rna2261, rna2261 (mRNA) Nannochloropsis gaditana

Overview
Namerna2261
Unique Namerna2261
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1333
Alignment locationCM002458.1:1309449..1310152 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100088g17.1239.mrna
Orig protein idgnl|cribi|Naga_100088g17.1239
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1309449..1310152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100088g17gene2162Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28420.1cds2253Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2261rna2261-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2261 ID=rna2261|Name=rna2261|organism=Nannochloropsis gaditana|type=mRNA|length=1333bp
TTGGCAATGGCCCGGGGGCGCCAGGGGGAGGGCGGGAAGGAGGGCGGGAG
GGAGGGCAAGGAGGAAAAGGGCAGTGGAAAGGCTTGGAGGGGAGCACGCG
CATACGACTGACGGGAGAAAGTGGGGTTATACGGAGTACGGACCGGGCCC
CTCGGCTAGGAGCATCGTTGCGGCGATCGGTGCGAGCCCGGCTTCTGACG
GCATTGACGGCGCGCCTGTACCACGAACACGGGCAGGAGATCGAAGAGCG
GGAGCTTCCCTTAGCCTACTTGATTTATCGTCTGTCAGAGGCGTGTCTAC
GTGGCGCCGACAATTCAGGAGAAGAAGGACGGGAAATGGGGGAAGAATTC
ATCCTGGCAGAGGCGCCCTGGTTGTTAAGCGACGACACTGAAGACGCGTC
CCTTCTGGCCCGCTTCCCAGCCCTCCTGGCCGCCTATCGTCGCGTCACGG
ATTCCTTGTTCTGCCCCTTTGACTCGACTGCCCCCCCCCCGACTGTCTCC
TCCCCGTCCCCCAGTGCGTCCTGCCCGCTTCCTTCCCCCCTCGCCTTTTT
TTCACTCAGGAGGAATTCATCCTCCTCCCCCACCTCCTTCTCCGCGCCCG
CCCCCGGATCTTTCTCTCGCACGGCAGTTCTTTTCCGCCACTTCTTGCAG
AGCGAGGCCCCGCGCGCGTATTCGAAGCTAAGGAAAGCTCAACGTGAGCT
AGAGGGACAACTACAGGTCTTGTCGGCGCATGAGGGCGATAAAGGCGGAG
AGGGGCACTTAAACGAAAAAATAAAAGGCAATGAGAAAGCGTCGAGGGAA
GTTATGGCCTTAGAGGGCGAGGAAAAAGGAGAGTCATATGCCTCGAGACT
ATCACTTGGCCCGCAGGGCTGGCGAAAAGGGAGGGAGGCGGGAGATAGGA
CGGTGGGCGACGAGGGGGTCGAGGAGGAAGGAGAGGAGAGAGAAGACTTG
GAGGAGGCGTGGGCCCGAGTGCAGGCGGAGGAGGCAGCCGAACGTCGAGC
GGAAAAGAGAAGGGTGGTGGGTCGGTTGCTGGATAAATGGAAAATAGCGT
GGATGCTGTGGAGGAGCAAAGGAAGGTACAGGGTGAGGAGGGAAGAGGGG
GGCAGGAGGTACATTTAAGGGGGGATGATAGAAAATGTGTGGTCCGCGGA
GAGGGCGTCCTGGAAGAGGTCCAGGAAGAAAAGCAAAGGAAACTGACTGT
ACACAGCAGCAAAGGAAGCGCCACGGCATGTAACGGAATACATTTAAACC
TACTTGCCCATCTCTACATTCCTTCCGAGTATTTATTGGGTAGTACAGCG
AAAAAAAAGGAACAAAATATCAGGCGATGAATA
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protein sequence of rna2261

>rna2261-protein ID=rna2261-protein|Name=rna2261|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MVRQVEFSALRACHPSPLVSTSRMAFCPLPRTYLLPFRVMHVARSRQSLL
LAAPSSLPATLPHLLPTAHPLGQRAFTHTCLRIGTGLHAQILYILTEAAS
WPSRLFFSPFLLAGIPLCLALWSGLEHAWGWMQGRRRR
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mRNA from alignment at CM002458.1:1309449..1310152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2261 ID=rna2261|Name=rna2261|organism=Nannochloropsis gaditana|type=mRNA|length=704bp|location=Sequence derived from alignment at CM002458.1:1309449..1310152- (Nannochloropsis gaditana)
CCAGGGGTAATACAGGCGTTTTGGCGGCGTGTTTTCCGGCAGAGGGGCTC
GCATCATCACGCTCGATTCCTTCGCTTCTGCCTGGCCGCAGCGGGAGGAT
GGGGCTTCGCTTTTCCTTCCTTTCTGTTCATGAGATAGGGATCATATTTT
GAAGGATTGGAAAAGCTGATAAGCATTTTGAGGAGTTTTCAACAAAGATG
TGCGACGACGAGCGGCAGGCCAATTGAGCAGACGAGCGCCTAGCACTTCG
CATACAAGACCCGTAAAAGCTAGCATTCATGGTCCGCCAAGTGGAATTTT
CCGCCCTCCGCGCGTGTCATCCAAGTCCCTTGGTTTCGACGTCACGCATG
GCCTTTTGTCCCTTGCCACGTACTTATCTTCTTCCTTTCCGAGTCATGCA
CGTGGCTCGTTCGCGTCAGTCCCTTCTTTTGGCAGCTCCTTCATCCCTCC
CTGCTACCCTCCCACACCTCCTCCCCACGGCACATCCCCTCGGGCAACGG
GCCTTCACCCACACCTGCCTCCGCATCGGCACCGGTCTGCATGCTCAGAT
ACTCTACATCCTGACCGAGGCCGCCTCCTGGCCTTCTCGTCTTTTTTTCT
CCCCTTTTCTCCTCGCGGGGATCCCTCTGTGCCTCGCGCTCTGGTCCGGC
CTGGAGCATGCGTGGGGATGGATGCAGGGGCGGCGGCGAAGGTAAGAGAC
ACCC
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Coding sequence (CDS) from alignment at CM002458.1:1309449..1310152-

>rna2261 ID=rna2261|Name=rna2261|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at CM002458.1:1309449..1310152- (Nannochloropsis gaditana)
ATGGTCCGCCAAGTGGAATTTTCCGCCCTCCGCGCGTGTCATCCAAGTCC
CTTGGTTTCGACGTCACGCATGGCCTTTTGTCCCTTGCCACGTACTTATC
TTCTTCCTTTCCGAGTCATGCACGTGGCTCGTTCGCGTCAGTCCCTTCTT
TTGGCAGCTCCTTCATCCCTCCCTGCTACCCTCCCACACCTCCTCCCCAC
GGCACATCCCCTCGGGCAACGGGCCTTCACCCACACCTGCCTCCGCATCG
GCACCGGTCTGCATGCTCAGATACTCTACATCCTGACCGAGGCCGCCTCC
TGGCCTTCTCGTCTTTTTTTCTCCCCTTTTCTCCTCGCGGGGATCCCTCT
GTGCCTCGCGCTCTGGTCCGGCCTGGAGCATGCGTGGGGATGGATGCAGG
GGCGGCGGCGAAGGTAA
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Synonyms
Publications