rna2248, rna2248 (mRNA) Nannochloropsis gaditana

Overview
Namerna2248
Unique Namerna2248
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length908
Alignment locationCM002458.1:1251578..1252919 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101843g1.2563.mrna
Orig protein idgnl|cribi|Naga_101843g1.2563
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1251578..1252919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101843g1gene2149Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2248rna2248-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28433.1cds2240Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2248 ID=rna2248|Name=rna2248|organism=Nannochloropsis gaditana|type=mRNA|length=908bp
ATGTCCGGGGGCGGACGGGTTGGGGGGCCCCTCTTCTCGGCGGGAGAGGA
AGCCACCCTCGGCTCCCACATCGGGCTCATCGCCCTCTCGGTGTTTTTCG
GCTATCTCCTCAACCTCTCCCTCAAGTACCTCGAGCTGAATCGACCTTTC
CTCCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCAT
GGTTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTA
GGTTCAAGCCCGACTGGTTCCACCGACTGGCGGGTTTCAGCTTGGACTTG
ATGGTCATCGCCGCCATTTCCTCCCAGCGATTCGACTACTACAAGAAGGC
ACGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGAGTGGCCAGCTGGAGGACCGAAAGTGTGGTCGCAGC
GAAACGATTGAATGCGTGTTGGAGATATCGCCGCGAATCAAACATGTGAT
ATACGCGTCTCCAGAGTATCTTTCCAACTCTGAGAGTGATGGGATGATAA
GGAGGAAACCCTGAAGGAGATAGGGCGATTGATCACCTCCCTCCCATTCT
TGAGCCTCCCCTTCCTCCCTCCTTCCTTCCTTTTCTGCTAGGTCGACAAT
CTCGAGTTGGTGATCATCATCATCCTGGGATGCGTGTTGTGGAACCTTGT
GGCCTTCTTCGCCTTTGCCAAGCGCATGTTTCCAAATTTTTGGTGGGGAG
GGAGGGAGGGAGAATGGGAGGGAGGGAGGGAGAGGCACCGAGAGCGGGGA
GGCAGTACGGACGGGTACATGCCTAAGAGGGAACACTGTTATGGAGGCAT
CTAGCGAGAAGTCTCGCTTTCATTACCATGTCCACACTCCCCGGTCCATC
CCTCCCCA
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protein sequence of rna2248

>rna2248-protein ID=rna2248-protein|Name=rna2248|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPF
LRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDL
MVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW
WGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI
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mRNA from alignment at CM002458.1:1251578..1252919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2248 ID=rna2248|Name=rna2248|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp|location=Sequence derived from alignment at CM002458.1:1251578..1252919+ (Nannochloropsis gaditana)
ATGTCCGGGGGCGGACGGGTTGGGGGGTAAGTGGGCgcaggggagaaggg
cgggggtggTTCGAAGGCACAGGACAATAGAGGCATAGCAGGTCCCCTAG
TGACGTGGCGCGaatccctttctcctctctccctccctgaatCCCGCCCT
GGACCAGGCCCCTCTTCtcggcgggagaggaagccaCCCTCGGCTCCCAC
ATCGGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATCTCCTcaacctctc
cctcaagTACCTCGgtgaggacgggagggagggagggagggaggggcgga
gggcgggtctGGGGAGTGGGAATCGTCCCATCGCGCAACTCGTCCTTCAC
GCcctgccgccctctcccccttcctgtctaGAGCTGAATCGACCTTTCCT
CCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCATGG
TTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTAGG
TACGTGACcaagggaaggggtggggagggaggaagtgaaggagggcggga
aagaggaagggaggaaccAAGTGCCTGCAATTGTTCCAACGTTTCCGCTT
AATATGTAATTTGAGCGCGACTGTCCTCCATACTCTGCTTACTCACTCCT
GATTCTgactccctcccgccctccctcgcctccagGTTCAAGCCCGACTG
GTTCCACCGACTGGCGGGTTTCAGCTTGGACTTGATGGTCATcgccgcca
tttcctcccagcGATTCGACTACTACAAGAAGGcacggacgggagggagg
gagggagggagggagggagggagggagggagggagggagggagggaggag
tggccAGCTGGAGGACCGAAAGTGTGGTCGCAGCGAAACGATTGAATGCG
TGTTGGAGATATCGCCGCGAATCAAACATGTGATATACGCGTCTCCAGAG
TATCTTTCCAACTCTGAGAGTGATGGGATGATAAGGAGGAAACCCTGAAG
GAGATAGGGCGATTgatcacctccctcccattcttgagcctccccttcct
ccctccttccttccttttctgcTAGGTCGACAATCTCGAGTTGGtgatca
tcatcatcctggGATGCGTGTTGTGGAACCTTGtggccttcttcgccttt
GCCAAGCGCATGTTTCCAAATTtttggtggggagggagggagggagaatg
ggagggagggagggagaggcaccGAGAGCGGGGAGGCAGTACGGACGGGT
ACATGCCTAAGAGGGAACACTGTTATGGAGGCATCTAGCGAGAAGTCTCG
CTTTCATTACCATGTCCACACTCCCCggtccatccctcccca
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Coding sequence (CDS) from alignment at CM002458.1:1251578..1252919+

>rna2248 ID=rna2248|Name=rna2248|organism=Nannochloropsis gaditana|type=CDS|length=2805bp|location=Sequence derived from alignment at CM002458.1:1251578..1252919+ (Nannochloropsis gaditana)
ATGTCCGGGGGCGGACGGGTTGGGGGGCCCCTCTTCtcggcgggagagga
agccaCCCTCGGCTCCCACATCGGGCTCATCGCCCTCTCGGTGTTTTTCG
GCTATCTCCTcaacctctccctcaagTACCTCGAGCTGAATCGACCTTTC
CTCCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCAT
GGTTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTA
GGTTCAAGCCCGACTGGTTCCACCGACTGGCGGGTTTCAGCTTGGACTTG
ATGGTCATcgccgccatttcctcccagcGATTCGACTACTACAAGAAGGT
CGACAATCTCGAGTTGGtgatcatcatcatcctggGATGCGTGTTGTGGA
ACCTTGtggccttcttcgcctttGCCAAGCGCATGTTTCCAAATTtttgg
tggggagggagggagggagaatgggagggagggagggagaggcaccGAGA
GCGGGGAGGCAGTACGGACGGGTACATGCCTAAGAGGGAACACTGTTATG
GAGGCATCTAGATGTCCGGGGGCGGACGGGTTGGGGGGCCCCTCTTCtcg
gcgggagaggaagccaCCCTCGGCTCCCACATCGGGCTCATCGCCCTCTC
GGTGTTTTTCGGCTATCTCCTcaacctctccctcaagTACCTCGAGCTGA
ATCGACCTTTCCTCCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTC
AAGATTTGCATGGTTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGC
GTCAAACCTTAGGTTCAAGCCCGACTGGTTCCACCGACTGGCGGGTTTCA
GCTTGGACTTGATGGTCATcgccgccatttcctcccagcGATTCGACTAC
TACAAGAAGGTCGACAATCTCGAGTTGGtgatcatcatcatcctggGATG
CGTGTTGTGGAACCTTGtggccttcttcgcctttGCCAAGCGCATGTTTC
CAAATTtttggtggggagggagggagggagaatgggagggagggagggag
aggcaccGAGAGCGGGGAGGCAGTACGGACGGGTACATGCCTAAGAGGGA
ACACTGTTATGGAGGCATCTAGATGTCCGGGGGCGGACGGGTTGGGGGGC
CCCTCTTCtcggcgggagaggaagccaCCCTCGGCTCCCACATCGGGCTC
ATCGCCCTCTCGGTGTTTTTCGGCTATCTCCTcaacctctccctcaagTA
CCTCGAGCTGAATCGACCTTTCCTCCGCAACCACCACCTGGTCTCGGGTA
TCCGCCTCTTCAAGATTTGCATGGTTGCCGCGGTGGTCTGTATGGTGACG
GTGCGGGCTGCGTCAAACCTTAGGTTCAAGCCCGACTGGTTCCACCGACT
GGCGGGTTTCAGCTTGGACTTGATGGTCATcgccgccatttcctcccagc
GATTCGACTACTACAAGAAGGTCGACAATCTCGAGTTGGtgatcatcatc
atcctggGATGCGTGTTGTGGAACCTTGtggccttcttcgcctttGCCAA
GCGCATGTTTCCAAATTtttggtggggagggagggagggagaatgggagg
gagggagggagaggcaccGAGAGCGGGGAGGCAGTACGGACGGGTACATG
CCTAAGAGGGAACACTGTTATGGAGGCATCTAGATGTCCGGGGGCGGACG
GGTTGGGGGGCCCCTCTTCtcggcgggagaggaagccaCCCTCGGCTCCC
ACATCGGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATCTCCTcaacctc
tccctcaagTACCTCGAGCTGAATCGACCTTTCCTCCGCAACCACCACCT
GGTCTCGGGTATCCGCCTCTTCAAGATTTGCATGGTTGCCGCGGTGGTCT
GTATGGTGACGGTGCGGGCTGCGTCAAACCTTAGGTTCAAGCCCGACTGG
TTCCACCGACTGGCGGGTTTCAGCTTGGACTTGATGGTCATcgccgccat
ttcctcccagcGATTCGACTACTACAAGAAGGTCGACAATCTCGAGTTGG
tgatcatcatcatcctggGATGCGTGTTGTGGAACCTTGtggccttcttc
gcctttGCCAAGCGCATGTTTCCAAATTtttggtggggagggagggaggg
agaatgggagggagggagggagaggcaccGAGAGCGGGGAGGCAGTACGG
ACGGGTACATGCCTAAGAGGGAACACTGTTATGGAGGCATCTAGATGTCC
GGGGGCGGACGGGTTGGGGGGCCCCTCTTCtcggcgggagaggaagccaC
CCTCGGCTCCCACATCGGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATC
TCCTcaacctctccctcaagTACCTCGAGCTGAATCGACCTTTCCTCCGC
AACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCATGGTTGC
CGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTAGGTTCA
AGCCCGACTGGTTCCACCGACTGGCGGGTTTCAGCTTGGACTTGATGGTC
ATcgccgccatttcctcccagcGATTCGACTACTACAAGAAGGTCGACAA
TCTCGAGTTGGtgatcatcatcatcctggGATGCGTGTTGTGGAACCTTG
tggccttcttcgcctttGCCAAGCGCATGTTTCCAAATTtttggtgggga
gggagggagggagaatgggagggagggagggagaggcaccGAGAGCGGGG
AGGCAGTACGGACGGGTACATGCCTAAGAGGGAACACTGTTATGGAGGCA
TCTAG
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Synonyms
Publications