EWM28433.1, cds2240 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|585110827|gb|EWM28433.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana]) HSP 1 Score: 379.793 bits (974), Expect = 2.075e-133 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 Query: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI 186 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI Sbjct: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGSTDGYMPKREHCYGGI 186
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|585110828|gb|EWM28434.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana]) HSP 1 Score: 239.195 bits (609), Expect = 8.137e-78 Identity = 130/171 (76.02%), Postives = 130/171 (76.02%), Query Frame = 0 Query: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGS 171 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKK GGREG EGGRE RE G S Sbjct: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKART--------------------------------GGREGGREGGREGGREGGRS 139
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|298706590|emb|CBJ29549.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 110.153 bits (274), Expect = 1.057e-24 Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 0 Query: 2 SGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150 S GR GP A LG+H+ L A+SV +L++L +++LE + HH++SG RLF++ M AA++ M +R S R+ +WF RL+G LDLM AAISS F N ++++ CVLWN+ F A RMFPNFW Sbjct: 301 SVAGRDRGPTLGI-HRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIPNKFNAAF-LLVLFSCVLWNVGVFIVLAPRMFPNFW 447
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1055993324|ref|WP_067526516.1| (sodium:glutamate symporter [Nocardia uniformis]) HSP 1 Score: 66.6254 bits (161), Expect = 1.144e-9 Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 0 Query: 19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPD------WFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151 TL H GL+AL+V G+L+ LK++E + + + L + + LF I M+ ++ + ++ RF D RL GFSLD++VIAA+ + N+ +++ + W+L AF A RM PNFW+ Sbjct: 246 TLTLHFGLLALAVLIGWLILTGLKWVE-TQLWAESFELFAHVPLFPIAMIGGIIVQLAIQ-----RFDRDEIVDVQLVERLQGFSLDVLVIAALGTLSLTAIAA--NIGPFLLLAGVGLAWSLAAFLFLAPRMMPNFWF 376
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1207608146|ref|WP_087974301.1| (sodium:glutamate symporter [Oceanobacillus rekensis]) HSP 1 Score: 66.6254 bits (161), Expect = 1.154e-9 Identity = 38/132 (28.79%), Postives = 67/132 (50.76%), Query Frame = 0 Query: 20 LGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKP-DWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150 L H ++AL++ GY+L S +LE + L L++ + LF M+ +V + + N R+ GFSLD++++AAI + D DN ++I + + WN++ FF A +M P++W Sbjct: 248 LSLHFAVVALAIITGYILLQSFVWLEAS---LFGSDLMTYVPLFPFAMIGGIVVQLFLNKVDNAYLVDRQMISRIQGFSLDILILAAIGTVSLDVIG--DNFIPFLLIAITGIAWNVIGFFVLAPKMIPSYW 374
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1110704237|ref|WP_071930123.1| (sodium:glutamate symporter [Nocardia soli] >gi|1108545289|gb|APE36938.1| sodium:glutamate symporter [Nocardia soli]) HSP 1 Score: 65.855 bits (159), Expect = 2.170e-9 Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 0 Query: 19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151 TL H GL+AL V G+L+ L+++E ++ + + L + + LF I MV ++ V +++ RL GFSLD++VIAA+ + N+ +++ + W + AF A RM PNFW+ Sbjct: 246 TLTLHFGLLALGVLIGWLMLTGLQWIE-SKLWADSFELFTYVPLFPIAMVGGIIVQVAIQSFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|659885040|ref|WP_029931748.1| (sodium:glutamate symporter [Nocardia otitidiscaviarum]) HSP 1 Score: 65.855 bits (159), Expect = 2.342e-9 Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 0 Query: 19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151 TL H GL+AL V G+LL ++++E ++ + + L S + LF I MV ++ + ++A RL GFSLD++VIAA+ + N+ +++ + W + AF A RM PNFW+ Sbjct: 246 TLTLHFGLLALGVLIGWLLLTGIQWVE-SKLWADSFELFSYVPLFPIAMVGGIIVQLAIQAFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1056073449|ref|WP_067598995.1| (sodium:glutamate symporter [Nocardiopsis listeri]) HSP 1 Score: 65.0846 bits (157), Expect = 3.917e-9 Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0 Query: 23 HIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVC-MVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151 H GL+A++V G L+ L++LE + +++ + LF + M+ +V MV R N R+ G SLD+++IAA+++ DN+ I+ + +LW L AF A RM PNFW+ Sbjct: 258 HFGLVAVAVIIGQLILSGLQWLE-QALWAETIEVMAYVPLFPLAMIGGIVVQMVIDRFDRNDIVDERSVERIQGLSLDVLIIAAMATLSLQAIA--DNILTFAILAISGILWCLFAFLFLAPRMMPNFWF 384
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|1207676452|ref|WP_088036822.1| (sodium:glutamate symporter [Bacillus sp. CCTCCAB-2014251]) HSP 1 Score: 65.0846 bits (157), Expect = 3.950e-9 Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 0 Query: 19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTV-RAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFW 150 TL H+G I LS+ G+LL L +E ++ N L + + LF + MV AV+ V + +A + +R+ G +LD+++++AI++ D L I++ L + WNL AF A +M P++W Sbjct: 244 TLTVHLGYIGLSILIGFLLLEGLIIIE-EIFWIDNIELFTHLPLFPLAMVGAVIVQVFMSKAVKHEMLDRGMVNRIQGLALDILIVSAIATLSLAVIA--DYLVPFILMALAAIGWNLFAFLVLAPKMMPDYW 373
BLAST of EWM28433.1 vs. NCBI_GenBank
Match: gi|748255002|ref|WP_039810359.1| (sodium:glutamate symporter [Nocardia otitidiscaviarum]) HSP 1 Score: 65.0846 bits (157), Expect = 4.398e-9 Identity = 41/134 (30.60%), Postives = 69/134 (51.49%), Query Frame = 0 Query: 19 TLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRF-KPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWW 151 TL H GL+A+ V G+LL ++++E ++ + + L S + LF I MV ++ + ++A RL GFSLD++VIAA+ + N+ +++ + W + AF A RM PNFW+ Sbjct: 246 TLTLHFGLLAMGVLIGWLLLTGIQWVE-SKLWADSFELFSYVPLFPIAMVGGIIVQLAIQAFDRDEIVDQQLIERLQGFSLDVLVIAALGTLSLSAIAS--NIGPFLLLAGAGLAWTVGAFIFLAPRMLPNFWF 376 The following BLAST results are available for this feature:
BLAST of EWM28433.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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