EWM28435.1, cds2238 (CDS) Nannochloropsis gaditana

Overview
NameEWM28435.1
Unique Namecds2238
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1249535..1249597 +
Alignment locationCM002458.1:1249702..1249821 +
Alignment locationCM002458.1:1250162..1250292 +
Alignment locationCM002458.1:1250544..1250604 +
Alignment locationCM002458.1:1250736..1250814 +
Alignment locationCM002458.1:1250995..1251084 +
Alignment locationCM002458.1:1251234..1251284 +

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Properties
Property NameValue
End range.
End range1251284
Protein idEWM28435.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100924g1.1040.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1249535..1249597 +
CM002458.1supercontigCM002458.1:1249702..1249821 +
CM002458.1supercontigCM002458.1:1250162..1250292 +
CM002458.1supercontigCM002458.1:1250544..1250604 +
CM002458.1supercontigCM002458.1:1250736..1250814 +
CM002458.1supercontigCM002458.1:1250995..1251084 +
CM002458.1supercontigCM002458.1:1251234..1251284 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28435.1 vs. NCBI_GenBank
Match: gi|585110830|gb|EWM28435.1| (hypothetical protein Naga_100924g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 397.897 bits (1021), Expect = 3.654e-140
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 
Query:    1 MASTASATGGELPITDQTSKEETLREMGEWAARYEMIAAMGYLSALLMVGKALHNLGKLAKFRFTPPSAVISGFLGLALYDMMGAGSKLLQVELESTLRSIEVNIVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLLPSRVKFKE 198
            MASTASATGGELPITDQTSKEETLREMGEWAARYEMIAAMGYLSALLMVGKALHNLGKLAKFRFTPPSAVISGFLGLALYDMMGAGSKLLQVELESTLRSIEVNIVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLLPSRVKFKE
Sbjct:    1 MASTASATGGELPITDQTSKEETLREMGEWAARYEMIAAMGYLSALLMVGKALHNLGKLAKFRFTPPSAVISGFLGLALYDMMGAGSKLLQVELESTLRSIEVNIVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLLPSRVKFKE 198
[Close]
BLAST of EWM28435.1 vs. NCBI_GenBank
Match: gi|298706590|emb|CBJ29549.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 126.716 bits (317), Expect = 2.954e-30
Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 0 
Query:   19 SKEETLREMGEWAARYEMIAAMGYLSALLMVGKAL----HNLGKLAKFRFTPPSAVISGFLGLALYDMM-GAGSKLLQVELESTLRSIEVNIVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLL 190
              +ETL   G WA RY  +A  G L+ LL  GK +    H L  L   RF  P AVISG LG  +Y +  G  S  ++  L+ +L  + V ++NF F+AL LGF S       T + +   I+HE +PML+Y+Q LIWG S VALL  G+ RL N ++S F G LVT+GLE GRD++
Sbjct:    7 DDDETL---GAWALRYRGVATFGALAVLLGTGKFVGFHWHRLAFLR--RFVVPPAVISGLLGCVVYRLFKGVMSPGVKSSLDESLSEVVVLMINFTFSALTLGFASAGTYVPRT-RAVLASIWHEALPMLVYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALVTMGLETGRDVM 177
The following BLAST results are available for this feature:
BLAST of EWM28435.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110830|gb|EWM28435.1|3.654e-140100.00hypothetical protein Naga_100924g1, partial [Nanno... [more]
gi|298706590|emb|CBJ29549.1|2.954e-3043.50conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2246rna2246Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications