EWM28439.1, cds2234 (CDS) Nannochloropsis gaditana

Overview
NameEWM28439.1
Unique Namecds2234
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1243518..1243589 -
Alignment locationCM002458.1:1242755..1243321 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28439.1
Productgolgi snap receptor complex member 2
Orig transcript idgnl|cribi|Naga_100495g6.2391.mrna
GeneSNR20
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1243518..1243589 -
CM002458.1supercontigCM002458.1:1242755..1243321 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005794Golgi apparatus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005484SNAP receptor activity
Vocabulary: INTERPRO
TermDefinition
IPR027027GOSR2/Membrin/Bos1
Homology
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|585110836|gb|EWM28439.1| (golgi snap receptor complex member 2 [Nannochloropsis gaditana])

HSP 1 Score: 426.402 bits (1095), Expect = 6.554e-151
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS 212
            MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS
Sbjct:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS 212          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|298711441|emb|CBJ32581.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 196.052 bits (497), Expect = 4.778e-60
Identity = 101/208 (48.56%), Postives = 143/208 (68.75%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
            MTS+ EL PK ++L+F+L+  ++ VE G+ SPD+  M L E  RQ+ +L +LV QERP  RE W+R++ EL +E  FLR  L RF Q R KV QEAKEREELLARR+        P+  ++   EEG+S  RS  M+ D L +GQA+L++L++QRS LK+A +KVLD+ N+LG+S+ I  +++RR  VD+L+V GG+ VT + LW  W
Sbjct:    1 MTSIVELFPKARRLSFDLRTLLQYVERGHASPDDAGMNLEEFGRQLDVLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAA-----LPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSDRRQAVDRLLVLGGIIVTSVFLWWMW 203          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|223996313|ref|XP_002287830.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976946|gb|EED95273.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 151.369 bits (381), Expect = 1.535e-42
Identity = 86/208 (41.35%), Postives = 128/208 (61.54%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
            MTS+ EL PK++KLA++ + Q+ QV+ G + P  +F+ L EL RQ+ ++  L  +E P  RE W+R+I EL  +A  +R   N + +      ++ KER+ELLARR    G     A  +++L EE  S   S  MMND+L SGQA+LSNL+ QR  ++   +K+LD+ N +G+S+    M ERRD  D  +V GGM VTLLV++  +
Sbjct:    1 MTSIVELFPKSRKLAYDSRQQLSQVQNGLICPSELFLSLDELSRQLDLMENLTNKETPAQREIWKRKILELREDAQSIRNQGNHYDRMVSAGIRQRKERDELLARRRRNRG-NGGDADEMQQLSEEADSLATSHGMMNDLLSSGQASLSNLVGQRQRMRWVNRKMLDIGNKIGLSNSTMRMIERRDATDAWLVFGGMIVTLLVIYFLY 207          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|397568209|gb|EJK46017.1| (hypothetical protein THAOC_35338 [Thalassiosira oceanica])

HSP 1 Score: 151.369 bits (381), Expect = 3.723e-41
Identity = 79/208 (37.98%), Postives = 125/208 (60.10%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
            MTS+ EL PK +K+ ++ +    QV+ G + P N+F+ L EL RQ+ I+ +L  +E P  R+ W+R+I EL  ++  LR     + +  G   ++ +EREEL+ RR       +  A  + +L EE  S   S  MMND+L SGQ++LS+L++QR  ++   ++VL++ N LG+S     M ERRDT D  +V GGM +TLLV++  +
Sbjct:  116 MTSIVELFPKCRKICYDARQTAAQVQNGLIDPSNLFLSLDELSRQLDIMSSLAQKETPAQRQMWERKILELREDSDGLRRQGEHYDRMVGAGMRQRREREELMMRRRKNRTTGDGVADEMAQLAEEADSLASSHGMMNDLLASGQSSLSSLVNQRQKMRWINRQVLNIGNKLGLSQSTIRMIERRDTTDAYLVFGGMIITLLVIYCLY 323          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|1072232856|gb|OEU17587.1| (hypothetical protein FRACYDRAFT_238009 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 126.331 bits (316), Expect = 9.070e-33
Identity = 69/209 (33.01%), Postives = 115/209 (55.02%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAP-ARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
            MTS+ EL PK +KLA++ + Q+ QV+ G + P ++F  L EL  Q+ +++ LV +E P  RE W+R+I E+  E V +R     + +      +  KER+ELL RR  +     +   R    L +E  S+ +S  M+  ++ +G+A+L+ L+DQR  +    K +  + + LG+S+    + ERRD  D   V GG   T +V++  W
Sbjct:    1 MTSIVELFPKCRKLAYDSRQQLAQVQNGILHPSDLFCSLDELSNQLDMMNQLVLRETPAQREVWKRKIQEIREEQVGVRRQGEHYDKVVNTNVRHQKERDELLTRRRNRKQQYSSTEERDNLNLADEAKSWNQSQYMVTGLIANGEASLNTLVDQRRRMTGVSKFLGLIDDRLGISNSTMKVIERRDITDAYFVIGGCVFTCIVIYFTW 209          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|673049603|ref|XP_008878762.1| (hypothetical protein H310_13153 [Aphanomyces invadans] >gi|574465690|gb|ETV92726.1| hypothetical protein H310_13153 [Aphanomyces invadans])

HSP 1 Score: 122.479 bits (306), Expect = 4.201e-31
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 0
Query:    3 SVAELLPKTKKLAFELQGQVRQVEIGYVSPD-NVFMGLGE---------LERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLAR-RYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
            S A L P+ +KL FEL+ Q+  +E    SP  +V  G  E         L+  +  L +LV  E P  RE W +++ ++  E   L T L R      +   E +ERE+L++R R+ + G+       +  L +E  S  RSS M+N++   G AT+SNL DQRS LK   +KVLD+ N LG+S  +  + ERR+T DK IV GG+ V LL +++C
Sbjct:    2 SCAALYPQARKLVFELKTQLNYLE---SSPSLDVLSGTTENQARENAAGLKSLVEQLDSLVYNENPSNREIWAKKVHQIREEYTLLNTTLERRCIQYSRSQIEFQEREKLMSRQRHQQQGN------DIHYLTQEHDSLHRSSRMINELNELGAATMSNLNDQRSRLKGVHRKVLDIANHLGLSGSLLRVIERRETADKWIVYGGIVVVLLFMYIC 208          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|1173943784|gb|OQR92592.1| (hypothetical protein THRCLA_08668 [Thraustotheca clavata])

HSP 1 Score: 117.087 bits (292), Expect = 4.672e-29
Identity = 84/213 (39.44%), Postives = 122/213 (57.28%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGE----LERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLN-RFLQS-RGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
            M +   L  + +KL FEL+ Q+  +E G     ++ M   E    L   IS L +LV  E  G+RE W +++ +L  E V L   L  R +QS R ++  E +ER++LL+RR   GG+ +    A+  L +E  S  RSS M++DI     A+L NL DQR  +K  ++KVLDV N LG+S  +  + ERRDTVDK IV GGMA+ L  +++C
Sbjct:    1 MATCGSLHMQARKLVFELKTQLGYLEQGTGGSQSLEMQARENAAALSTLISQLDSLVYNEAIGSREMWTKKVAQLREEYVLLNNTLELRCIQSSRSQI--ELQERQKLLSRR---GGNNQNSDIAL--LSQEHNSLSRSSQMVSDITDLAYASLGNLSDQRDRMKGVQRKVLDVANRLGLSSSLLRVIERRDTVDKWIVYGGMALVLGFMYIC 206          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|698792558|ref|XP_009829311.1| (hypothetical protein H257_05974 [Aphanomyces astaci] >gi|574115968|gb|ETV81453.1| hypothetical protein H257_05974 [Aphanomyces astaci])

HSP 1 Score: 115.931 bits (289), Expect = 1.209e-28
Identity = 81/219 (36.99%), Postives = 120/219 (54.79%), Query Frame = 0
Query:    3 SVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQ-----------ISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVL-NRFLQ-SRGKVAQEAKEREELLAR-RYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
            S + L P+ +KL FEL+ Q+  +E    SP N     G  E Q           +  L +LV  E P  RE W +++ ++  E + L T L  R +Q SR ++  E +ER++L++R R+  G D       +  L +E  S  RSS M+N++   G AT+SNL DQRS LK   +KVLDV + LG+S  +  + ERR+T DK IV GG+ V L  +++C
Sbjct:    2 SCSALYPQARKLVFELKTQLNYLE---SSPSNSDGTGGSTESQARENAAGLKSLVDQLDSLVYNENPSNREIWAKKVHQIREEYMLLNTTLEQRCIQFSRSQI--EFQERDKLMSRQRHQNGND-------IHYLSQEHDSLHRSSRMINELNDLGAATMSNLNDQRSRLKGVHRKVLDVASHLGLSGSLLRVIERRETADKWIVYGGIFVVLGFMYIC 208          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|813157265|ref|XP_012201981.1| (hypothetical protein SPRG_07452 [Saprolegnia parasitica CBS 223.65] >gi|641533208|gb|KDO27203.1| hypothetical protein SPRG_07452 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 112.849 bits (281), Expect = 1.898e-27
Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query:    2 TSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFM--GLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVL-NRFLQS-RGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLC 207
            T+   L P+  KL FEL+ Q+  +++G  S   +        L   I  L +LV  E P  R+ W +++ +L  +   L + L  R +QS R ++  E +ER++LL+RR G G   +     +  L +E  S  RSS M+ND+     ATL NL DQR  +K  ++KVLDV N LG+S  +  + ERRDTVDK IV GGM   L  +++C
Sbjct:    5 TTCGSLYPRAGKLVFELKTQLGYLDMGASSSTEMQARETAAALRSLIDQLDSLVYSENPTGRDIWMKKVQQLREDYALLNSTLEQRCIQSSRSQI--ELQERQKLLSRR-GNGAQND-----IAMLSQEYDSLGRSSRMVNDLTDLSYATLGNLSDQRDRMKGVQRKVLDVANRLGLSSSLLRIIERRDTVDKWIVYGGMVFVLGFMYVC 206          
BLAST of EWM28439.1 vs. NCBI_GenBank
Match: gi|219121101|ref|XP_002185781.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582630|gb|ACI65251.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.383 bits (272), Expect = 3.655e-26
Identity = 78/209 (37.32%), Postives = 123/209 (58.85%), Query Frame = 0
Query:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQE-AKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCW 208
            MTS+ EL PK +KLA++ + QV QV+ G VS  ++++ L EL RQ++ +  LV +E P  R+ W R+I EL  E   L     +   S  +      +ER+ELL RR  +G + +     V++L +E +S ++S  M+  ++  GQA+L+ L++QR  L+   + V D+ N LG+S     + ERRD  D  +VAGGM VT+LV++  W
Sbjct:    1 MTSIGELFPKCRKLAYDARQQVAQVQQGVVSATDLYVLLEELSRQLNAMEELVYRETPVQRDVWNRKIAELRHECTLLHQQGTQAAHSASRYRNPYGQERDELLRRRRRRGNESD-----VQDLSQESSSLEQSQNMVFGLIDQGQASLNGLIEQRQRLRGVNRMVFDIGNRLGLSQSTMKIIERRDITDAYLVAGGMIVTILVIYFVW 204          
The following BLAST results are available for this feature:
BLAST of EWM28439.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110836|gb|EWM28439.1|6.554e-151100.00golgi snap receptor complex member 2 [Nannochlorop... [more]
gi|298711441|emb|CBJ32581.1|4.778e-6048.56Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|223996313|ref|XP_002287830.1|1.535e-4241.35predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397568209|gb|EJK46017.1|3.723e-4137.98hypothetical protein THAOC_35338 [Thalassiosira oc... [more]
gi|1072232856|gb|OEU17587.1|9.070e-3333.01hypothetical protein FRACYDRAFT_238009 [Fragilario... [more]
gi|673049603|ref|XP_008878762.1|4.201e-3137.04hypothetical protein H310_13153 [Aphanomyces invad... [more]
gi|1173943784|gb|OQR92592.1|4.672e-2939.44hypothetical protein THRCLA_08668 [Thraustotheca c... [more]
gi|698792558|ref|XP_009829311.1|1.209e-2836.99hypothetical protein H257_05974 [Aphanomyces astac... [more]
gi|813157265|ref|XP_012201981.1|1.898e-2737.14hypothetical protein SPRG_07452 [Saprolegnia paras... [more]
gi|219121101|ref|XP_002185781.1|3.655e-2637.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2242rna2242Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications