EWM28412.1, cds2255 (CDS) Nannochloropsis gaditana

Overview
NameEWM28412.1
Unique Namecds2255
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1314512..1314679 +
Alignment locationCM002458.1:1314787..1314869 +
Alignment locationCM002458.1:1314955..1315068 +
Alignment locationCM002458.1:1315188..1315425 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28412.1
ProductCOP9 signalosome, subunit CSN8
Orig transcript idgnl|cribi|Naga_100088g15.1231.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1314512..1314679 +
CM002458.1supercontigCM002458.1:1314787..1314869 +
CM002458.1supercontigCM002458.1:1314955..1315068 +
CM002458.1supercontigCM002458.1:1315188..1315425 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|585110797|gb|EWM28412.1| (COP9 signalosome, subunit CSN8 [Nannochloropsis gaditana])

HSP 1 Score: 401.749 bits (1031), Expect = 1.373e-141
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR 200
            MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR
Sbjct:    1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR 200          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|553185125|ref|XP_005854205.1| (cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526] >gi|422294859|gb|EKU22159.1| cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 250.751 bits (639), Expect = 1.600e-81
Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0
Query:    1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLT--------------NKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALR 148
            MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLT              NKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELK+VS LEGRQLSKAWDVGKSLWAREIPAAHVAIRDV+WTPELVPLVDALR
Sbjct:    1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTQLTLPGHHLHISQTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKNVSTLEGRQLSKAWDVGKSLWAREIPAAHVAIRDVQWTPELVPLVDALR 162          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1175840051|ref|XP_020573550.1| (COP9 signalosome complex subunit 8 [Phalaenopsis equestris] >gi|1175840054|ref|XP_020573551.1| COP9 signalosome complex subunit 8 [Phalaenopsis equestris] >gi|1175840056|ref|XP_020573552.1| COP9 signalosome complex subunit 8 [Phalaenopsis equestris])

HSP 1 Score: 70.8626 bits (172), Expect = 1.020e-11
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   72 AVQLLLHLILDDLANARLLWRRIPNELKDVSILEGR-QLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRG-----MLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTV 190
            ++ LL H+ ++DL +AR LW+ IP+ +K     E R ++  AW +G+ LW RE    + AIR   W+PE + LV A R +        ++ + +  ++  T + +G NGD  D I    ++G T+
Sbjct:   43 SIHLLGHIYVNDLNSARFLWKSIPSRIK-----ESRAEIVAAWKIGQCLWNREYAGVYAAIRGFDWSPEALGLVTAFRESYTKRNFQLLVSAYSTISVTDTAQFLGMNGD--DAISYALQHGWTL 160          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|697514422|ref|XP_009684097.1| (PREDICTED: COP9 signalosome complex subunit 8 [Struthio camelus australis])

HSP 1 Score: 70.4774 bits (171), Expect = 1.227e-11
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   54 LLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152
            L++ NK+ PG     L+    L L+L+ +D+ NAR LW+RIP  +K  +     +L   W VG+ +W R+ P  +  I   +W+  + P+++ALR A+R
Sbjct:    3 LVMMNKMAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSAN----AELGAVWSVGQRIWQRDFPGIYTTIGAHQWSETIQPIMEALRDATR 97          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|33243054|gb|AAQ01197.1| (COP9 [Oryza sativa Japonica Group] >gi|68611254|emb|CAD41016.3| OSJNBa0042L16.5 [Oryza sativa Japonica Group])

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = 0
Query:   36 LAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGD 175
            LA + Y +   + +D+  L   ++    DG P    AV LL HL L+DL +AR LW+  P E KD       +L+  W +G+ LW R+    + A +   W+PE+   V A  G    +   ++G + + T     + G+
Sbjct:   10 LAGKSYSSVAPLCDDL-FLQAASRGAATDGWP---YAVHLLAHLYLNDLNSARFLWKSTPQEAKDAR----PELAAVWRIGQCLWNRDYAGVYAAAQGFEWSPEIADFVAAFLGHHFVVWVGKSGDSDVHTYTSWSNCGN 141          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1179570290|ref|XP_020694980.1| (COP9 signalosome complex subunit 8 isoform X1 [Dendrobium catenatum])

