rna2263, rna2263 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2263
Unique Name	rna2263
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2034
Alignment location	CM002458.1:1314310..1316459 +

Link to JBrowse

Properties


Property Name	Value
Product	COP9 signalosome, subunit CSN8
Orig transcript id	gnl\|cribi\|Naga_100088g15.1231.mrna
Orig protein id	gnl\|cribi\|Naga_100088g15.1231
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1314310..1316459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100088g15	gene2164	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2263	rna2263-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28412.1	cds2255	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1314310..1316459+
coding sequence from alignment at CM002458.1:1314310..1316459+

mRNA sequence

>rna2263 ID=rna2263|Name=rna2263|organism=Nannochloropsis gaditana|type=mRNA|length=2034bp
CTTAAAAAATAGGTCATTTTTCGAATGAACAACGCGCACCCACACTCGCA
TTACAAGCAGGGATACATTGGATCGCCTTCATCCTTGTCATATAAAAATA
GAAGCAGAATGATTTCTTCCATTACATGGGTGCCTCGGGGCGCCGCGAAC
CCCAATCCCCCTCGTTTCCAAGCGTGCAAAGAAGAAGTCGAGGCCCTACT
TCGTGAGCATGGAGGTGGTAATAACGAGCTCGAAAGACAAGATTTCGAAG
AGGAGGATGAAGAAGAAGGGCAAAATGGCGAGTTGGACCGGCATGGTTTG
CCTGTTGAGCTTCATATGGACGATTACGATGACGAGGATGAAGCCGCGGG
AGGGGCGCAGAAGGCCGCTTTCATCCACGCAGACGCCAGTGAGGAGGAAG
AAGGCGTTGAGAATGGGGAGGATGAGGAGGATGAGGATGAGGAGGAAGTG
GGTATAATGGAGGAGGAAGAGGAGGAGGAGGGAGAGGAGGAAGACGAAGG
GGAGGAAGGGGAGGAAGTAGAGGAAGAGGAAGAGGAAAGTGGAAGAGGAA
AGGAGGATCAGCAGAGAAATGAGCTCGCAGGAGCCTTGCCAGCAAGTGCG
TTTCTGCGAGGTATGGATGATAATGACGAGGAAGACGACGACAGCGAGGA
CATGGAGGACCACATGATTAAGTCGACAGACGCGGTCGTTCTGGTGGCGA
ATACCGAGGACGAGGAGCACTCGGCCCTGGAGGTCCATGTCTATGAGGAG
GACACGGGCTCGCTCTACATCCACCACGATATCTCCCTCCCCGCCTTCCC
CCTCTGTGTAGCCTGGGGCCACTGCCCGCCCGTGCCGGGACGGGAGAGCG
AGCGCGGCTCCTTTGCGGCCGTGGGGACGTTCAAACCGGGGATTGAGATA
TGGGACGTGGACATCATTGATCCGCTTGAGCCAGTCCGCATACTGGGCGG
TGAAAAGGCGCTGCAGGGCACCGCCTCTTCGTGGAGCAAAGCCGGCAAGA
AGGGCGGGAAGAAAAAGAAGAAACGGCGCCAAAATGAAGACGAACTCGTG
GAGGGCAGTCATGAGGGCCCTGTCATGACGCTCGCTTGGAACCAATTCCA
CAGACAGGTCCTGGCCTCCGGCTCGGCCGACAGCACTATTAAGCTCTGGG
ACGTGACGACGGGCGAGTGCTCCGCCACGCTCGCGCACCACACCGACAAG
GTTTCCTCTCTGAGCTGGCACCCTGTGGAAGGCACTGTCCTCGCATCCGC
CGGCTTTGATCGGGGCATATACGTCCTGGACGCGCGGGGCGGGAGCGCGA
GCAGCCACGTTCAAATGCAGGGGGCGGGAGGGAAGGTAGGGAACGAGGGC
GGAGGAGGCTTCCCCCAAATAAACATGCCTCCAGGCATATTCCTCGATTC
CAAGTCTCATTCCTCCTCTCCTGGGCTGCAGGCTGACCCCGAGTGCGTGG
GCTGGTGTCCTCATGCTCCCTCCACCCTCCTGTGTACCACCGAAGACGGC
AGCCTGGTCGCCTGGGACGTCAGGGCTCCCTCGGGCCCCCTGTGGAAAGC
CAAGGTGCACACGAAGACTTGCTCCTCCTTCTCTTTCTCCGCCCTCGCCC
CGGGCCTGATGGCCACGTGCGGCATGGACAAGACGGTCAAGCTCTGGGAT
TATTCGGGCGATCCCGGCGTCCCCCCGCGACAGCTGGGAGAGAAAGCGAT
GTCCGTCGGAAAACTCTTCTCCATCTCCTTCTATCCCAGCTCGCCCTTCC
TGTTGGCCACGGGGGGAGACAAGGGGCTGCTGGCTTTGTGGAATCTGCAC
GAATGCGAGGGCGTGATGCGACGTTTCGGGGAAGGAGGAGGGAAAGGCGA
GAAGGAGGGTATGCAGGCGGCGAGCATGATGGAGGGGATGAGCCTGGAGG
GGACTGGGGACGGAGAGAAGGAGAGGGGGGAGCAGAAGGACAAAAAGAAG
GACAAGGGCGGTAAGGGGAAAGCACCGAGTGGAAAAGCAAGATCACAGAC
AGGAACGAGTGGAAAAGGAAGCCGAAAGAAGTAG

