rna2239, rna2239 (mRNA) Nannochloropsis gaditana

Overview
Namerna2239
Unique Namerna2239
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length625
Alignment locationCM002458.1:1235955..1236906 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100495g2.2394.mrna
Orig protein idgnl|cribi|Naga_100495g2.2394
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1235955..1236906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100495g2gene2141Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2239rna2239-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28442.1cds2231Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2239 ID=rna2239|Name=rna2239|organism=Nannochloropsis gaditana|type=mRNA|length=625bp
TCAGGTCCTCTTGACCGACACGGAGCACAGCGAGGTCATGGAAGCGGCCC
TCAATATTCTGAAAGAGGAGGGAGCCTCCCTTCCCCTGGTGGTCGACATC
GTTGACAAGCACTACCTTGGGAAAGGAAAGCGGCTGGGAGAGTGGGAATT
TGAAGCCTTCCTGCAGGAGGGGGATGAGGCTTTTGACCTAGAGGGGCCGG
AGGACGAGATGGCGGCGATCTCTCTCAGCTACACAAGTGGAACGACCGGG
GACCCGAAGGGAGTCGTCACCCACCATCGCGGCGCCTATTTGAACAGCCT
GGCGAACATAGTCAGTTGGGGCACCGGCATGCCCCTGCACACGGTCTTCC
TCCACGTTGTCCCAATGTTCCACTGCAACGGCTGGTGCTTCCCTTGGGCC
ATCACCGCCCTGGCGGGCACCCACGTCTGCACCCGCTGGGTCCGAGCTGA
CCTTCTCTACGAGGCCATGGCCAAGTACAACGTCAGTCACTTTTGCGGCG
CCCCCATCCTCATGAACCTCCTCCTCAGCGCGTCCCAGGAACACAAGCGA
GACCTGCTGGGTCGAAACATCCAGCTCATGACAGCCGGCGCCCCCCACCT
CCCTCGTTAATTCGCGCGCTTAAGG
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protein sequence of rna2239

>rna2239-protein ID=rna2239-protein|Name=rna2239|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MLPSIMARRSVFHSLGHLAGLPVSCRMASSSFVSPACGSSIPNTGSQHRY
PSLLQTRGKHRAFEASFLQARKANYQPLSPLSFLERTVKLYPRRTAVAYR
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mRNA from alignment at CM002458.1:1235955..1236906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2239 ID=rna2239|Name=rna2239|organism=Nannochloropsis gaditana|type=mRNA|length=952bp|location=Sequence derived from alignment at CM002458.1:1235955..1236906- (Nannochloropsis gaditana)
CAGCGTTCTTTACGCTACCATGTTGCCCTCTATCATGGCCCGTCGGTCCG
TCTTTCACTCCCTGGGACATTTGGCGGGCCTGCCCGTGTCATGTCGAATG
GCGTCATCGTCATTCGTCAGCCCCGCCTGCGGCAGCAGCATTCCGAACAC
GGGCAGCCAACATCGATACCCCAGCTTACTGCAAACCCGCGGCAAGCATC
GTGCTTTTGAAGCATCTTTCCTGCAGGTATGCTTTCGGTTCTGGGTTTTA
CCTTTTTCATGAGGTCGAAGGTTAGAGGTGCTCAAGCACTCGCGAAAAAA
AGCTTTAATGCATCTTCGTGCCCGTCTTTGGCCCTCTGCCGTACACGACA
TCCGCAGGCTCGTAAAGCCAATTATCAACCGTTGTCACCCTTGTCTTTCC
TGGAACGTACTGTCAAGCTCTACCCACGACGGACGGCCGTTGCATACCGG
TAGGTGCTCAGAAAAGAGGTAGGGCCTGAAGCGCAACCTCGCACGGAACA
TTACATTCACGACACCCACATGCATACAAAGCGACGACGTGTGGACGTGG
GCGGAGGAGTATATTCGCATCAAGAAGCTGGGAAGCAGTCTCTACAAAGC
CGGCGTCCGGCCCGGTAGGTAGAGGGGCCGGTCCCTTGCGATCTTCCGAA
TCGATCCGTTCATGCTTTGCGTACTGCCTTCCTCCTCCTCTTTTTCCTCC
TCCTCTCTCATCACACACCGTTGTCCATGACATGATCTTTTCCCCTTTCC
CATCGCCCGTCCTACCAGGCGACACGGTCTCCATCATGTCTCTAAACACT
CCGCCTATTTTCGAGGCCCATTTTGCCGTGCCCGGGGTGCGAGCGGTCCT
CAACACACTCAACACCAGGTTGGGGAGGGGGGGAGAGGGGAGGAAGGGAG
ACAGGGAGGGAGGGAGAAGAGGAGGAATAGAAGTGGATGAGGCCTGGTTT
CC
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Coding sequence (CDS) from alignment at CM002458.1:1235955..1236906-

>rna2239 ID=rna2239|Name=rna2239|organism=Nannochloropsis gaditana|type=CDS|length=606bp|location=Sequence derived from alignment at CM002458.1:1235955..1236906- (Nannochloropsis gaditana)
GCTCGTAAAGCCAATTATCAACCGTTGTCACCCTTGTCTTTCCTGGAACG
TACTGTCAAGCTCTACCCACGACGGACGGCCGTTGCATACCGGTAGATGT
TGCCCTCTATCATGGCCCGTCGGTCCGTCTTTCACTCCCTGGGACATTTG
GCGGGCCTGCCCGTGTCATGTCGAATGGCGTCATCGTCATTCGTCAGCCC
CGCCTGCGGCAGCAGCATTCCGAACACGGGCAGCCAACATCGATACCCCA
GCTTACTGCAAACCCGCGGCAAGCATCGTGCTTTTGAAGCATCTTTCCTG
CAGGCTCGTAAAGCCAATTATCAACCGTTGTCACCCTTGTCTTTCCTGGA
ACGTACTGTCAAGCTCTACCCACGACGGACGGCCGTTGCATACCGGTAGA
TGTTGCCCTCTATCATGGCCCGTCGGTCCGTCTTTCACTCCCTGGGACAT
TTGGCGGGCCTGCCCGTGTCATGTCGAATGGCGTCATCGTCATTCGTCAG
CCCCGCCTGCGGCAGCAGCATTCCGAACACGGGCAGCCAACATCGATACC
CCAGCTTACTGCAAACCCGCGGCAAGCATCGTGCTTTTGAAGCATCTTTC
CTGCAG
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Synonyms
Publications