HSP 1 Score: 67.781 bits (164), Expect = 1.629e-10
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0
Query:   72 AVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152
            ++ LL HL ++DL +AR LW+ IP+ +K+       ++  AW +G+ LW R+    + AIR   W+PE + LV A  G+ R
Sbjct:   43 SIHLLGHLYVNDLNSARFLWKSIPSGIKE----SQAEVVAAWKIGQCLWIRDYAGVYAAIRGFNWSPEALGLVTAFEGSQR 119          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|617515791|ref|XP_007543363.1| (PREDICTED: COP9 signalosome complex subunit 8-like [Poecilia formosa])

HSP 1 Score: 65.4698 bits (158), Expect = 2.276e-10
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRG 149
            G   PQ+  A  L L+L+ +D+ NAR LW+RIP  +K  +     +L+  W VG+ +W R+ P  + AI   +W+  ++P+++ALRG
Sbjct:   28 GIATPQVY-AQMLALYLLNNDMNNARYLWKRIPQAIKSAN----PELAAIWAVGQRIWQRDFPGIYTAIAAHQWSENILPVMEALRG 109          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1158937928|ref|XP_020317297.1| (COP9 signalosome complex subunit 8-like [Oncorhynchus kisutch] >gi|1211308038|ref|XP_021434381.1| COP9 signalosome complex subunit 8 isoform X1 [Oncorhynchus mykiss])

HSP 1 Score: 67.0106 bits (162), Expect = 2.392e-10
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152
            G   PQ+  A  L+L+L+ +D+ NAR LW+RIP  +K  ++    +L+  W VG+ +W R+ P  + AI   +W+  ++P+++ALR  +R
Sbjct:   36 GIATPQVY-AQLLVLYLLHNDMNNARYLWKRIPQAIKSANL----ELTAVWAVGQRIWQRDFPGIYSAIAAHQWSENILPVMEALRETTR 120          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1020508325|ref|XP_016093196.1| (PREDICTED: COP9 signalosome complex subunit 8-like [Sinocyclocheilus grahami])

HSP 1 Score: 65.0846 bits (157), Expect = 2.692e-10
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0
Query:   63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGAS--RGML 155
            G   PQ+   + L+L+L+ +DL NAR LW+RIP+ +K  +     +L+  W VG+ +W R+ P  +  I   +W+  ++P+++ALRG    R ML
Sbjct:   28 GIATPQVYSQL-LVLYLLHNDLNNARYLWKRIPHAIKTAN----PELAAIWAVGQRIWQRDFPGIYATIAAYQWSESILPVMEALRGTEIMRFML 117          
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|939259908|ref|XP_014249791.1| (PREDICTED: COP9 signalosome complex subunit 8 [Cimex lectularius])

HSP 1 Score: 66.6254 bits (161), Expect = 2.760e-10
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152
            G   PQL   + L ++L   DL NA+ LW+RIP  +K     +  +L   W+VGK++W RE+PA + A+    WT  + P++  L+   R
Sbjct:   24 GVSTPQLYGQL-LAIYLYQFDLCNAKFLWKRIPQNIKS----QNTELGHIWNVGKAMWQRELPAVYTALSSTSWTDNVKPIMVGLKDKVR 108          
The following BLAST results are available for this feature:
BLAST of EWM28412.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110797|gb|EWM28412.1|1.373e-141100.00COP9 signalosome, subunit CSN8 [Nannochloropsis ga... [more]
gi|553185125|ref|XP_005854205.1|1.600e-8189.51cop9 constitutive photomorphogenic subunit 8-like ... [more]
gi|1175840051|ref|XP_020573550.1|1.020e-1132.00COP9 signalosome complex subunit 8 [Phalaenopsis e... [more]
gi|697514422|ref|XP_009684097.1|1.227e-1134.34PREDICTED: COP9 signalosome complex subunit 8 [Str... [more]
gi|33243054|gb|AAQ01197.1|2.740e-1129.29COP9 [Oryza sativa Japonica Group] >gi|68611254|em... [more]
gi|1179570290|ref|XP_020694980.1|1.629e-1037.04COP9 signalosome complex subunit 8 isoform X1 [Den... [more]
gi|617515791|ref|XP_007543363.1|2.276e-1036.78PREDICTED: COP9 signalosome complex subunit 8-like... [more]
gi|1158937928|ref|XP_020317297.1|2.392e-1035.56COP9 signalosome complex subunit 8-like [Oncorhync... [more]
gi|1020508325|ref|XP_016093196.1|2.692e-1035.79PREDICTED: COP9 signalosome complex subunit 8-like... [more]
gi|939259908|ref|XP_014249791.1|2.760e-1035.56PREDICTED: COP9 signalosome complex subunit 8 [Cim... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2263rna2263Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications