EWM28433.1, cds2240 (CDS) Nannochloropsis gaditana

Overview
NameEWM28433.1
Unique Namecds2240
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1251578..1251603 +
Alignment locationCM002458.1:1251735..1251841 +
Alignment locationCM002458.1:1251959..1252076 +
Alignment locationCM002458.1:1252263..1252359 +
Alignment locationCM002458.1:1252653..1252865 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28433.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101843g1.2563.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1251578..1251603 +
CM002458.1supercontigCM002458.1:1251735..1251841 +
CM002458.1supercontigCM002458.1:1251959..1252076 +
CM002458.1supercontigCM002458.1:1252263..1252359 +
CM002458.1supercontigCM002458.1:1252653..1252865 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|585110827|gb|EWM28433.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana])

HSP 1 Score: 379.793 bits (974), Expect = 2.075e-133
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI 186
            MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI
Sbjct:    1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI 186          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|585110828|gb|EWM28434.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana])

HSP 1 Score: 239.195 bits (609), Expect = 8.137e-78
Identity = 130/171 (76.02%), Postives = 130/171 (76.02%), Query Frame = 0
Query:    1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGS 171
            MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKK                                   GGREG  EGGRE  RE G S
Sbjct:    1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKART--------------------------------GGREGGREGGREGGREGGRS 139          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|298706590|emb|CBJ29549.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.153 bits (274), Expect = 1.057e-24
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 0
Query:    2 SGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150
            S  GR  GP       A LG+H+ L A+SV   +L++L +++LE    +   HH++SG RLF++ M AA++ M  +R  S  R+  +WF RL+G  LDLM  AAISS  F       N    ++++  CVLWN+  F   A RMFPNFW
Sbjct:  301 SVAGRDRGPTLGI-HRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIPNKFNAAF-LLVLFSCVLWNVGVFIVLAPRMFPNFW 447          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1055993324|ref|WP_067526516.1| (sodium:glutamate symporter [Nocardia uniformis])

HSP 1 Score: 66.6254 bits (161), Expect = 1.144e-9
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 0
Query:   19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPD------WFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151
            TL  H GL+AL+V  G+L+   LK++E  + +  +  L + + LF I M+  ++  + ++     RF  D         RL GFSLD++VIAA+ +          N+   +++    + W+L AF   A RM PNFW+
Sbjct:  246 TLTLHFGLLALAVLIGWLILTGLKWVE-TQLWAESFELFAHVPLFPIAMIGGIIVQLAIQ-----RFDRDEIVDVQLVERLQGFSLDVLVIAALGTLSLTAIAA--NIGPFLLLAGVGLAWSLAAFLFLAPRMMPNFWF 376          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1207608146|ref|WP_087974301.1| (sodium:glutamate symporter [Oceanobacillus rekensis])

HSP 1 Score: 66.6254 bits (161), Expect = 1.154e-9
Identity = 38/132 (28.79%), Postives = 67/132 (50.76%), Query Frame = 0
Query:   20 LGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKP-DWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150
            L  H  ++AL++  GY+L  S  +LE +   L    L++ + LF   M+  +V  + +    N          R+ GFSLD++++AAI +   D     DN    ++I +  + WN++ FF  A +M P++W
Sbjct:  248 LSLHFAVVALAIITGYILLQSFVWLEAS---LFGSDLMTYVPLFPFAMIGGIVVQLFLNKVDNAYLVDRQMISRIQGFSLDILILAAIGTVSLDVIG--DNFIPFLLIAITGIAWNVIGFFVLAPKMIPSYW 374          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1110704237|ref|WP_071930123.1| (sodium:glutamate symporter [Nocardia soli] >gi|1108545289|gb|APE36938.1| sodium:glutamate symporter [Nocardia soli])

HSP 1 Score: 65.855 bits (159), Expect = 2.170e-9
Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151
            TL  H GL+AL V  G+L+   L+++E ++ +  +  L + + LF I MV  ++  V +++             RL GFSLD++VIAA+ +          N+   +++    + W + AF   A RM PNFW+
Sbjct:  246 TLTLHFGLLALGVLIGWLMLTGLQWIE-SKLWADSFELFTYVPLFPIAMVGGIIVQVAIQSFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|659885040|ref|WP_029931748.1| (sodium:glutamate symporter [Nocardia otitidiscaviarum])

