EWM28412.1, cds2255 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|585110797|gb|EWM28412.1| (COP9 signalosome, subunit CSN8 [Nannochloropsis gaditana]) HSP 1 Score: 401.749 bits (1031), Expect = 1.373e-141 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 Query: 1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR 200 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR Sbjct: 1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTVGKSVWAESQR 200
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|553185125|ref|XP_005854205.1| (cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526] >gi|422294859|gb|EKU22159.1| cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 250.751 bits (639), Expect = 1.600e-81 Identity = 145/162 (89.51%), Postives = 147/162 (90.74%), Query Frame = 0 Query: 1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLT--------------NKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALR 148 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLT NKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELK+VS LEGRQLSKAWDVGKSLWAREIPAAHVAIRDV+WTPELVPLVDALR Sbjct: 1 MQSDPQQIQGTPSLAASTAVPPPSLQPLTQQMRNYLAQQDYINALRVANDVEILLLTQLTLPGHHLHISQTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKNVSTLEGRQLSKAWDVGKSLWAREIPAAHVAIRDVQWTPELVPLVDALR 162
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1175840051|ref|XP_020573550.1| (COP9 signalosome complex subunit 8 [Phalaenopsis equestris] >gi|1175840054|ref|XP_020573551.1| COP9 signalosome complex subunit 8 [Phalaenopsis equestris] >gi|1175840056|ref|XP_020573552.1| COP9 signalosome complex subunit 8 [Phalaenopsis equestris]) HSP 1 Score: 70.8626 bits (172), Expect = 1.020e-11 Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 0 Query: 72 AVQLLLHLILDDLANARLLWRRIPNELKDVSILEGR-QLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRG-----MLPSRAGGTILMTMRMMGDNGDVNDEIEGGRKYGRTV 190 ++ LL H+ ++DL +AR LW+ IP+ +K E R ++ AW +G+ LW RE + AIR W+PE + LV A R + ++ + + ++ T + +G NGD D I ++G T+ Sbjct: 43 SIHLLGHIYVNDLNSARFLWKSIPSRIK-----ESRAEIVAAWKIGQCLWNREYAGVYAAIRGFDWSPEALGLVTAFRESYTKRNFQLLVSAYSTISVTDTAQFLGMNGD--DAISYALQHGWTL 160
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|697514422|ref|XP_009684097.1| (PREDICTED: COP9 signalosome complex subunit 8 [Struthio camelus australis]) HSP 1 Score: 70.4774 bits (171), Expect = 1.227e-11 Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0 Query: 54 LLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152 L++ NK+ PG L+ L L+L+ +D+ NAR LW+RIP +K + +L W VG+ +W R+ P + I +W+ + P+++ALR A+R Sbjct: 3 LVMMNKMAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSAN----AELGAVWSVGQRIWQRDFPGIYTTIGAHQWSETIQPIMEALRDATR 97
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|33243054|gb|AAQ01197.1| (COP9 [Oryza sativa Japonica Group] >gi|68611254|emb|CAD41016.3| OSJNBa0042L16.5 [Oryza sativa Japonica Group]) HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11 Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = 0 Query: 36 LAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASRGMLPSRAGGTILMTMRMMGDNGD 175 LA + Y + + +D+ L ++ DG P AV LL HL L+DL +AR LW+ P E KD +L+ W +G+ LW R+ + A + W+PE+ V A G + ++G + + T + G+ Sbjct: 10 LAGKSYSSVAPLCDDL-FLQAASRGAATDGWP---YAVHLLAHLYLNDLNSARFLWKSTPQEAKDAR----PELAAVWRIGQCLWNRDYAGVYAAAQGFEWSPEIADFVAAFLGHHFVVWVGKSGDSDVHTYTSWSNCGN 141
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1179570290|ref|XP_020694980.1| (COP9 signalosome complex subunit 8 isoform X1 [Dendrobium catenatum]) HSP 1 Score: 67.781 bits (164), Expect = 1.629e-10 Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0 Query: 72 AVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152 ++ LL HL ++DL +AR LW+ IP+ +K+ ++ AW +G+ LW R+ + AIR W+PE + LV A G+ R Sbjct: 43 SIHLLGHLYVNDLNSARFLWKSIPSGIKE----SQAEVVAAWKIGQCLWIRDYAGVYAAIRGFNWSPEALGLVTAFEGSQR 119
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|617515791|ref|XP_007543363.1| (PREDICTED: COP9 signalosome complex subunit 8-like [Poecilia formosa]) HSP 1 Score: 65.4698 bits (158), Expect = 2.276e-10 Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 0 Query: 63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRG 149 G PQ+ A L L+L+ +D+ NAR LW+RIP +K + +L+ W VG+ +W R+ P + AI +W+ ++P+++ALRG Sbjct: 28 GIATPQVY-AQMLALYLLNNDMNNARYLWKRIPQAIKSAN----PELAAIWAVGQRIWQRDFPGIYTAIAAHQWSENILPVMEALRG 109
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1158937928|ref|XP_020317297.1| (COP9 signalosome complex subunit 8-like [Oncorhynchus kisutch] >gi|1211308038|ref|XP_021434381.1| COP9 signalosome complex subunit 8 isoform X1 [Oncorhynchus mykiss]) HSP 1 Score: 67.0106 bits (162), Expect = 2.392e-10 Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152 G PQ+ A L+L+L+ +D+ NAR LW+RIP +K ++ +L+ W VG+ +W R+ P + AI +W+ ++P+++ALR +R Sbjct: 36 GIATPQVY-AQLLVLYLLHNDMNNARYLWKRIPQAIKSANL----ELTAVWAVGQRIWQRDFPGIYSAIAAHQWSENILPVMEALRETTR 120
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|1020508325|ref|XP_016093196.1| (PREDICTED: COP9 signalosome complex subunit 8-like [Sinocyclocheilus grahami]) HSP 1 Score: 65.0846 bits (157), Expect = 2.692e-10 Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGAS--RGML 155 G PQ+ + L+L+L+ +DL NAR LW+RIP+ +K + +L+ W VG+ +W R+ P + I +W+ ++P+++ALRG R ML Sbjct: 28 GIATPQVYSQL-LVLYLLHNDLNNARYLWKRIPHAIKTAN----PELAAIWAVGQRIWQRDFPGIYATIAAYQWSESILPVMEALRGTEIMRFML 117
BLAST of EWM28412.1 vs. NCBI_GenBank
Match: gi|939259908|ref|XP_014249791.1| (PREDICTED: COP9 signalosome complex subunit 8 [Cimex lectularius]) HSP 1 Score: 66.6254 bits (161), Expect = 2.760e-10 Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 0 Query: 63 GDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRGASR 152 G PQL + L ++L DL NA+ LW+RIP +K + +L W+VGK++W RE+PA + A+ WT + P++ L+ R Sbjct: 24 GVSTPQLYGQL-LAIYLYQFDLCNAKFLWKRIPQNIKS----QNTELGHIWNVGKAMWQRELPAVYTALSSTSWTDNVKPIMVGLKDKVR 108 The following BLAST results are available for this feature:
BLAST of EWM28412.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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