protein sequence of rna2263

>rna2263-protein ID=rna2263-protein|Name=rna2263|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVAND
VEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKD
VSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGA
SRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR

mRNA from alignment at CM002458.1:1314310..1316459+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2263 ID=rna2263|Name=rna2263|organism=Nannochloropsis gaditana|type=mRNA|length=2150bp|location=Sequence derived from alignment at CM002458.1:1314310..1316459+ (Nannochloropsis gaditana)
GGTTTTCAAAAGATGATGGGCCGGCTACGTCGTGCATAATAATGACTGTG
TTTTCCGCGATATCTCTGAAGGAGCTTCGGCTGCATGTTCCTGCCAGCAA
CAGAAACGGCGCCAGGAGCGTTGTGCAAACGATAAAATTTCTATTCGCTC
ATTCTTATGCCTCTCTAAACATAGTGACGCAAGCACCTGCATTACATCTG
CTATGCAATCCGACCCACAGCAAATTCAGGGTACGCCTTCGTTGGCTGCC
TCTACAGCagtgcctcccccctcgctgcaACCCCTTACGCAACAAATGCG
AAACTACCTTGCTCAGCAAGACTACATAAATGCCCTTCGCGTCGCAAATG
ACGTTGAAATATTGCTTCTGGTAaaagaatgaggaaggaaaagctACACC
AATCGAACGACACTCAACCCTGATTTCGCTTGTAGACTCAGCTGACTTTG
CccggccaccaccttcacaTCTCACAGACAAACAAACTATGCCCTGGTGA
CGGAAATCCTCAACTCCTGCTTGCTGTTCAGCTGCTTTTACACCTTATCC
TGGACGATCTGTACGTtattttcctctttgtctCCACCTCGAGCCCATCC
CTAAAGCCacagctctccctccttcctcctcccactgctTCTTAGGGCCA
ACGCCCGGCTTTTATGGCGGCGCATCCCCAACGAGCTGAAGGACGTGTCA
ATCCTTGAGGGGAGACAACTGTCAAAGGCGTGGGACGTGGGAAAGTCGTT
GTGGGCGCGGTAAGCGACACCGGGCCTGAGAGTGACAGGCAGACATCGAA
GTTTCCGTAGACACGTTACGACGCCTAGCTGGAACCTTATCGCCACGCAT
CTCACATTTCCATTTCCTTGTTCTCCAGAGAGATCCCTGCTGCTCATGTC
GCCATACGGGACGTACGATGGACGCCGGAGCTCGTGCCTTTGGTGGATGC
GTTACGTGGTGCGTCGAGAGGAATGCTGCcttcgagggcgggggggacga
TCCTGATGACCATGAGAATGATGGGTGATAACGGCGACGTTAACGATGaa
attgagggagggaggaaatacGGAAGGACGGTGGGAAAGAGCGTTTGGGC
TGAGTCCCAAAGATGAGCTTGTTGACAACGGTGGACGGAATGGCGGGACT
TTCGACACGATACTGGCATGGTAGCCTTCCTGTGGACCGTCGCATCTCAT
TATCACTTTTTACTGCTACTTATCCCTTCCGGgctgccttcttcccttgc
tgTGCGGGTTCCCCGATTCTTTTTCCGGCAGAGCGCATCCTTCGGGACGA
GTTTGCCCTCTTGAGTCGTGCTTTTCGACGCTTGAGGATCTCGTCCATGG
CAAAGAAGCTGGGCGTGACTGAATCGGAAGCTGTCGCAGGTAACCTTCCC
CCACACTACCCTTTTCTCGTTTCCTTTCTTGTTTGGCACACTAGACCTAT
CATCAAACCcgcgctcccttcccttcccgtgacctctctcccttcctcgt
atCCTTTGCGTCAAGCGGCGAGGCAGGCAGGatggaaagtggaggagggc
aagggggaagtGGAACCCTCACCTTCGCTACCCTCGTCAGGCGAATCCAT
CGGtaaagacaggaaggggcTCCCTtttcttgggggggggatggcccTGC
TTAGAGAGGATAACGATGCCCGTTATGTCATTTTCAGGAAGCCTTATCTC
ACGTTTCCTCCCATTATCTCACTTTTTCTTACTCCCCACAGGTTTGCCCG
AGCTGGAGCAACTTACGAAGTATATCTCTTTCTTAGAGGCAGAGAGTGTC
ACCTCCTCTGTGGCCTGAGGGTAGGATTAGAGGCATGAGAAGAGGGGACc
agagaggggcggaggcagggcatGCAAATGTacaaaaaaaaagggaaaga
aacgcTTCTGACCCAGACAGGCGCTCTAGCTACATCCTCAATCGTTACTC
TTGATTCTCATTTTATAGTCaatctctttccttccgtgCGCTGGAAGTCT
TCTTTCACAACTTGACTAATTGCAAGAAGCCCTGCATAGGCCTGTCCCaa
gccacctcccgccctgcttcctcgcaaaactcttcctcttccacatCCAC
CTTGACGCTCAGCACCCCCCCAGGGGGTAAAGACACATATTGACACAGCG

