EWM28420.1, cds2253 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28420.1
Unique Name	cds2253
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:1309458..1309874 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28420.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100088g17.1239.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1309458..1309874 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

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BLAST of EWM28420.1 vs. NCBI_GenBank
Match: gi|585110805|gb|EWM28420.1| (hypothetical protein Naga_100088g17 [Nannochloropsis gaditana])

HSP 1 Score: 271.937 bits (694), Expect = 3.446e-92
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query:    1 MVRQVEFSALRACHPSPLVSTSRMAFCPLPRTYLLPFRVMHVARSRQSLLLAAPSSLPATLPHLLPTAHPLGQRAFTHTCLRIGTGLHAQILYILTEAASWPSRLFFSPFLLAGIPLCLALWSGLEHAWGWMQGRRRR 138
            MVRQVEFSALRACHPSPLVSTSRMAFCPLPRTYLLPFRVMHVARSRQSLLLAAPSSLPATLPHLLPTAHPLGQRAFTHTCLRIGTGLHAQILYILTEAASWPSRLFFSPFLLAGIPLCLALWSGLEHAWGWMQGRRRR
Sbjct:    1 MVRQVEFSALRACHPSPLVSTSRMAFCPLPRTYLLPFRVMHVARSRQSLLLAAPSSLPATLPHLLPTAHPLGQRAFTHTCLRIGTGLHAQILYILTEAASWPSRLFFSPFLLAGIPLCLALWSGLEHAWGWMQGRRRR 138

The following BLAST results are available for this feature:

BLAST of EWM28420.1 vs. NCBI_GenBank

BLAST of EWM28420.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110805\|gb\|EWM28420.1\|	3.446e-92	100.00	hypothetical protein Naga_100088g17 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2261	rna2261	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications