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Properties
| Property Name | Value |
|---|
| Product | abc transporter family protein |
| Orig transcript id | gnl|cribi|Naga_100495g3.2390.mrna |
| Orig protein id | gnl|cribi|Naga_100495g3.2390 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1237115..1239524 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2240 ID=rna2240|Name=rna2240|organism=Nannochloropsis gaditana|type=mRNA|length=667bp
CAGCGTTCTTTACGCTACCATGTTGCCCTCTATCATGGCCCGTCGGTCCG
TCTTTCACTCCCTGGGACATTTGGCGGGCCTGCCCGTGTCATGTCGAATG
GCGTCATCGTCATTCGTCAGCCCCGCCTGCGGCAGCAGCATTCCGAACAC
GGGCAGCCAACATCGATACCCCAGCTTACTGCAAACCCGCGGCAAGCATC
GTGCTTTTGAAGCATCTTTCCTGCAGGCTCGTAAAGCCAATTATCAACCG
TTGTCACCCTTGTCTTTCCTGGAACGTACTGTCAAGCTCTACCCACGACG
GACGGCCGTTGCATACCGGTAGGTGCTCAGAAAAGAGGTAGGGCCTGAAG
CGCAACCTCGCACGGAACATTACATTCACGACACCCACATGCATACAAAG
CGACGACGTGTGGACGTGGGCGGAGGAGTATATTCGCATCAAGAAGCTGG
GAAGCAGTCTCTACAAAGCCGGCGTCCGGCCCGGCGACACGGTCTCCATC
ATGTCTCTAAACACTCCGCCTATTTTCGAGGCCCATTTTGCCGTGCCCGG
GGTGCGAGCGGTCCTCAACACACTCAACACCAGGTTGGGGAGGGGGGGAG
AGGGGAGGAAGGGAGACAGGGAGGGAGGGAGAAGAGGAGGAATAGAAGTG
GATGAGGCCTGGTTTCC back to topprotein sequence of rna2240 >rna2240-protein ID=rna2240-protein|Name=rna2240|organism=Nannochloropsis gaditana|type=polypeptide|length=713bp
MNKSDLKTPLVGSSREHVAIPVVTAHSQQGQDGKSFGNEATTNMDRIVPI
TLEVKQLNYYLGNGKHEKRILKDVNLHFKSGMLTELMGPSGAGKTTLLNL
LIGNAGGRIEGSVEVNGRALKKVANVFKKFYTFVPQDDSLLASLSTRETL
MFAARLRLPMTMPMAEKKRRVNRVLAELSLIRCADQRIGDVDRRGISGGE
RKRASIALELLVNPSVMFIDEPTSGLDSKMAEDVVRTLRRLAEQGRSLIC
TIHQPSYKIFRLFDRLVLLSLGRVVYQGKIDDVEGYFSTIGYETPRGENP
IDFYMAVMQLAPGEEPMGGGRPGGDLPTLWLEHGGDFVEEEEGGREGGLS
WFPSSASSNSLGGMMSRTGSVQSLASAEGGGEGGGEGGRKGMPTASSQAG
MDLKTLAKDVATGVPKWYQCWVLFHRAFVDSLKDTDKFLGGLILKGSIGL
LVGVVWLRQGESAEQKSIFPLTGALFIATTSSVLDTLFACILTFPSMKTL
LLREYKNGSYSLLPFYVATLANAILFNGGYAIFLGTPIYFLVGDVSNARL
LGQPFDAARYFLFLALLAVLATIGAALGLAVGALVKDIQQGQQAVMPTVI
PLLLFSGYLIPFKQIPSYFKWLYHCSPFAYAMTALQAVLFRDVVFDDCGP
PPCPNVCYGDRKLCFSTGREYLASVNSDPDNIGWSFGMLGVTFAVLFLAG
YACMSVLVRKKTN back to topmRNA from alignment at CM002458.1:1237115..1239524+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2240 ID=rna2240|Name=rna2240|organism=Nannochloropsis gaditana|type=mRNA|length=2410bp|location=Sequence derived from alignment at CM002458.1:1237115..1239524+ (Nannochloropsis gaditana)
ATGAACAAAAGTGATCTCAAAACACCCTTAGTCGGCTCCTCTAGAGAGCA
CGTGGCTATCCCGGTGGTGACGGCCCACTCCCAGCAAGGACAGGATGGCA
AATCTTTCGGGAACGAGGCCACAACAAACATGGACCGCATCGTGCCAATT
ACATTGGAAGTTAAACAGCTCAATTACTATCTTGGCAATGGCAAACATGA
AAAGCGCATACTGAAGGATGTCAATTTGCATTTTAAATCAGGCATGCTCA
CTGAATTGATGGGGCCCTCTGGGGCAGGTAAGACGACCCTTCTCAATTTA
TTGATCGGCAACGCCGGGGGACGCATCGAGGGGAGTGTGGAGGTGAATGG
CCGAGCCCTGAAAAAGGTGGCCAATGTGTTCAAGAAATTCTACACCTTCG
TCCCGCAGGACGattccctcctggcctctcTGAGCACCCGGGAGACTCTG
ATGTTCGCGGCCCGCCTGCGCTTGCCCATGACCATGCCCATGGCCGAAAA
AAAGCGACGGGTCAACCGCGTGCTTGCCGAGCTGAGCCTGATTCGCTGTG
CGGACCAGCGCATCGGGGACGTGGACCGGCGTGGAATTTCGGGGGGGGAA
CGCAAACGGGCGAGCATTGCGCTGGAGCTGTTAGTGAACCCTTCCGTGAT
GTTCATCGACGAGCCCACCTCGGGGTTGGACAGTAagatggcggaggacg
tggtccgGACCCTCCGGCGCCTGGCCGAGCAGGGTCGGTCGTTGATCTGC
ACGATCCATCAACCCTCCTACAAGATCTTCCGCCTCTTCGACCGGCTCGT
GCTCTTGAGCCTCGGCCGTGTGGTCTACCAGGGAAAGATCGACGACGTGG
AAGGCTACTTCTCCACAATTGGCTACGAGACGCCCCGCGGCGAGAACCCC
ATCGACTTTTACATGGCGGTGATGCAATTGGCCCCGGGAGAAGAGCCgat
gggcggggggcgaCCGGGGGGGGATCTCCCAACCTTGTGGCTCGAGCATG
GGGGGGActttgtggaggaggaggagggagggagggagggagggctgagC
TGGTTCCCGAGCAGTGCGAGCAGCAACAGTCTTGGGGGCATGATGAGCCG
GACAGGAAGCGTACAGTCTCTGGCGAGCGccgagggtggaggggagggcg
ggggggagggcgggcggaaagGTATGCCCACGGCTTCGTCGCAGGCAGGG
ATGGACCTGAAGACGTTGGCCAAGGATGTGGCGACGGGCGTGCCCAAGTG
GTACCAGTGCtgggtccttttccatcgaGCCTTTGTGGACAGCTTGAAAG
ACACGGACAAGTTCTTGGGCGGCTTGATTTTGAAGGGATCGATCGGTTTG
CTCGTGGGGGTGGTCTGGCTTcggcagggggagagcgcCGAGCAGAAGTC
CATTTTTCCCTTGACGGGGGCGCTATtcatcgccaccacctcttcgGTGT
TGGACACCCTCTTTGCAtgcatcctcaccttcccctccatgaagacactc
ctcctccgggaATACAAGAACGGGTCgtactccctcctccccttctacgT
GGCCACGCTGGCCAacgccatcctcttcaacgGTGGCTACGCAATTTTCT
TGGGCACGCCCATATATTTCCTGGTGGGTGACGTGAGCAATGCCCGCCTC
TTAGGCCAACCGTTTGACGCCGCCAGgtacttcctcttcctcgccctcct
tgctgtcTTGGCCACCATTGGCGCGGCGCTGGGGCTGGCGGTGGGCGCCT
TGGTCAAAGACATTCAACAGGGGCAGCAGGCCGTCATGCCCACAGTCAtt
cccctgctccttttCAGCGGCTACCTGATTCCGTTCAAACAAAGTAAGTG
CACCCAGTCGGTCCGCACCCTTTCAAAATGCTACCCGGAAGGGGCGTTTG
GCCACATCCGGTGCGGGAATTGTCGAATGAAAGCCTAGAGGCTTGTCTCG
TGCTATTAAATGGGATGCTCACCCTCATCCATGCACAGTATTTAACCGTG
CCCTCCTTgcgtctccctctcgccgtccctccctctgtctccttccgTGT
TACAACCGGGGATCTCCTCTACTCGCGTGCccactttctttttccttccc
ctcctccctagTCCCTTCCTACTTCAAATGGTTGTATCATTGCTCCCCAT
TTGCCTACGCCATGACGGCGCTACAAGCCGTCCTTTTTCGGGACGTGGTC
TTCGACGATTGCGGCCCCCCACCCTGCCCAAATGTCTGCTATGGCGACCG
CAAACTGTGCTTCTCCACGGGTAGAGAGTACTTGGCATCGGTCAATTCAG
ATCCGGACAACATAGGCTGGTCATTCGGCATGCTAGGTGTCACTTTCGCG
GTGCTTTTTCTGGCGGGTTATGCTTGTATGAGCGTGCTGGTTCGGAAAAA
GACGAATTAG back to topCoding sequence (CDS) from alignment at CM002458.1:1237115..1239524+ >rna2240 ID=rna2240|Name=rna2240|organism=Nannochloropsis gaditana|type=CDS|length=4284bp|location=Sequence derived from alignment at CM002458.1:1237115..1239524+ (Nannochloropsis gaditana)
ATGAACAAAAGTGATCTCAAAACACCCTTAGTCGGCTCCTCTAGAGAGCA
CGTGGCTATCCCGGTGGTGACGGCCCACTCCCAGCAAGGACAGGATGGCA
AATCTTTCGGGAACGAGGCCACAACAAACATGGACCGCATCGTGCCAATT
ACATTGGAAGTTAAACAGCTCAATTACTATCTTGGCAATGGCAAACATGA
AAAGCGCATACTGAAGGATGTCAATTTGCATTTTAAATCAGGCATGCTCA
CTGAATTGATGGGGCCCTCTGGGGCAGGTAAGACGACCCTTCTCAATTTA
TTGATCGGCAACGCCGGGGGACGCATCGAGGGGAGTGTGGAGGTGAATGG
CCGAGCCCTGAAAAAGGTGGCCAATGTGTTCAAGAAATTCTACACCTTCG
TCCCGCAGGACGattccctcctggcctctcTGAGCACCCGGGAGACTCTG
ATGTTCGCGGCCCGCCTGCGCTTGCCCATGACCATGCCCATGGCCGAAAA
AAAGCGACGGGTCAACCGCGTGCTTGCCGAGCTGAGCCTGATTCGCTGTG
CGGACCAGCGCATCGGGGACGTGGACCGGCGTGGAATTTCGGGGGGGGAA
CGCAAACGGGCGAGCATTGCGCTGGAGCTGTTAGTGAACCCTTCCGTGAT
GTTCATCGACGAGCCCACCTCGGGGTTGGACAGTAagatggcggaggacg
tggtccgGACCCTCCGGCGCCTGGCCGAGCAGGGTCGGTCGTTGATCTGC
ACGATCCATCAACCCTCCTACAAGATCTTCCGCCTCTTCGACCGGCTCGT
GCTCTTGAGCCTCGGCCGTGTGGTCTACCAGGGAAAGATCGACGACGTGG
AAGGCTACTTCTCCACAATTGGCTACGAGACGCCCCGCGGCGAGAACCCC
ATCGACTTTTACATGGCGGTGATGCAATTGGCCCCGGGAGAAGAGCCgat
gggcggggggcgaCCGGGGGGGGATCTCCCAACCTTGTGGCTCGAGCATG
GGGGGGActttgtggaggaggaggagggagggagggagggagggctgagC
TGGTTCCCGAGCAGTGCGAGCAGCAACAGTCTTGGGGGCATGATGAGCCG
GACAGGAAGCGTACAGTCTCTGGCGAGCGccgagggtggaggggagggcg
ggggggagggcgggcggaaagGTATGCCCACGGCTTCGTCGCAGGCAGGG
ATGGACCTGAAGACGTTGGCCAAGGATGTGGCGACGGGCGTGCCCAAGTG
GTACCAGTGCtgggtccttttccatcgaGCCTTTGTGGACAGCTTGAAAG
ACACGGACAAGTTCTTGGGCGGCTTGATTTTGAAGGGATCGATCGGTTTG
CTCGTGGGGGTGGTCTGGCTTcggcagggggagagcgcCGAGCAGAAGTC
CATTTTTCCCTTGACGGGGGCGCTATtcatcgccaccacctcttcgGTGT
TGGACACCCTCTTTGCAtgcatcctcaccttcccctccatgaagacactc
ctcctccgggaATACAAGAACGGGTCgtactccctcctccccttctacgT
GGCCACGCTGGCCAacgccatcctcttcaacgGTGGCTACGCAATTTTCT
TGGGCACGCCCATATATTTCCTGGTGGGTGACGTGAGCAATGCCCGCCTC
TTAGGCCAACCGTTTGACGCCGCCAGgtacttcctcttcctcgccctcct
tgctgtcTTGGCCACCATTGGCGCGGCGCTGGGGCTGGCGGTGGGCGCCT
TGGTCAAAGACATTCAACAGGGGCAGCAGGCCGTCATGCCCACAGTCAtt
cccctgctccttttCAGCGGCTACCTGATTCCGTTCAAACAAATCCCTTC
CTACTTCAAATGGTTGTATCATTGCTCCCCATTTGCCTACGCCATGACGG
CGCTACAAGCCGTCCTTTTTCGGGACGTGGTCTTCGACGATTGCGGCCCC
CCACCCTGCCCAAATGTCTGCTATGGCGACCGCAAACTGTGCTTCTCCAC
GGGTAGAGAGTACTTGGCATCGGTCAATTCAGATCCGGACAACATAGGCT
GGTCATTCGGCATGCTAGGTGTCACTTTCGCGGTGCTTTTTCTGGCGGGT
TATGCTTGTATGAGCGTGCTGGTTCGGAAAAAGACGAATTAGATGAACAA
AAGTGATCTCAAAACACCCTTAGTCGGCTCCTCTAGAGAGCACGTGGCTA
TCCCGGTGGTGACGGCCCACTCCCAGCAAGGACAGGATGGCAAATCTTTC
GGGAACGAGGCCACAACAAACATGGACCGCATCGTGCCAATTACATTGGA
AGTTAAACAGCTCAATTACTATCTTGGCAATGGCAAACATGAAAAGCGCA
TACTGAAGGATGTCAATTTGCATTTTAAATCAGGCATGCTCACTGAATTG
ATGGGGCCCTCTGGGGCAGGTAAGACGACCCTTCTCAATTTATTGATCGG
CAACGCCGGGGGACGCATCGAGGGGAGTGTGGAGGTGAATGGCCGAGCCC
TGAAAAAGGTGGCCAATGTGTTCAAGAAATTCTACACCTTCGTCCCGCAG
GACGattccctcctggcctctcTGAGCACCCGGGAGACTCTGATGTTCGC
GGCCCGCCTGCGCTTGCCCATGACCATGCCCATGGCCGAAAAAAAGCGAC
GGGTCAACCGCGTGCTTGCCGAGCTGAGCCTGATTCGCTGTGCGGACCAG
CGCATCGGGGACGTGGACCGGCGTGGAATTTCGGGGGGGGAACGCAAACG
GGCGAGCATTGCGCTGGAGCTGTTAGTGAACCCTTCCGTGATGTTCATCG
ACGAGCCCACCTCGGGGTTGGACAGTAagatggcggaggacgtggtccgG
ACCCTCCGGCGCCTGGCCGAGCAGGGTCGGTCGTTGATCTGCACGATCCA
TCAACCCTCCTACAAGATCTTCCGCCTCTTCGACCGGCTCGTGCTCTTGA
GCCTCGGCCGTGTGGTCTACCAGGGAAAGATCGACGACGTGGAAGGCTAC
TTCTCCACAATTGGCTACGAGACGCCCCGCGGCGAGAACCCCATCGACTT
TTACATGGCGGTGATGCAATTGGCCCCGGGAGAAGAGCCgatgggcgggg
ggcgaCCGGGGGGGGATCTCCCAACCTTGTGGCTCGAGCATGGGGGGGAc
tttgtggaggaggaggagggagggagggagggagggctgagCTGGTTCCC
GAGCAGTGCGAGCAGCAACAGTCTTGGGGGCATGATGAGCCGGACAGGAA
GCGTACAGTCTCTGGCGAGCGccgagggtggaggggagggcgggggggag
ggcgggcggaaagGTATGCCCACGGCTTCGTCGCAGGCAGGGATGGACCT
GAAGACGTTGGCCAAGGATGTGGCGACGGGCGTGCCCAAGTGGTACCAGT
GCtgggtccttttccatcgaGCCTTTGTGGACAGCTTGAAAGACACGGAC
AAGTTCTTGGGCGGCTTGATTTTGAAGGGATCGATCGGTTTGCTCGTGGG
GGTGGTCTGGCTTcggcagggggagagcgcCGAGCAGAAGTCCATTTTTC
CCTTGACGGGGGCGCTATtcatcgccaccacctcttcgGTGTTGGACACC
CTCTTTGCAtgcatcctcaccttcccctccatgaagacactcctcctccg
ggaATACAAGAACGGGTCgtactccctcctccccttctacgTGGCCACGC
TGGCCAacgccatcctcttcaacgGTGGCTACGCAATTTTCTTGGGCACG
CCCATATATTTCCTGGTGGGTGACGTGAGCAATGCCCGCCTCTTAGGCCA
ACCGTTTGACGCCGCCAGgtacttcctcttcctcgccctccttgctgtcT
TGGCCACCATTGGCGCGGCGCTGGGGCTGGCGGTGGGCGCCTTGGTCAAA
GACATTCAACAGGGGCAGCAGGCCGTCATGCCCACAGTCAttcccctgct
ccttttCAGCGGCTACCTGATTCCGTTCAAACAAATCCCTTCCTACTTCA
AATGGTTGTATCATTGCTCCCCATTTGCCTACGCCATGACGGCGCTACAA
GCCGTCCTTTTTCGGGACGTGGTCTTCGACGATTGCGGCCCCCCACCCTG
CCCAAATGTCTGCTATGGCGACCGCAAACTGTGCTTCTCCACGGGTAGAG
AGTACTTGGCATCGGTCAATTCAGATCCGGACAACATAGGCTGGTCATTC
GGCATGCTAGGTGTCACTTTCGCGGTGCTTTTTCTGGCGGGTTATGCTTG
TATGAGCGTGCTGGTTCGGAAAAAGACGAATTAG back to top
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