EWM28436.1, cds2237 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585110831|gb|EWM28436.1| (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana]) HSP 1 Score: 1060.06 bits (2740), Expect = 0.000e+0 Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0
Query: 1 MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR 520
MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR
Sbjct: 1 MSLHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCSSTTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRKEWLKEGGEACRCNLLLSRMVGRDDGGGNLR 520
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585108346|gb|EWM26339.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 211.846 bits (538), Expect = 3.238e-58 Identity = 138/407 (33.91%), Postives = 210/407 (51.60%), Query Frame = 0
Query: 89 SRGAACRDFLINHRRF--VFLFFLVVLLLAL-GSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASSAGPRAGGELEMVVVTEEEEEGEEEEEEQTVGGERQVAPQANGQVPTPHVASMVGGDARPARPPPRPVSSSLAPPSTRRRRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRS--YWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAPRRK 490
SR CR RR + L VVL+ A+ GS+ +Y+D++L+G+++I+ AP SAVY AL+ ALWIILCLP+T++E++ G I+++PVA ++LTVGKQLGC L F + + + + +D SS P G E VV ++E GGDA R P ++ + P ++R+R R A+ A++ HPW+I FLLR LP+PI KNYGMA LP P ++ LC VA +PFT++W+++G S ++LLEA+NG G+ +R + E+ LLV+ + LL+ L ++RRYT RYA +E E E R G+GKGE + +++ G+ P+++
Sbjct: 152 SRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRDAL-------------------GHSSHSPTRGKEPNESVVENNDQE---------------------------------GGDAPSLRHSRFPAAARPSKPMSKRKRTIR------AMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYAAVIEAEEADGVGTGAE--------RAGDGKGEEDSLTRADEGGSKRAEDDDRRGVDPKKR 492
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|585100983|gb|EWM20987.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 78.9518 bits (193), Expect = 3.237e-12 Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 322 LLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAM 390
L A+++HPW++ LLR + +PI KNYGMA LP P +++LC L A +P+T+LW H G S RSL + +
Sbjct: 218 LFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVL 286 HSP 2 Score: 76.2554 bits (186), Expect = 2.516e-11 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 0
Query: 123 AQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFL 209
A + L ++Q RAPLSA+Y A LW++LCLP+TL+E+ G I+ PV +++ V K GC L F +G+C+ S + L
Sbjct: 110 ALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLL 196
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|635367343|emb|CCI44416.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 62.003 bits (149), Expect = 6.726e-7 Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0
Query: 308 RRRRKRRKGTPKDALLWAV-KKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSL------LEAMNGHGSGKRRSYWHEILLLV---LSIVLLVALGVLMRRYTARYAKYLEEEREKNE 441
R RR G P L A+ ++ I FL R+ PI KNYG++ L +I+ + L+ +P++ILW++ G + L L + H S + + WH L LV SIVLL +GV RRY + ++ L++E KNE
Sbjct: 156 RVRRYMENGHPFFLSLEALLQQRECLIVFLTRIAFFPIAIKNYGLSVLNVSWIIFFVAALLTGIPYSILWVYSGHMAQHLTSLFAPLANKSEHHSSEWK--WHFALGLVGFTSSIVLLALVGVSTRRYIVKLSQQLQDE-AKNE 296
BLAST of EWM28436.1 vs. NCBI_GenBank
Match: gi|635367342|emb|CCI44415.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 62.003 bits (149), Expect = 7.272e-7 Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0
Query: 308 RRRRKRRKGTPKDALLWAV-KKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSL------LEAMNGHGSGKRRSYWHEILLLV---LSIVLLVALGVLMRRYTARYAKYLEEEREKNE 441
R RR G P L A+ ++ I FL R+ PI KNYG++ L +I+ + L+ +P++ILW++ G + L L + H S + + WH L LV SIVLL +GV RRY + ++ L++E KNE
Sbjct: 173 RVRRYMENGHPFFLSLEALLQQRECLIVFLTRIAFFPIAIKNYGLSVLNVSWIIFFVAALLTGIPYSILWVYSGHMAQHLTSLFAPLANKSEHHSSEWK--WHFALGLVGFTSSIVLLALVGVSTRRYIVKLSQQLQDE-AKNE 313 The following BLAST results are available for this feature:
BLAST of EWM28436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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