rna2246, rna2246 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2246
Unique Name	rna2246
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2315
Alignment location	CM002458.1:1249401..1251284 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100924g1.1040.mrna
Orig protein id	gnl\|cribi\|Naga_100924g1.1040
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1249401..1251284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100924g1	gene2148	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2246	rna2246-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28435.1	cds2238	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1249401..1251284+
coding sequence from alignment at CM002458.1:1249401..1251284+

mRNA sequence

>rna2246 ID=rna2246|Name=rna2246|organism=Nannochloropsis gaditana|type=mRNA|length=2315bp
CTTTCTCCCGCGTTCAATGAAAGGCTTTTAAGAAGCCGTCCAAAAATACA
TGGAAGCCTTTGTTTTGCGGTGTCTTACCCTCGCACCGCCCAGGAATGTG
GTAGCTCGTGCATGGCGAAGGGCCGGGAAGCCAAATTTTGGATTCACGTG
TGGGAACGGGAGCTTTTAGCTCGTCTTTACCTTCTCCTTCTCCCCATGGG
ATGATTAGACCGGTGATATGTCCACTACCGGTTCTTATTTTGTCTTCACA
CCCGCGCTGCATATTTCAGACACGCCACGTGCACCCGACAGGAAAGTTGT
CAAGCGTGCTCCTTTTACCCCGGGTGTTGTGGGCTGTGGGCATTGTCTCA
CATTTCCCTTGCGAGGCACATCCTACTGGCGCCCGTATGCACCGTGGCAC
CGATATTTTCCACTTCACCACACCACACCCGCTAAACACGCCCCCGCCCC
CCTCTATGTTCTGGTGAACCTGCATTTTCGTCGCGAGACATTTTGAGTGT
CATGTCTTTGCACGTGGTTGAACTTGCACCGAAATGCCAAGGAGAAGATG
TGCTGCCTCCCTCGCTTGCGGAGGCTTCTCATCCTGAGAGCACAAGCGCC
ACCACCACGACTCCTACGGACGATGGCACGGTATACACTGGCCACAGCTA
CCATAATAGCAATGGAAGCGTGCCGCTGACTCGAGGGCCGACCTCTTCGT
TGCTCCCGCCGCCGCCATTGGACCTTGAGACCCAAAGCTGTTCCTCCACC
ACAATAGGCCACCGATCCCGGGGGGCGGCCTGCCGCGACTTCCTCATCAA
TCACCGTCGTTTCGTCTTCCTTTTCTTCCTGGTCGTCCTTCTCTTGGCGC
TCGGTAGCTTTGCCCTGGCTCAATACAAGGACGAATTGTTGCAGGGGGCT
CAATACATCCAAGACCGGGCCCCTCTCTCTGCTGTGTACATGGCGCTCCT
CTTGGCGCTTTGGATCATACTGTGTTTGCCTGCCACCCTTCTTGAAGTCG
TGGCCGGGATGATATACACCTGGCCGGTGGCATTCGTGTCCCTCACGGTG
GGGAAACAGCTAGGGTGCAATCTAGGCTTCTCCATCGGGCAATGCATCAC
CACGGGTTCATTTCAGGATAATTTCTTGAGTAAACTGACCAAAGGCGAGC
AGGACGCGGTGGCCCGGGCGCGAGCATTGGAAAGGGCGTCCAGTGCGGGC
CCACGAGCGGGAGGAGAGCTGGAAATGGTAGTGGTGACGGAGGAGGAGGA
AGAGGGGGAGGAGGAGGAGGAGGAACAAACAGTGGGTGGGGAACGACAGG
TGGCACCCCAGGCGAATGGACAGGTTCCAACCCCCCACGTGGCGTCTATG
GTGGGCGGGGACGCTCGTCCCGCCCGTCCTCCCCCTCGGCCCGTGTCGTC
TTCCCTTGCCCCTCCCTCGACCCGCCGGCGCCGCAAACGTCGCAAGGGCA
CTCCCAAAGACGCGCTGCTGTGGGCCGTGAAAAAGCACCCCTGGCAAATC
TGTTTCCTCCTCCGCCTCCTTCCCGTCCCGATCGGGGCAAAAAACTACGG
GATGGCCTGCCTACCTTTCCCTGTCCTGATCTATTCCCTTTGTGTCTTGG
TTGCCGAGATGCCGTTTACGATCCTCTGGATCCACATCGGCCGGAGCTGC
CGATCCCTGCTCGAGGCGATGAACGGGCACGGGAGCGGGAAACGTCGGAG
TTACTGGCACGAGATCTTGCTTTTGGTCCTCTCCATTGTGTTGCTAGTGG
CCCTGGGGGTCCTGATGCGGCGCTACACGGCGCGGTATGCCAAGTATCTG
GAAGAAGAGCGGGAGAAGAACGAAGAAGTGGCAATGGAGGAAGAGGCCAA
GGAGGAGGACGTACGGAGGGGGGAAGGGAAGGGGGAAGGGGGGCAGTGGA
AAGGGAAAGGACAGAGGGAGGAGGCGGGGGGACACGAGGAGGAGGGAGGG
GGCTTGGCACCGAGGAGGAAGGAGTGGTTGAAGGAAGGGGGAGAGGCGTG
TAGATGCAATTTATTGCTTTCTCGAATGGTCGGGCGCGATGACGGGGGAG
GGAATTTAAGGTGATGTATATGTTAAGGTACCGTAAATCGTGAGGATGGC
GCAACGGATTCGAAGGGGTCGGGTTCAGGGGAACGGCAGCGGGAGGGAGG
GAGGGATGGGAGGGAGGGCGACATAGTCTCGCCATGAAAGGCAACCATTA
GCTGTGCGGATCGGATGTTTGTTGGTGTGTGGACGCTTTGCAAATTTCTT
TGTCCGTGTCCAGGTATGTCCGTCTGACCATCCTATATGTAACATGCACT
TGAATTGCCACCCCA

protein sequence of rna2246

>rna2246-protein ID=rna2246-protein|Name=rna2246|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MASTASATGGELPITDQTSKEETLREMGEWAARYEMIAAMGYLSALLMVG
KALHNLGKLAKFRFTPPSAVISGFLGLALYDMMGAGSKLLQVELESTLRS
IEVNIVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALI
WGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLLPSRVKFKE

mRNA from alignment at CM002458.1:1249401..1251284+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2246 ID=rna2246|Name=rna2246|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp|location=Sequence derived from alignment at CM002458.1:1249401..1251284+ (Nannochloropsis gaditana)
GTTGGACAGGATTCTTCCTGCAACTCGGAAGGTGATTCAATGCCGTGGTA
ACCAAACACTTTGAAATTGGAAAGGTCATTGACATTCATCGTAACAGAGA
GCTGAGGAAGCAGGCGAGCGTAAGAATCCTAGTCATGGCTTCGACAGCAT
CCGCCACTGGGGGTGAGCTGCCCATTACAGATCAAACATCGAAAGAGGTA
AAAAAAATGTGCACCCGACACGAGCATGATCTATTTTCTCCCGTGGGCGG
CGCTGCGTAGGGTCGTTTTGGTCCCGTTTCAAGTATTTCCCCCCACGACA
GGAGACACTCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAAATGATCG
CAGCCATGGGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTCAC
AATTTGGGGAAGCTCGCCAAGGTAATGCTAAAGGGATAGGCACGCCGGTC
AGAgagaagcgagggaagaggatgggggacAAGGGGACGGGCAGATGGGG
AAAAGGGCTCCAACGCCATTCAATCAAGGAGGTGGGACGTGGATTGGATT
TCGTGGAGGTGCTATGGGAAGGCTGCTTGTTCTCGCGCCTCGTACCATGA
GGCACCTGCGTCCTGTCCGCAtaggcccccctccttgccttccttttcct
gtcccCGTGTGGATGACAACGTGACTGCCCCGGCACGCATGCCTGCCTCC
GCGCGGGAAACCTACCTGCTCAACGTCTCTTTCAttaccctccccctccc
tcaccgttCAGTTCCGTTtcaccccgccctcggccgtTATCTCGGGGTTT
TTAGGCCTGGCCCTCTACGACATGATGGGCGCCGGCTCCAAACTCTTGCA
GGTGGAACTAGAATCGACGCTGCGTTCCATCGAAGTCAACATGTACGTCT
AGGAGGAAAAATGTgtccaagggagggaacgtgctggaagagaggggtag
GAGACCGAGGTGccaggggaggtcgagggggaggtcggggcggaggaaga
ggttgccATCTCCCAGACAGGactcgggggagggaaggaggagggcgggc
gctggCGTGTCCTGGCGTATCGGCGTCGCACCTGTTGGCGCGTCAGATCG
GTGTGGCGGAGCCTCACGAAACCTTGCTATCTTTGCCCCGCAGCGTGAAC
TTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAAGAAAAA
CAAGGtaggctccctccctttgcgcTATGCGTCACTTTCGGGCCTTGggt
cgtccttctcctcgctcgtTTCGCTTCGGGGGCTtcagctccctccctcc
ctccctcccttcctccctccctccttttctcccagATGACCTACAAGCGC
ATTTTTGGCCTGATTTTCCACGAAGGCATGCCCATGCTGCTTTACGCGCA
AGCCCTCATTTGGGGTGAGCCctggaggggacggagggagggagggaggg
agggaggaggccacgcGGCGCGCACTGAGTTGCTGGCACCCGAATCGTTT
CCAaaccgcctcttccccctttgcGGTGTTccgttcctccttcctccctt
cgccctccctctctctccccctccctccctccttcgtacGCCAGGTAACT
cggtcgtcgccctcctcgtcacggGCATCTACCGGCTGTGGAACAAGGAA
ATCTCCGCCTTTGAAGGCGGGCTTGTCACCCTCGGTACCCGTCCTcactc
ccaccctctctccctccctcctgccctcccgtACCAGCCATGACCAGACC
GCTTGAACACCCGCTCTGACCTCACTCATCAttcaacctccctccctccc
tccctccctccctcgttccctccctccccccaggcTTGGAGGCGGgccgc
gacctcctcccttcgcggGTGAAGTTCAAGGAGG

Coding sequence (CDS) from alignment at CM002458.1:1249401..1251284+

>rna2246 ID=rna2246|Name=rna2246|organism=Nannochloropsis gaditana|type=CDS|length=4165bp|location=Sequence derived from alignment at CM002458.1:1249401..1251284+ (Nannochloropsis gaditana)
ATGGCTTCGACAGCATCCGCCACTGGGGGTGAGCTGCCCATTACAGATCA
AACATCGAAAGAGGAGACACTCCGAGAGATGGGGGAATGGGCAGCGCGCT
ACGAAATGATCGCAGCCATGGGCTATTTGTCCGCGTTGTTAATGGTGGGG
AAGGCCCTTCACAATTTGGGGAAGCTCGCCAAGTTCCGTTtcaccccgcc
ctcggccgtTATCTCGGGGTTTTTAGGCCTGGCCCTCTACGACATGATGG
GCGCCGGCTCCAAACTCTTGCAGGTGGAACTAGAATCGACGCTGCGTTCC
ATCGAAGTCAACATCGTGAACTTTGTCTTCACCGCCCTCGTGCTCGGCTT
CACGAGCGGGACCAAGAAAAACAAGATGACCTACAAGCGCATTTTTGGCC
TGATTTTCCACGAAGGCATGCCCATGCTGCTTTACGCGCAAGCCCTCATT
TGGGGTAACTcggtcgtcgccctcctcgtcacggGCATCTACCGGCTGTG
GAACAAGGAAATCTCCGCCTTTGAAGGCGGGCTTGTCACCCTCGgcTTGG
AGGCGGgccgcgacctcctcccttcgcggGTGAAGTTCAAGGAGGATGGC
TTCGACAGCATCCGCCACTGGGGGTGAGCTGCCCATTACAGATCAAACAT
CGAAAGAGGAGACACTCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAA
ATGATCGCAGCCATGGGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGC
CCTTCACAATTTGGGGAAGCTCGCCAAGTTCCGTTtcaccccgccctcgg
ccgtTATCTCGGGGTTTTTAGGCCTGGCCCTCTACGACATGATGGGCGCC
GGCTCCAAACTCTTGCAGGTGGAACTAGAATCGACGCTGCGTTCCATCGA
AGTCAACATCGTGAACTTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGA
GCGGGACCAAGAAAAACAAGATGACCTACAAGCGCATTTTTGGCCTGATT
TTCCACGAAGGCATGCCCATGCTGCTTTACGCGCAAGCCCTCATTTGGGG
TAACTcggtcgtcgccctcctcgtcacggGCATCTACCGGCTGTGGAACA
AGGAAATCTCCGCCTTTGAAGGCGGGCTTGTCACCCTCGgcTTGGAGGCG
GgccgcgacctcctcccttcgcggGTGAAGTTCAAGGAGGATGGCTTCGA
CAGCATCCGCCACTGGGGGTGAGCTGCCCATTACAGATCAAACATCGAAA
GAGGAGACACTCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAAATGAT
CGCAGCCATGGGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTC
ACAATTTGGGGAAGCTCGCCAAGTTCCGTTtcaccccgccctcggccgtT
ATCTCGGGGTTTTTAGGCCTGGCCCTCTACGACATGATGGGCGCCGGCTC
CAAACTCTTGCAGGTGGAACTAGAATCGACGCTGCGTTCCATCGAAGTCA
ACATCGTGAACTTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGG
ACCAAGAAAAACAAGATGACCTACAAGCGCATTTTTGGCCTGATTTTCCA
CGAAGGCATGCCCATGCTGCTTTACGCGCAAGCCCTCATTTGGGGTAACT
cggtcgtcgccctcctcgtcacggGCATCTACCGGCTGTGGAACAAGGAA
ATCTCCGCCTTTGAAGGCGGGCTTGTCACCCTCGgcTTGGAGGCGGgccg
cgacctcctcccttcgcggGTGAAGTTCAAGGAGGATGGCTTCGACAGCA
TCCGCCACTGGGGGTGAGCTGCCCATTACAGATCAAACATCGAAAGAGGA
GACACTCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAAATGATCGCAG
CCATGGGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTCACAAT
TTGGGGAAGCTCGCCAAGTTCCGTTtcaccccgccctcggccgtTATCTC
GGGGTTTTTAGGCCTGGCCCTCTACGACATGATGGGCGCCGGCTCCAAAC
TCTTGCAGGTGGAACTAGAATCGACGCTGCGTTCCATCGAAGTCAACATC
GTGAACTTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAA
GAAAAACAAGATGACCTACAAGCGCATTTTTGGCCTGATTTTCCACGAAG
GCATGCCCATGCTGCTTTACGCGCAAGCCCTCATTTGGGGTAACTcggtc
gtcgccctcctcgtcacggGCATCTACCGGCTGTGGAACAAGGAAATCTC
CGCCTTTGAAGGCGGGCTTGTCACCCTCGgcTTGGAGGCGGgccgcgacc
tcctcccttcgcggGTGAAGTTCAAGGAGGATGGCTTCGACAGCATCCGC
CACTGGGGGTGAGCTGCCCATTACAGATCAAACATCGAAAGAGGAGACAC
TCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAAATGATCGCAGCCATG
GGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTCACAATTTGGG
GAAGCTCGCCAAGTTCCGTTtcaccccgccctcggccgtTATCTCGGGGT
TTTTAGGCCTGGCCCTCTACGACATGATGGGCGCCGGCTCCAAACTCTTG
CAGGTGGAACTAGAATCGACGCTGCGTTCCATCGAAGTCAACATCGTGAA
CTTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAAGAAAA
ACAAGATGACCTACAAGCGCATTTTTGGCCTGATTTTCCACGAAGGCATG
CCCATGCTGCTTTACGCGCAAGCCCTCATTTGGGGTAACTcggtcgtcgc
cctcctcgtcacggGCATCTACCGGCTGTGGAACAAGGAAATCTCCGCCT
TTGAAGGCGGGCTTGTCACCCTCGgcTTGGAGGCGGgccgcgacctcctc
ccttcgcggGTGAAGTTCAAGGAGGATGGCTTCGACAGCATCCGCCACTG
GGGGTGAGCTGCCCATTACAGATCAAACATCGAAAGAGGAGACACTCCGA
GAGATGGGGGAATGGGCAGCGCGCTACGAAATGATCGCAGCCATGGGCTA
TTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTCACAATTTGGGGAAGC
TCGCCAAGTTCCGTTtcaccccgccctcggccgtTATCTCGGGGTTTTTA
GGCCTGGCCCTCTACGACATGATGGGCGCCGGCTCCAAACTCTTGCAGGT
GGAACTAGAATCGACGCTGCGTTCCATCGAAGTCAACATCGTGAACTTTG
TCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAAGAAAAACAAG
ATGACCTACAAGCGCATTTTTGGCCTGATTTTCCACGAAGGCATGCCCAT
GCTGCTTTACGCGCAAGCCCTCATTTGGGGTAACTcggtcgtcgccctcc
tcgtcacggGCATCTACCGGCTGTGGAACAAGGAAATCTCCGCCTTTGAA
GGCGGGCTTGTCACCCTCGgcTTGGAGGCGGgccgcgacctcctcccttc
gcggGTGAAGTTCAAGGAGGATGGCTTCGACAGCATCCGCCACTGGGGGT
GAGCTGCCCATTACAGATCAAACATCGAAAGAGGAGACACTCCGAGAGAT
GGGGGAATGGGCAGCGCGCTACGAAATGATCGCAGCCATGGGCTATTTGT
CCGCGTTGTTAATGGTGGGGAAGGCCCTTCACAATTTGGGGAAGCTCGCC
AAGTTCCGTTtcaccccgccctcggccgtTATCTCGGGGTTTTTAGGCCT
GGCCCTCTACGACATGATGGGCGCCGGCTCCAAACTCTTGCAGGTGGAAC
TAGAATCGACGCTGCGTTCCATCGAAGTCAACATCGTGAACTTTGTCTTC
ACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAAGAAAAACAAGATGAC
CTACAAGCGCATTTTTGGCCTGATTTTCCACGAAGGCATGCCCATGCTGC
TTTACGCGCAAGCCCTCATTTGGGGTAACTcggtcgtcgccctcctcgtc
acggGCATCTACCGGCTGTGGAACAAGGAAATCTCCGCCTTTGAAGGCGG
GCTTGTCACCCTCGgcTTGGAGGCGGgccgcgacctcctcccttcgcggG
TGAAGTTCAAGGAGG

Synonyms

Publications