EWM28439.1, cds2234 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|585110836|gb|EWM28439.1| (golgi snap receptor complex member 2 [Nannochloropsis gaditana]) HSP 1 Score: 426.402 bits (1095), Expect = 6.554e-151 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS 212
MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS
Sbjct: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS 212
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|298711441|emb|CBJ32581.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 196.052 bits (497), Expect = 4.778e-60 Identity = 101/208 (48.56%), Postives = 143/208 (68.75%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
MTS+ EL PK ++L+F+L+ ++ VE G+ SPD+ M L E RQ+ +L +LV QERP RE W+R++ EL +E FLR L RF Q R KV QEAKEREELLARR+ P+ ++ EEG+S RS M+ D L +GQA+L++L++QRS LK+A +KVLD+ N+LG+S+ I +++RR VD+L+V GG+ VT + LW W
Sbjct: 1 MTSIVELFPKARRLSFDLRTLLQYVERGHASPDDAGMNLEEFGRQLDVLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAA-----LPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSDRRQAVDRLLVLGGIIVTSVFLWWMW 203
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|223996313|ref|XP_002287830.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976946|gb|EED95273.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 151.369 bits (381), Expect = 1.535e-42 Identity = 86/208 (41.35%), Postives = 128/208 (61.54%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
MTS+ EL PK++KLA++ + Q+ QV+ G + P +F+ L EL RQ+ ++ L +E P RE W+R+I EL +A +R N + + ++ KER+ELLARR G A +++L EE S S MMND+L SGQA+LSNL+ QR ++ +K+LD+ N +G+S+ M ERRD D +V GGM VTLLV++ +
Sbjct: 1 MTSIVELFPKSRKLAYDSRQQLSQVQNGLICPSELFLSLDELSRQLDLMENLTNKETPAQREIWKRKILELREDAQSIRNQGNHYDRMVSAGIRQRKERDELLARRRRNRG-NGGDADEMQQLSEEADSLATSHGMMNDLLSSGQASLSNLVGQRQRMRWVNRKMLDIGNKIGLSNSTMRMIERRDATDAWLVFGGMIVTLLVIYFLY 207
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|397568209|gb|EJK46017.1| (hypothetical protein THAOC_35338 [Thalassiosira oceanica]) HSP 1 Score: 151.369 bits (381), Expect = 3.723e-41 Identity = 79/208 (37.98%), Postives = 125/208 (60.10%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
MTS+ EL PK +K+ ++ + QV+ G + P N+F+ L EL RQ+ I+ +L +E P R+ W+R+I EL ++ LR + + G ++ +EREEL+ RR + A + +L EE S S MMND+L SGQ++LS+L++QR ++ ++VL++ N LG+S M ERRDT D +V GGM +TLLV++ +
Sbjct: 116 MTSIVELFPKCRKICYDARQTAAQVQNGLIDPSNLFLSLDELSRQLDIMSSLAQKETPAQRQMWERKILELREDSDGLRRQGEHYDRMVGAGMRQRREREELMMRRRKNRTTGDGVADEMAQLAEEADSLASSHGMMNDLLASGQSSLSSLVNQRQKMRWINRQVLNIGNKLGLSQSTIRMIERRDTTDAYLVFGGMIITLLVIYCLY 323
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|1072232856|gb|OEU17587.1| (hypothetical protein FRACYDRAFT_238009 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 126.331 bits (316), Expect = 9.070e-33 Identity = 69/209 (33.01%), Postives = 115/209 (55.02%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAP-ARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
MTS+ EL PK +KLA++ + Q+ QV+ G + P ++F L EL Q+ +++ LV +E P RE W+R+I E+ E V +R + + + KER+ELL RR + + R L +E S+ +S M+ ++ +G+A+L+ L+DQR + K + + + LG+S+ + ERRD D V GG T +V++ W
Sbjct: 1 MTSIVELFPKCRKLAYDSRQQLAQVQNGILHPSDLFCSLDELSNQLDMMNQLVLRETPAQREVWKRKIQEIREEQVGVRRQGEHYDKVVNTNVRHQKERDELLTRRRNRKQQYSSTEERDNLNLADEAKSWNQSQYMVTGLIANGEASLNTLVDQRRRMTGVSKFLGLIDDRLGISNSTMKVIERRDITDAYFVIGGCVFTCIVIYFTW 209
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|673049603|ref|XP_008878762.1| (hypothetical protein H310_13153 [Aphanomyces invadans] >gi|574465690|gb|ETV92726.1| hypothetical protein H310_13153 [Aphanomyces invadans]) HSP 1 Score: 122.479 bits (306), Expect = 4.201e-31 Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 0
Query: 3 SVAELLPKTKKLAFELQGQVRQVEIGYVSPD-NVFMGLGE---------LERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLAR-RYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
S A L P+ +KL FEL+ Q+ +E SP +V G E L+ + L +LV E P RE W +++ ++ E L T L R + E +ERE+L++R R+ + G+ + L +E S RSS M+N++ G AT+SNL DQRS LK +KVLD+ N LG+S + + ERR+T DK IV GG+ V LL +++C
Sbjct: 2 SCAALYPQARKLVFELKTQLNYLE---SSPSLDVLSGTTENQARENAAGLKSLVEQLDSLVYNENPSNREIWAKKVHQIREEYTLLNTTLERRCIQYSRSQIEFQEREKLMSRQRHQQQGN------DIHYLTQEHDSLHRSSRMINELNELGAATMSNLNDQRSRLKGVHRKVLDIANHLGLSGSLLRVIERRETADKWIVYGGIVVVLLFMYIC 208
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|1173943784|gb|OQR92592.1| (hypothetical protein THRCLA_08668 [Thraustotheca clavata]) HSP 1 Score: 117.087 bits (292), Expect = 4.672e-29 Identity = 84/213 (39.44%), Postives = 122/213 (57.28%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGE----LERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLN-RFLQS-RGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
M + L + +KL FEL+ Q+ +E G ++ M E L IS L +LV E G+RE W +++ +L E V L L R +QS R ++ E +ER++LL+RR GG+ + A+ L +E S RSS M++DI A+L NL DQR +K ++KVLDV N LG+S + + ERRDTVDK IV GGMA+ L +++C
Sbjct: 1 MATCGSLHMQARKLVFELKTQLGYLEQGTGGSQSLEMQARENAAALSTLISQLDSLVYNEAIGSREMWTKKVAQLREEYVLLNNTLELRCIQSSRSQI--ELQERQKLLSRR---GGNNQNSDIAL--LSQEHNSLSRSSQMVSDITDLAYASLGNLSDQRDRMKGVQRKVLDVANRLGLSSSLLRVIERRDTVDKWIVYGGMALVLGFMYIC 206
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|698792558|ref|XP_009829311.1| (hypothetical protein H257_05974 [Aphanomyces astaci] >gi|574115968|gb|ETV81453.1| hypothetical protein H257_05974 [Aphanomyces astaci]) HSP 1 Score: 115.931 bits (289), Expect = 1.209e-28 Identity = 81/219 (36.99%), Postives = 120/219 (54.79%), Query Frame = 0
Query: 3 SVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQ-----------ISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVL-NRFLQ-SRGKVAQEAKEREELLAR-RYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
S + L P+ +KL FEL+ Q+ +E SP N G E Q + L +LV E P RE W +++ ++ E + L T L R +Q SR ++ E +ER++L++R R+ G D + L +E S RSS M+N++ G AT+SNL DQRS LK +KVLDV + LG+S + + ERR+T DK IV GG+ V L +++C
Sbjct: 2 SCSALYPQARKLVFELKTQLNYLE---SSPSNSDGTGGSTESQARENAAGLKSLVDQLDSLVYNENPSNREIWAKKVHQIREEYMLLNTTLEQRCIQFSRSQI--EFQERDKLMSRQRHQNGND-------IHYLSQEHDSLHRSSRMINELNDLGAATMSNLNDQRSRLKGVHRKVLDVASHLGLSGSLLRVIERRETADKWIVYGGIFVVLGFMYIC 208
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|813157265|ref|XP_012201981.1| (hypothetical protein SPRG_07452 [Saprolegnia parasitica CBS 223.65] >gi|641533208|gb|KDO27203.1| hypothetical protein SPRG_07452 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 112.849 bits (281), Expect = 1.898e-27 Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 2 TSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFM--GLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVL-NRFLQS-RGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
T+ L P+ KL FEL+ Q+ +++G S + L I L +LV E P R+ W +++ +L + L + L R +QS R ++ E +ER++LL+RR G G + + L +E S RSS M+ND+ ATL NL DQR +K ++KVLDV N LG+S + + ERRDTVDK IV GGM L +++C
Sbjct: 5 TTCGSLYPRAGKLVFELKTQLGYLDMGASSSTEMQARETAAALRSLIDQLDSLVYSENPTGRDIWMKKVQQLREDYALLNSTLEQRCIQSSRSQI--ELQERQKLLSRR-GNGAQND-----IAMLSQEYDSLGRSSRMVNDLTDLSYATLGNLSDQRDRMKGVQRKVLDVANRLGLSSSLLRIIERRDTVDKWIVYGGMVFVLGFMYVC 206
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|219121101|ref|XP_002185781.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582630|gb|ACI65251.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 109.383 bits (272), Expect = 3.655e-26 Identity = 78/209 (37.32%), Postives = 123/209 (58.85%), Query Frame = 0
Query: 1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQE-AKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
MTS+ EL PK +KLA++ + QV QV+ G VS ++++ L EL RQ++ + LV +E P R+ W R+I EL E L + S + +ER+ELL RR +G + + V++L +E +S ++S M+ ++ GQA+L+ L++QR L+ + V D+ N LG+S + ERRD D +VAGGM VT+LV++ W
Sbjct: 1 MTSIGELFPKCRKLAYDARQQVAQVQQGVVSATDLYVLLEELSRQLNAMEELVYRETPVQRDVWNRKIAELRHECTLLHQQGTQAAHSASRYRNPYGQERDELLRRRRRRGNESD-----VQDLSQESSSLEQSQNMVFGLIDQGQASLNGLIEQRQRLRGVNRMVFDIGNRLGLSQSTMKIIERRDITDAYLVAGGMIVTILVIYFVW 204 The following BLAST results are available for this feature:
BLAST of EWM28439.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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