HSP 1 Score: 65.855 bits (159), Expect = 2.342e-9
Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151
            TL  H GL+AL V  G+LL   ++++E ++ +  +  L S + LF I MV  ++  + ++A             RL GFSLD++VIAA+ +          N+   +++    + W + AF   A RM PNFW+
Sbjct:  246 TLTLHFGLLALGVLIGWLLLTGIQWVE-SKLWADSFELFSYVPLFPIAMVGGIIVQLAIQAFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1056073449|ref|WP_067598995.1| (sodium:glutamate symporter [Nocardiopsis listeri])

HSP 1 Score: 65.0846 bits (157), Expect = 3.917e-9
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   23 HIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVC-MVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151
            H GL+A++V  G L+   L++LE    +     +++ + LF + M+  +V  MV  R   N         R+ G SLD+++IAA+++         DN+    I+ +  +LW L AF   A RM PNFW+
Sbjct:  258 HFGLVAVAVIIGQLILSGLQWLE-QALWAETIEVMAYVPLFPLAMIGGIVVQMVIDRFDRNDIVDERSVERIQGLSLDVLIIAAMATLSLQAIA--DNILTFAILAISGILWCLFAFLFLAPRMMPNFWF 384          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1207676452|ref|WP_088036822.1| (sodium:glutamate symporter [Bacillus sp. CCTCCAB-2014251])

HSP 1 Score: 65.0846 bits (157), Expect = 3.950e-9
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 0
Query:   19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTV-RAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150
            TL  H+G I LS+  G+LL   L  +E    ++ N  L + + LF + MV AV+  V + +A  +        +R+ G +LD+++++AI++         D L   I++ L  + WNL AF   A +M P++W
Sbjct:  244 TLTVHLGYIGLSILIGFLLLEGLIIIE-EIFWIDNIELFTHLPLFPLAMVGAVIVQVFMSKAVKHEMLDRGMVNRIQGLALDILIVSAIATLSLAVIA--DYLVPFILMALAAIGWNLFAFLVLAPKMMPDYW 373          
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|748255002|ref|WP_039810359.1| (sodium:glutamate symporter [Nocardia otitidiscaviarum])

HSP 1 Score: 65.0846 bits (157), Expect = 4.398e-9
Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151
            TL  H GL+A+ V  G+LL   ++++E ++ +  +  L S + LF I MV  ++  + ++A             RL GFSLD++VIAA+ +          N+   +++    + W + AF   A RM PNFW+
Sbjct:  246 TLTLHFGLLAMGVLIGWLLLTGIQWVE-SKLWADSFELFSYVPLFPIAMVGGIIVQLAIQAFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376          
The following BLAST results are available for this feature:
BLAST of EWM28433.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110827|gb|EWM28433.1|2.075e-133100.00hypothetical protein Naga_101843g1 [Nannochloropsi... [more]
gi|585110828|gb|EWM28434.1|8.137e-7876.02hypothetical protein Naga_101843g1 [Nannochloropsi... [more]
gi|298706590|emb|CBJ29549.1|1.057e-2440.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|1055993324|ref|WP_067526516.1|1.144e-931.65sodium:glutamate symporter [Nocardia uniformis][more]
gi|1207608146|ref|WP_087974301.1|1.154e-928.79sodium:glutamate symporter [Oceanobacillus rekensi... [more]
gi|1110704237|ref|WP_071930123.1|2.170e-930.60sodium:glutamate symporter [Nocardia soli] >gi|110... [more]
gi|659885040|ref|WP_029931748.1|2.342e-931.34sodium:glutamate symporter [Nocardia otitidiscavia... [more]
gi|1056073449|ref|WP_067598995.1|3.917e-931.54sodium:glutamate symporter [Nocardiopsis listeri][more]
gi|1207676452|ref|WP_088036822.1|3.950e-930.83sodium:glutamate symporter [Bacillus sp. CCTCCAB-2... [more]
gi|748255002|ref|WP_039810359.1|4.398e-930.60sodium:glutamate symporter [Nocardia otitidiscavia... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2248rna2248Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications