rna2242, rna2242 (mRNA) Nannochloropsis gaditana

Overview
Namerna2242
Unique Namerna2242
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2154
Alignment locationCM002458.1:1242651..1244208 -

Link to JBrowse

Properties
Property NameValue
Productgolgi snap receptor complex member 2
Orig transcript idgnl|cribi|Naga_100495g6.2391.mrna
Orig protein idgnl|cribi|Naga_100495g6.2391
GeneSNR20
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1242651..1244208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNR20gene2144Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2242rna2242-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28439.1cds2234Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2242 ID=rna2242|Name=rna2242|organism=Nannochloropsis gaditana|type=mRNA|length=2154bp
ATGATAGATCTCAAGAGGCAACTTCGCCGTGCTTCAATAACCACCTGTCC
CGTCCCATTGACACATTTAATAGGGCCGTACAACATGCGACGCACAGTCA
CGCCAGCAGCGTCGTCATTATCATCGTCCTCTCCAGCTTCATTGTCCTTT
TGGGGTTTTTCTAGCTACCATGGAGCTACAGCAATATTGGTTATTGCCGT
TACTGCCGCTGGGGCGGCCCTACATTACGTGTATCAACATCACGACTTAT
CACCCCAGAAACGACAATCTCGTGCATATATTGACGCTTTGCATCAAATA
GCGCGTTCTGCGGGTGCAGTTCGACAAATTTCTGCGCTGACACCAAGTGA
GGCGGAAGATGACGAGAGCCGATACGCTCGTCGTCATGCTTTTTTTACGC
ATTTTTTTACCCATGTTCTCGGCGGGGACCAAGGGCGTTACAAATTCATA
CATGTCACGGGCACAAAAGGAAAAGGTACGGTGTGCGAACTGGTACGTTG
CGGCTTGATTGCGCACGGAAAACGGGTTGGGACCTTCACCAGTCCTCACC
TACACACCGTGCGGGAGCGGATCCGTGTGAACGACGTGCTCATCTCCCGG
GCAGATTTTGTCCGCCTGTGGCACAAGGTCCACGCGGCCTTGGTACCATC
AGGGATTGATGACGCGGGCCCAGTGAGGTGCGAGGGCACGTGGGCGAATT
TTTTCGACAAAGTCCTTGGGGTGGCACTGGCTTGGTTCGTCGAGCAGCAG
GTGGAATACATCATTTTGGAGGTCGGGATCGGCGGCCGGTACGACCCCAC
AAATTTCATCGCCCACCCCATCGTCTGCGTGGTCACGAGCGTGAGCGAAG
ACCATACGGACATGTTGGGCCAGGACCTGGAGGCGATTGCGTGGCAGAAA
GCCGGGATTATGAAGGGCGGAGGGGCTTCCGTCTGCCTCACCCCCGCCGT
ACCCTACCAGGATCCGAGGGTCCTGCACGTGCTCCGGACCGAGGCGCAGA
GAGTCGGCTGTCAGCTCGAAGAGATCGCCCCTTCCTCCTCCCCTCCCTCC
TCCCCGCCCTCCCCCCCGCCTTCCGCCATGGCCTCTCCGACCTTGCGCGG
GGTACCTACGATCCGCGGCGTAGAGATCCATCCCGAGAATCATGCCCTCG
CCAAAAGCGCTTTGAAACTGCTACTCTTCACCGCCGGCAAGCGTGGATGG
AGCGGGAGGCTGGGAGAGGAGACCATCCTCCTGCGGCCGGGGTGGGAGGG
AAAGGCTCTGTGGCCAGGACGCTTTGAGCTCATCCCTCTCCCGTTGAAAA
TACGGCAGGGACGAAGGCGGGCAGGGGGCCGTAACAGGCGAGAGGAGGGG
AGGGGCCGTGGGAGGGAAGCCTTACTTATCCTGGATGGAGCGCATAACAC
GGACAGCGTCGCAAAACTTCTTGGGGAAATTCGTCGGCGTTTTTTCGGCC
GACCAGGTCCGAATTATCCCGGGCCGGGCGCTCGACGCCCTTGTGCCCTC
TGGGTGCTCTTTGGGACGGGCAAAGACAAGGATGCGCGGGGGATGTTGGA
GGTACTTCTCTCCCCTCCCTCCCTGGTGGCTTCCCCCCCCGCCTCCTCCA
TCTCCTCCTCGTCCTCCCCCTCCCTCCCACCTTCAAAGGCGACGGCCAAC
ATGGATGCCGGGGAGGGGAAAGGTTTCGACCGTTTGATACTCTGCAGCGC
CAAGCACCCTCGGGCCCGGGACGTTCAAGATCTGGTCCGAGCCTTACCTC
CTTCGGTAGCGCCGTCCTTCCGCCCCCCTCACCTGTCCCGAAGAGAGGCG
AGAAAGCGGCGGCGGGCGCTGGAAAGATCGGAGGGGATTGACGTTACCTT
AAATGCTCCTTCAGAGACGGCGAGACCGGAGCAGCAGTTGCGAGAGTTAT
TCCGGGAGCTGAGGGTCAAACCTCGGAAGAGAGGGGGAAGAGGGAGGGGG
GGTGGGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGGAGGGGG
GGAGGAAGGGAAGGAGGACGAGGACGTAGTTTTGGTGGTGTGTGGGTCCT
TTTTTGTGGTGAGTGCGGCCAGAGCCTATTTGGCGGAGCAGCATCCGGGT
ATGCTCCGGGAAACAGATTTGGCCTTCGAAGCCGATCCGCCCTTATATAC
CTGA
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protein sequence of rna2242

>rna2242-protein ID=rna2242-protein|Name=rna2242|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILH
TLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKERE
ELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSN
LLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVT
LLVLWLCWKAVS
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mRNA from alignment at CM002458.1:1242651..1244208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2242 ID=rna2242|Name=rna2242|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp|location=Sequence derived from alignment at CM002458.1:1242651..1244208- (Nannochloropsis gaditana)
ACAGCGTTCTTGTTTTTGGAATTGCCGTCTGGCATGTATATGTCGTGTGG
GAGCCCAATATTATGACACTCAGGAAACGGCAGAGGTATTGACAAATTGA
TGTGGCCTTTCGCCGCAGTGGGGCCATAGTGGGAATTTGCCTGCGCCCTT
GCTATCTATCGGACACTGCGGCCGCCCCCAAAATGCAATGCATGCGCCTA
CAAAAAGATGGACGCGAGAAAGGAGCAAGTTCGGGGTGTGAAGGAGACTA
GATTGAGTGCAGCGTTGGAATTTAGTTCATAGCCTCCTCGGGTGGTAGTG
TGGGAGGTCAAGCAGCAGCTGTCGCGCGCCCCGCCGACAAGGCAATGCAA
CATACCAAACCCGTGGAATGCATGCACCAATCCCCGCACGTCACCCACTC
GCATACAGGAGTGCGCCTGAGGTCTCCTTGGTGCATGTCAAGCCAACACT
GACCCTTATGTTTGTCGTCGGCTTCTTTTTGCGGGGAATGCCTCGTTAAG
GGGGGACATCATCACAATCGTTGTTCCTCGGACCCGCAGCATCTCACGAG
CCTTTTCCCGAGGAAGTATCGTCTATCTGGCACCATCGCTTCCCAAAGTA
TCACGCAGACTCCGATTGAATGACATCTGTGGCAGAGCTTCTCCCCAAAA
CCAAGAAGTTAGCCTTCGAATTGCAAGGCCAAGTCCGCCAGGTACGAAAT
TATGTGTGACTTCCACAATGTCTGACTTTTTTGTAAAAAGAGGCCTTCGT
TCTCGACATCCTGTATCGTTCTTTGTATCGCATCTGCTACTTTTTTCTTC
CAAGGGCGGGGTTGATGTGGCACCCCCCAAAAGCAAGAGATGCTCCCATA
GTCTTGCTCTCTCACGCCTGTGTCTCGTTCGAAACAGGTGGAGATCGGGT
ATGTGTCACCGGACAATGTCTTCATGGGCTTGGGAGAGCTGGAACGTCAA
ATCAGCATCCTGCACACGCTTGTGGCCCAGGAGCGGCCGGGGGCGAGGGA
ACAATGGCAAAGGCGGATCGGTGAACTGCACAGTGAGGCTGTCTTTTTGA
GGACCGTTCTGAACCGGTTCCTCCAGTCACGCGGGAAGGTCGCCCAGGAG
GCGAAGGAGCGGGAGGAGCTTCTGGCCCGTCGGTACGGGAAGGGGGGGGA
CCTGGAGGCTCCTGCTCGGGCCGTAGAGGAGCTTCTCGAGGAAGGCGCAA
GCTACCAGCGGAGTAGCGCCATGATGAACGATATCCTGATGTCGGGTCAA
GCCACGCTTTCCAACCTGTTGGACCAACGAAGCTCGTTGAAAAGCGCCCG
CAAAAAAGTCTTGGACGTGCTGAATTTGTTGGGGGTGAGCCATCGGATCA
CGGGGATGGCCGAGCGACGGGACACGGTAGACAAGCTGATCGTCGCGGGG
GGGATGGCGGTGACCCTGCTCGTGCTCTGGCTGTGCTGGAAAGCCGTCTC
ATAGACATGCGAGGAAACGTGGCAAATCCCGGTCGGAGACCATGGTGTCA
CGGAGGGCCCTCCCAATAGCCAAGGCGAGAAGTAATTAAGAATGTAACTC
TAGCGCTT
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Coding sequence (CDS) from alignment at CM002458.1:1242651..1244208-

>rna2242 ID=rna2242|Name=rna2242|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002458.1:1242651..1244208- (Nannochloropsis gaditana)
GTGGAGATCGGGTATGTGTCACCGGACAATGTCTTCATGGGCTTGGGAGA
GCTGGAACGTCAAATCAGCATCCTGCACACGCTTGTGGCCCAGGAGCGGC
CGGGGGCGAGGGAACAATGGCAAAGGCGGATCGGTGAACTGCACAGTGAG
GCTGTCTTTTTGAGGACCGTTCTGAACCGGTTCCTCCAGTCACGCGGGAA
GGTCGCCCAGGAGGCGAAGGAGCGGGAGGAGCTTCTGGCCCGTCGGTACG
GGAAGGGGGGGGACCTGGAGGCTCCTGCTCGGGCCGTAGAGGAGCTTCTC
GAGGAAGGCGCAAGCTACCAGCGGAGTAGCGCCATGATGAACGATATCCT
GATGTCGGGTCAAGCCACGCTTTCCAACCTGTTGGACCAACGAAGCTCGT
TGAAAAGCGCCCGCAAAAAAGTCTTGGACGTGCTGAATTTGTTGGGGGTG
AGCCATCGGATCACGGGGATGGCCGAGCGACGGGACACGGTAGACAAGCT
GATCGTCGCGGGGGGGATGGCGGTGACCCTGCTCGTGCTCTGGCTGTGCT
GGAAAGCCGTCTCATAGATGACATCTGTGGCAGAGCTTCTCCCCAAAACC
AAGAAGTTAGCCTTCGAATTGCAAGGCCAAGTCCGCCAGGTGGAGATCGG
GTATGTGTCACCGGACAATGTCTTCATGGGCTTGGGAGAGCTGGAACGTC
AAATCAGCATCCTGCACACGCTTGTGGCCCAGGAGCGGCCGGGGGCGAGG
GAACAATGGCAAAGGCGGATCGGTGAACTGCACAGTGAGGCTGTCTTTTT
GAGGACCGTTCTGAACCGGTTCCTCCAGTCACGCGGGAAGGTCGCCCAGG
AGGCGAAGGAGCGGGAGGAGCTTCTGGCCCGTCGGTACGGGAAGGGGGGG
GACCTGGAGGCTCCTGCTCGGGCCGTAGAGGAGCTTCTCGAGGAAGGCGC
AAGCTACCAGCGGAGTAGCGCCATGATGAACGATATCCTGATGTCGGGTC
AAGCCACGCTTTCCAACCTGTTGGACCAACGAAGCTCGTTGAAAAGCGCC
CGCAAAAAAGTCTTGGACGTGCTGAATTTGTTGGGGGTGAGCCATCGGAT
CACGGGGATGGCCGAGCGACGGGACACGGTAGACAAGCTGATCGTCGCGG
GGGGGATGGCGGTGACCCTGCTCGTGCTCTGGCTGTGCTGGAAAGCCGTC
TCATAGATGACATCTGTGGCAGAGCTTCTCCCCAAAACCAAGAAGTTAGC
CTTCGAATTGCAAGGCCAAGTCCGCCAG
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Synonyms
Publications