422294857|gb|EKU22157.1| translation initiation factor if-3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 480.33 bits (1235), Expect = 5.836e-170
Identity = 238/246 (96.75%), Postives = 238/246 (96.75%), Query Frame = 0
Query:    1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSGDNISTIIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK 246
            MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGS DN STIIPPKKGDLVVNKAIQAGT      NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK
Sbjct:    1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPLPFAVSGASCRGAMATLPAGRAASTNASGSEDNTSTIIPPKKGDLVVNKAIQAGT------NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYK 240          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1175347331|ref|WP_081895123.1| (translation initiation factor IF-3 [Mesoaciditoga lauensis])

HSP 1 Score: 98.9821 bits (245), Expect = 2.388e-21
Identity = 64/152 (42.11%), Postives = 89/152 (58.55%), Query Frame = 0
Query:   90 IIPPKKGDLVVNKAIQAGTVRLVVKNDAGGPASSS--ILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKD 239
            +I  KK   + N+ I++ TVRL+      GP  S   I+S++EAL KA+  GLDLVLV+  S P VCK+ D  R  Y++ KK+KK K  GSVLK++  R  I +HD   KL  V  F + G  VRI I+  G +++    + +EI D I KD
Sbjct:   10 VINIKKTGPLKNEEIRSSTVRLI------GPEGSQFGIVSKEEALRKAKEYGLDLVLVSPNSRPPVCKIMDFGRYMYEQSKKQKKNKVSGSVLKQMKFRPKIDEHDYQTKLSHVKRFLQSGNKVRITIMFRGREMAF-TDKGKEILDRIAKD 154          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1174085213|ref|WP_081428032.1| (translation initiation factor IF-3 [Dictyoglomus thermophilum])

HSP 1 Score: 90.1225 bits (222), Expect = 4.605e-18
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 0
Query:   97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222
            D  VN+ I+A  VR+V   D  G     I+S  EAL  A+   LDLV V   ++P VC++ D  + KY+  +KEK   K + + S +KEI IR NI +HD  +KLR++  F E GY VR+II+  G QL
Sbjct:    4 DYRVNEKIRAKEVRVV---DEDGK-QLGIMSVSEALKIAREKNLDLVEVAPNANPPVCRIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 128          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|501579340|ref|WP_012583670.1| (translation initiation factor IF-3 [Dictyoglomus turgidum] >gi|217967696|ref|YP_002353202.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724] >gi|217336795|gb|ACK42588.1| translation initiation factor IF-3 [Dictyoglomus turgidum DSM 6724])

HSP 1 Score: 87.8113 bits (216), Expect = 3.373e-17
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222
            D  VN+ I+A  +R+V   D  G     I+   EAL  A+   LDLV V   ++P VCK+ D  + KY+  +KEK   K + + S +KEI IR NI +HD  +KLR++  F E GY VR+II+  G QL
Sbjct:    4 DYRVNEKIRAREIRVV---DEDG-KQLGIMPVSEALKLARERNLDLVEVAPNANPPVCKIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 128          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1175396340|ref|WP_081944128.1| (translation initiation factor IF-3 [Tissierellia bacterium S5-A11])

HSP 1 Score: 85.5001 bits (210), Expect = 1.649e-16
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSV--LKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223
            +L +N+ I+A  VRLV +++        ++S+ EALA A+  GLDLV V     P VC+L +  + +Y++ K+EK+ +    V  LKE+ +R NI DHD  +K++  + F E G  V++ I+  G +LS
Sbjct:    4 ELRINEQIRAREVRLVSEDNE----QLGVMSQREALAMAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDGSKVKVTIMFRGRELS 128          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|206739373|gb|ACI18431.1| (translation initiation factor IF-3 [Dictyoglomus thermophilum H-6-12])

HSP 1 Score: 83.5741 bits (205), Expect = 8.423e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 0
Query:  125 ILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEK---KTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQL 222
            I+S  EAL  A+   LDLV V   ++P VC++ D  + KY+  +KEK   K + + S +KEI IR NI +HD  +KLR++  F E GY VR+II+  G QL
Sbjct:   11 IMSVSEALKIAREKNLDLVEVAPNANPPVCRIMDFGKFKYELARKEKEAKKNQKIASEVKEIKIRPNIEEHDYQVKLRKIREFLEKGYKVRLIILFKGRQL 111          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|760152862|ref|WP_043833969.1| (translation initiation factor IF-3 [Roseomonas aerilata])

HSP 1 Score: 82.8037 bits (203), Expect = 1.841e-15
Identity = 46/126 (36.51%), Postives = 75/126 (59.52%), Query Frame = 0
Query:  100 VNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSV--LKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223
            VN+ I+A  VRL+   D  G     + +R EALA+A   G+DL+ ++  +DP VCK+ D  + KY++ KK  + +    V  +KEI +R NI DHD  +K+R++ GF E G  V++ +   G +++
Sbjct:   13 VNEEIRAPQVRLI---DQDGEMQGVMTAR-EALARAYDVGMDLLEISPNADPPVCKITDFGKFKYEQQKKANEARKRQKVVEIKEIKVRPNIDDHDYEVKMRQMKGFIEEGDKVKVTLRFRGREMA 134          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|499663748|ref|WP_011344482.1| (translation initiation factor IF-3 [Carboxydothermus hydrogenoformans] >gi|77994948|gb|ABB13847.1| translation initiation factor IF-3 [Carboxydothermus hydrogenoformans Z-2901])

HSP 1 Score: 82.4185 bits (202), Expect = 2.344e-15
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0
Query:   97 DLVVNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVL--KEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLS 223
            DL +N+ I+A  VR VVK D        I+   EAL  A+   LDLV +   + P VCK+ D  + +YQ+ KKEK+ +    ++  KEI IR  I +HD  +KLR V+ F E G  V++ ++  G +LS
Sbjct:    4 DLRINEEIRAKEVR-VVKEDG---TQLGIMPLKEALKIAEEMELDLVEIAPTAKPPVCKIMDYGKYRYQQSKKEKEARKKQKIINVKEIKIRPTIEEHDFQVKLRNVLRFLEDGDKVKVTVMFRGRELS 128          
BLAST of EWM28407.1 vs. NCBI_GenBank
Match: gi|1160021601|gb|OPL18283.1| (translation initiation factor IF-3 [Candidatus Aegiribacteria bacterium MLS_C])

HSP 1 Score: 82.4185 bits (202), Expect = 2.375e-15
Identity = 62/172 (36.05%), Postives = 87/172 (50.58%), Query Frame = 0
Query:  100 VNKAIQAGTVRLVVKNDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKE---KKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSF--VEIKPSPGSLRREMIVHP 266
            VN  IQ+  VRL+ +N         ILS  EAL  A  AGLDLV ++  +DP V  + D  + +Y++ +KE   +K++NVG  LKEI  R N  +HD   K++  M F E  Y V+  +V  G QL+ +    Q      L D L D    F  +E KP     +  MI+ P
Sbjct:    9 VNGEIQSPRVRLLDENGE----HVGILSIQEALDMAAKAGLDLVEISPGADPPVVSIVDYGKFRYRQKRKERKARKSQNVGG-LKEIKFRPNTEEHDYSFKMKHAMEFLESRYKVKATVVFRGRQLAYKEQGYQ------LLDKLADDLSEFGQIERKPVMEGRQMTMIIAP 169          
The following BLAST results are available for this feature:
BLAST of EWM28407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110792|gb|EWM28407.1|0.000e+0100.00translation initiation factor if-3 [Nannochloropsi... [more]
gi|553185116|ref|XP_005854203.1|5.836e-17096.75translation initiation factor if-3 [Nannochloropsi... [more]
gi|1175347331|ref|WP_081895123.1|2.388e-2142.11translation initiation factor IF-3 [Mesoaciditoga ... [more]
gi|1174085213|ref|WP_081428032.1|4.605e-1842.64translation initiation factor IF-3 [Dictyoglomus t... [more]
gi|501579340|ref|WP_012583670.1|3.373e-1741.86translation initiation factor IF-3 [Dictyoglomus t... [more]
gi|1175396340|ref|WP_081944128.1|1.649e-1636.43translation initiation factor IF-3 [Tissierellia b... [more]
gi|206739373|gb|ACI18431.1|8.423e-1644.55translation initiation factor IF-3 [Dictyoglomus t... [more]
gi|760152862|ref|WP_043833969.1|1.841e-1536.51translation initiation factor IF-3 [Roseomonas aer... [more]
gi|499663748|ref|WP_011344482.1|2.344e-1538.76translation initiation factor IF-3 [Carboxydotherm... [more]
gi|1160021601|gb|OPL18283.1|2.375e-1536.05translation initiation factor IF-3 [Candidatus Aeg... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2265rna2265Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications