EWM28436.1, cds2237 (CDS) Nannochloropsis gaditana

Overview
NameEWM28436.1
Unique Namecds2237
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1247167..1248729 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28436.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100924g3.1041.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1247167..1248729 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585110831|gb|EWM28436.1| (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana])

HSP 1 Score: 1060.06 bits (2740), Expect = 0.000e+0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0
Query:    1 MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR 520
            MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR
Sbjct:    1 MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR 520          
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585108346|gb|EWM26339.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 211.846 bits (538), Expect = 3.238e-58
Identity = 138/407 (33.91%), Postives = 210/407 (51.60%), Query Frame = 0
Query:   89 SRGAACRDFLINHRRF--VFLFFLVVLLLAL-GSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRS--YWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRK 490
            SR   CR      RR   + L   VVL+ A+ GS+   +Y+D++L+G+++I+  AP SAVY AL+ ALWIILCLP+T++E++ G I+++PVA ++LTVGKQLGC L F + +   + + +D                       SS  P  G E    VV   ++E                                 GGDA   R    P ++  + P ++R+R  R      A+  A++ HPW+I FLLR LP+PI  KNYGMA LP P  ++ LC  VA +PFT++W+++G S ++LLEA+NG G+  +R   +  E+ LLV+ + LL+ L  ++RRYT RYA  +E E         E        R G+GKGE        +       +++  G+ P+++
Sbjct:  152 SRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDAL-------------------GHSSHSPTRGKEPNESVVENNDQE---------------------------------GGDAPSLRHSRFPAAARPSKPMSKRKRTIR------AMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE--------RAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKR 492          
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585100983|gb|EWM20987.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 78.9518 bits (193), Expect = 3.237e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0
Query:  322 LLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAM 390
            L  A+++HPW++  LLR + +PI  KNYGMA LP P  +++LC L A +P+T+LW H G S RSL + +
Sbjct:  218 LFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVL 286          

HSP 2 Score: 76.2554 bits (186), Expect = 2.516e-11
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 0
Query:  123 AQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFL 209
            A +   L     ++Q RAPLSA+Y A    LW++LCLP+TL+E+  G I+  PV  +++ V K  GC L F +G+C+   S +   L
Sbjct:  110 ALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLL 196          
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|635367343|emb|CCI44416.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 62.003 bits (149), Expect = 6.726e-7
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0
Query:  308 RRRRKRRKGTPKDALLWAV-KKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSL------LEAMNGHGSGKRRSYWHEILLLV---LSIVLLVALGVLMRRYTARYAKYLEEEREKNE 441
            R RR    G P    L A+ ++    I FL R+   PI  KNYG++ L    +I+ +  L+  +P++ILW++ G   + L      L   + H S + +  WH  L LV    SIVLL  +GV  RRY  + ++ L++E  KNE
Sbjct:  156 RVRRYMENGHPFFLSLEALLQQRECLIVFLTRIAFFPIAIKNYGLSVLNVSWIIFFVAALLTGIPYSILWVYSGHMAQHLTSLFAPLANKSEHHSSEWK--WHFALGLVGFTSSIVLLALVGVSTRRYIVKLSQQLQDE-AKNE 296          
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|635367342|emb|CCI44415.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 62.003 bits (149), Expect = 7.272e-7
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0
Query:  308 RRRRKRRKGTPKDALLWAV-KKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSL------LEAMNGHGSGKRRSYWHEILLLV---LSIVLLVALGVLMRRYTARYAKYLEEEREKNE 441
            R RR    G P    L A+ ++    I FL R+   PI  KNYG++ L    +I+ +  L+  +P++ILW++ G   + L      L   + H S + +  WH  L LV    SIVLL  +GV  RRY  + ++ L++E  KNE
Sbjct:  173 RVRRYMENGHPFFLSLEALLQQRECLIVFLTRIAFFPIAIKNYGLSVLNVSWIIFFVAALLTGIPYSILWVYSGHMAQHLTSLFAPLANKSEHHSSEWK--WHFALGLVGFTSSIVLLALVGVSTRRYIVKLSQQLQDE-AKNE 313          
The following BLAST results are available for this feature:
BLAST of EWM28436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585110831|gb|EWM28436.1|0.000e+0100.00hypothetical protein Naga_100924g3 [Nannochloropsi... [more]
gi|585108346|gb|EWM26339.1|3.238e-5833.91SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|585100983|gb|EWM20987.1|3.237e-1247.83SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|635367343|emb|CCI44416.1|6.726e-734.03unnamed protein product [Albugo candida][more]
gi|635367342|emb|CCI44415.1|7.272e-734.03unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2245rna2245Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications