rna2245, rna2245 (mRNA) Nannochloropsis gaditana

Overview
Namerna2245
Unique Namerna2245
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length560
Alignment locationCM002458.1:1246916..1249230 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100924g3.1041.mrna
Orig protein idgnl|cribi|Naga_100924g3.1041
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1246916..1249230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100924g3gene2147Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28436.1cds2237Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2245rna2245-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2245 ID=rna2245|Name=rna2245|organism=Nannochloropsis gaditana|type=mRNA|length=560bp
CCCGCTTCGCCCGCACCGCCTCCTCCTCCTTCGGAAGGCCCCCCTTCTCC
TCACGGAAGATCCCCCCAGCCTCTTCCGCCGCGCCCGCCAACTCCTCTCC
CTCTTGGGCCCCGCGGACGCCCTCCACTTGGCCCGGCGGTACCCGCGAAT
TTTCCTCAAGGACTTTGCCCGGAATCTGACGCCAAAAGGCCAATGGCTGG
CCGGGGCCCTCGGAGACCCCGTCACCCTCCCCTCCCTCCTCCGCACCTCC
CCCCAAGTCTTTTTCTACTCCTCCTCTTCCTTGCAGATCAAAGCGGCCCG
CCTCCGTCGGGCCCTCCCCCCCTCCCTCGACCTCCTCCGCATGCTCCGGA
CTTTCCCAGGCCTGGCCTGCATGGACGTGGAGAAGAACGTGCTCTTGAAG
ATCCGTTACCTCATGGCGCTTTTTCCAGGGCGGGAAGGAGGGCGGGGAGG
AGGGAGGAGGGGAAGACGAGGTGCTTCGCGTGATTGAAAGTGACCCCCGA
GTGTTGGTGCATGGATTTGGGAGGATGTCCCGCGCCGAGTACGTCGTGAG
GGAGGGAGGG
back to top

protein sequence of rna2245

>rna2245-protein ID=rna2245-protein|Name=rna2245|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSY
HNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLIN
HRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALL
LALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCIT
TGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEE
EGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSS
SLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYG
MACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRS
YWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAK
EEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEAC
RCNLLLSRMVGRDDGGGNLR
back to top

mRNA from alignment at CM002458.1:1246916..1249230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2245 ID=rna2245|Name=rna2245|organism=Nannochloropsis gaditana|type=mRNA|length=2315bp|location=Sequence derived from alignment at CM002458.1:1246916..1249230- (Nannochloropsis gaditana)
CTTTCTCCCGCGTTCAATGAAAGGCTTTTAAGAAGCCGTCCAAAAATACA
TGGAAGCCTTTGTTTTGCGGTGTCTTACCCTCGCACCGCCCAGGAATGTG
GTAGCTCGTGCATGGCGAAGGGCCGGGAAGCCAAATTTTGGATTCACGTG
TGGGAACGGGAGCTTTTAGCTCGTCTTTACCTTCTCCTTCTCCCCATGGG
ATGATTAGACCGGTGATATGTCCACTACCGGTTCTTATTTTGTCTTCACA
CCCGCGCTGCATATTTCAGACACGCCACGTGCACCCGACAGGAAAGTTGT
CAAGCGTGCTCCTTTTACCCCGGGTGTTGTGGGCTGTGGGCATTGTCTCA
CATTTCCCTTGCGAGGCACATCCTACTGGCGCCCGTATGCACCGTGGCAC
CGATATTTTCCACTTCACCACACCACACCCGCTAAACACGCCCCCGCCCC
CCTCTATGTTCTGGTGAACCTGCATTTTCGTCGCGAGACATTTTGAGTGT
CATGTCTTTGCACGTGGTTGAACTTGCACCGAAATGCCAAGGAGAAGATG
TGCTGCCTCCCTCGCTTGCGGAGGCTTCTCATCCTGAGAGCACAAGCGCC
ACCACCACGACTCCTACGGACGATGGCACGGTATACACTGGCCACAGCTA
CCATAATAGCAATGGAAGCGTGCCGCTGACTCGAGGGCCGACCTCTTCGT
TGCTCCCGCCGCCGCCATTGGACCTTGAGACCCAAAGCTGTTCCTCCACC
ACAATAGGCCACCGATCCCGGGGGGCGGCCTGCCGCGACTTCCTCATCAA
TCACCGTCGTTTCGTCTTCCTTTTCTTCCTGGTCGTCCTTCTCTTGGCGC
TCGGTAGCTTTGCCCTGGCTCAATACAAGGACGAATTGTTGCAGGGGGCT
CAATACATCCAAGACCGGGCCCCTCTCTCTGCTGTGTACATGGCGCTCCT
CTTGGCGCTTTGGATCATACTGTGTTTGCCTGCCACCCTTCTTGAAGTCG
TGGCCGGGATGATATACACCTGGCCGGTGGCATTCGTGTCCCTCACGGTG
GGGAAACAGCTAGGGTGCAATCTAGGCTTCTCCATCGGGCAATGCATCAC
CACGGGTTCATTTCAGGATAATTTCTTGAGTAAACTGACCAAAGGCGAGC
AGGACGCGGTGGCCCGGGCGCGAGCATTGGAAAGGGCGTCCAGTGCGGGC
CCACGAGCGGGAGGAGAGCTGGAAATGGTAGTGGTGACGGAGGAGGAGGA
AGAGGGGGAGGAGGAGGAGGAGGAACAAACAGTGGGTGGGGAACGACAGG
TGGCACCCCAGGCGAATGGACAGGTTCCAACCCCCCACGTGGCGTCTATG
GTGGGCGGGGACGCTCGTCCCGCCCGTCCTCCCCCTCGGCCCGTGTCGTC
TTCCCTTGCCCCTCCCTCGACCCGCCGGCGCCGCAAACGTCGCAAGGGCA
CTCCCAAAGACGCGCTGCTGTGGGCCGTGAAAAAGCACCCCTGGCAAATC
TGTTTCCTCCTCCGCCTCCTTCCCGTCCCGATCGGGGCAAAAAACTACGG
GATGGCCTGCCTACCTTTCCCTGTCCTGATCTATTCCCTTTGTGTCTTGG
TTGCCGAGATGCCGTTTACGATCCTCTGGATCCACATCGGCCGGAGCTGC
CGATCCCTGCTCGAGGCGATGAACGGGCACGGGAGCGGGAAACGTCGGAG
TTACTGGCACGAGATCTTGCTTTTGGTCCTCTCCATTGTGTTGCTAGTGG
CCCTGGGGGTCCTGATGCGGCGCTACACGGCGCGGTATGCCAAGTATCTG
GAAGAAGAGCGGGAGAAGAACGAAGAAGTGGCAATGGAGGAAGAGGCCAA
GGAGGAGGACGTACGGAGGGGGGAAGGGAAGGGGGAAGGGGGGCAGTGGA
AAGGGAAAGGACAGAGGGAGGAGGCGGGGGGACACGAGGAGGAGGGAGGG
GGCTTGGCACCGAGGAGGAAGGAGTGGTTGAAGGAAGGGGGAGAGGCGTG
TAGATGCAATTTATTGCTTTCTCGAATGGTCGGGCGCGATGACGGGGGAG
GGAATTTAAGGTGATGTATATGTTAAGGTACCGTAAATCGTGAGGATGGC
GCAACGGATTCGAAGGGGTCGGGTTCAGGGGAACGGCAGCGGGAGGGAGG
GAGGGATGGGAGGGAGGGCGACATAGTCTCGCCATGAAAGGCAACCATTA
GCTGTGCGGATCGGATGTTTGTTGGTGTGTGGACGCTTTGCAAATTTCTT
TGTCCGTGTCCAGGTATGTCCGTCTGACCATCCTATATGTAACATGCACT
TGAATTGCCACCCCA
back to top

Coding sequence (CDS) from alignment at CM002458.1:1246916..1249230-

>rna2245 ID=rna2245|Name=rna2245|organism=Nannochloropsis gaditana|type=CDS|length=1563bp|location=Sequence derived from alignment at CM002458.1:1246916..1249230- (Nannochloropsis gaditana)
ATGTCTTTGCACGTGGTTGAACTTGCACCGAAATGCCAAGGAGAAGATGT
GCTGCCTCCCTCGCTTGCGGAGGCTTCTCATCCTGAGAGCACAAGCGCCA
CCACCACGACTCCTACGGACGATGGCACGGTATACACTGGCCACAGCTAC
CATAATAGCAATGGAAGCGTGCCGCTGACTCGAGGGCCGACCTCTTCGTT
GCTCCCGCCGCCGCCATTGGACCTTGAGACCCAAAGCTGTTCCTCCACCA
CAATAGGCCACCGATCCCGGGGGGCGGCCTGCCGCGACTTCCTCATCAAT
CACCGTCGTTTCGTCTTCCTTTTCTTCCTGGTCGTCCTTCTCTTGGCGCT
CGGTAGCTTTGCCCTGGCTCAATACAAGGACGAATTGTTGCAGGGGGCTC
AATACATCCAAGACCGGGCCCCTCTCTCTGCTGTGTACATGGCGCTCCTC
TTGGCGCTTTGGATCATACTGTGTTTGCCTGCCACCCTTCTTGAAGTCGT
GGCCGGGATGATATACACCTGGCCGGTGGCATTCGTGTCCCTCACGGTGG
GGAAACAGCTAGGGTGCAATCTAGGCTTCTCCATCGGGCAATGCATCACC
ACGGGTTCATTTCAGGATAATTTCTTGAGTAAACTGACCAAAGGCGAGCA
GGACGCGGTGGCCCGGGCGCGAGCATTGGAAAGGGCGTCCAGTGCGGGCC
CACGAGCGGGAGGAGAGCTGGAAATGGTAGTGGTGACGGAGGAGGAGGAA
GAGGGGGAGGAGGAGGAGGAGGAACAAACAGTGGGTGGGGAACGACAGGT
GGCACCCCAGGCGAATGGACAGGTTCCAACCCCCCACGTGGCGTCTATGG
TGGGCGGGGACGCTCGTCCCGCCCGTCCTCCCCCTCGGCCCGTGTCGTCT
TCCCTTGCCCCTCCCTCGACCCGCCGGCGCCGCAAACGTCGCAAGGGCAC
TCCCAAAGACGCGCTGCTGTGGGCCGTGAAAAAGCACCCCTGGCAAATCT
GTTTCCTCCTCCGCCTCCTTCCCGTCCCGATCGGGGCAAAAAACTACGGG
ATGGCCTGCCTACCTTTCCCTGTCCTGATCTATTCCCTTTGTGTCTTGGT
TGCCGAGATGCCGTTTACGATCCTCTGGATCCACATCGGCCGGAGCTGCC
GATCCCTGCTCGAGGCGATGAACGGGCACGGGAGCGGGAAACGTCGGAGT
TACTGGCACGAGATCTTGCTTTTGGTCCTCTCCATTGTGTTGCTAGTGGC
CCTGGGGGTCCTGATGCGGCGCTACACGGCGCGGTATGCCAAGTATCTGG
AAGAAGAGCGGGAGAAGAACGAAGAAGTGGCAATGGAGGAAGAGGCCAAG
GAGGAGGACGTACGGAGGGGGGAAGGGAAGGGGGAAGGGGGGCAGTGGAA
AGGGAAAGGACAGAGGGAGGAGGCGGGGGGACACGAGGAGGAGGGAGGGG
GCTTGGCACCGAGGAGGAAGGAGTGGTTGAAGGAAGGGGGAGAGGCGTGT
AGATGCAATTTATTGCTTTCTCGAATGGTCGGGCGCGATGACGGGGGAGG
GAATTTAAGGTGA
back to top
Synonyms
Publications