Coding sequence (CDS) from alignment at CM002458.1:1314310..1316459+

>rna2263 ID=rna2263|Name=rna2263|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002458.1:1314310..1316459+ (Nannochloropsis gaditana)
ATGCAATCCGACCCACAGCAAATTCAGGGTACGCCTTCGTTGGCTGCCTC
TACAGCagtgcctcccccctcgctgcaACCCCTTACGCAACAAATGCGAA
ACTACCTTGCTCAGCAAGACTACATAAATGCCCTTCGCGTCGCAAATGAC
GTTGAAATATTGCTTCTGACAAACAAACTATGCCCTGGTGACGGAAATCC
TCAACTCCTGCTTGCTGTTCAGCTGCTTTTACACCTTATCCTGGACGATC
TGGCCAACGCCCGGCTTTTATGGCGGCGCATCCCCAACGAGCTGAAGGAC
GTGTCAATCCTTGAGGGGAGACAACTGTCAAAGGCGTGGGACGTGGGAAA
GTCGTTGTGGGCGCGAGAGATCCCTGCTGCTCATGTCGCCATACGGGACG
TACGATGGACGCCGGAGCTCGTGCCTTTGGTGGATGCGTTACGTGGTGCG
TCGAGAGGAATGCTGCcttcgagggcgggggggacgaTCCTGATGACCAT
GAGAATGATGGGTGATAACGGCGACGTTAACGATGaaattgagggaggga
ggaaatacGGAAGGACGGTGGGAAAGAGCGTTTGGGCTGAGTCCCAAAGA
TGAATGCAATCCGACCCACAGCAAATTCAGGGTACGCCTTCGTTGGCTGC
CTCTACAGCagtgcctcccccctcgctgcaACCCCTTACGCAACAAATGC
GAAACTACCTTGCTCAGCAAGACTACATAAATGCCCTTCGCGTCGCAAAT
GACGTTGAAATATTGCTTCTGACAAACAAACTATGCCCTGGTGACGGAAA
TCCTCAACTCCTGCTTGCTGTTCAGCTGCTTTTACACCTTATCCTGGACG
ATCTGGCCAACGCCCGGCTTTTATGGCGGCGCATCCCCAACGAGCTGAAG
GACGTGTCAATCCTTGAGGGGAGACAACTGTCAAAGGCGTGGGACGTGGG
AAAGTCGTTGTGGGCGCGAGAGATCCCTGCTGCTCATGTCGCCATACGGG
ACGTACGATGGACGCCGGAGCTCGTGCCTTTGGTGGATGCGTTACGTGGT
GCGTCGAGAGGAATGCTGCcttcgagggcgggggggacgaTCCTGATGAC
CATGAGAATGATGGGTGATAACGGCGACGTTAACGATGaaattgagggag
ggaggaaatacGGAAGGACGGTGGGAAAGAGCGTTTGGGCTGAGTCCCAA
AGATGAATGCAATCCGACCCACAGCAAATTCAGGGTACGCCTTCGTTGGC
TGCCTCTACAGCagtgcctcccccctcgctgcaACCCCTTACGCAACAAA
TGCGAAACTACCTTGCTCAGCAAGACTACATAAATGCCCTTCGCGTCGCA
AATGACGTTGAAATATTGCTTCTGACAAACAAACTATGCCCTGGTGACGG
AAATCCTCAACTCCTGCTTGCTGTTCAGCTGCTTTTACACCTTATCCTGG
ACGATCTGGCCAACGCCCGGCTTTTATGGCGGCGCATCCCCAACGAGCTG
AAGGACGTGTCAATCCTTGAGGGGAGACAACTGTCAAAGGCGTGGGACGT
GGGAAAGTCGTTGTGGGCGCGAGAGATCCCTGCTGCTCATGTCGCCATAC
GGGACGTACGATGGACGCCGGAGCTCGTGCCTTTGGTGGATGCGTTACGT
GGTGCGTCGAGAGGAATGCTGCcttcgagggcgggggggacgaTCCTGAT
GACCATGAGAATGATGGGTGATAACGGCGACGTTAACGATGaaattgagg
gagggaggaaatacGGAAGGACGGTGGGAAAGAGCGTTTGGGCTGAGTCC
CAAAGATGAATGCAATCCGACCCACAGCAAATTCAGGGTACGCCTTCGTT
GGCTGCCTCTACAGCagtgcctcccccctcgctgcaACCCCTTACGCAAC
AAATGCGAAACTACCTTGCTCAGCAAGACTACATAAATGCCCTTCGCGTC
GCAAATGACGTTGAAATATTGCTTCTGACAAACAAACTATGCCCTGGTGA
CGGAAATCCTCAACTCCTGCTTGCTGTTCAGCTGCTTTTACACCTTATCC
TGGACGATCTGGCCAACGCCCGGCTTTTATGGCGGCGCATCCCCAACGAG
CTGAAGGACGTGTCAATCCTTGAGGGGAGACAACTGTCAAAGGCGTGGGA
CGTGGGAAAGTCGTTGTGGGCGCGAGAGATCCCTGCTGCTCATGTCGCCA
TACGGGACGTACGATGGACGCCGGAGCTCGTGCCTTTGGTGGATGCGTTA
CGTGGTGCGTCGAGAGGAATGCTGCcttcgagggcgggggggacgaTCCT
GATGACCATGAGAATGATGGGTGATAACGGCGACGTTAACGATGaaattg
agggagggaggaaatacGGAAGGACGGTGGGAAAGAGCGTTTGGGCTGAG
TCCCAAAGATGA

Synonyms

Publications