rna2238, rna2238 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2238
Unique Name	rna2238
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	217
Alignment location	CM002458.1:1234252..1235374 -

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Properties


Property Name	Value
Product	amp-dependent synthetase and ligase
Orig transcript id	gnl\|cribi\|Naga_102092g1.2739.mrna
Orig protein id	gnl\|cribi\|Naga_102092g1.2739
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1234252..1235374 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102092g1	gene2140	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2238	rna2238-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28443.1	cds2230	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1234252..1235374-
coding sequence from alignment at CM002458.1:1234252..1235374-

mRNA sequence

>rna2238 ID=rna2238|Name=rna2238|organism=Nannochloropsis gaditana|type=mRNA|length=217bp
AATGATGCGGGGAAACACAGTCATGAGCGGCTACCTTAAGAACGAAGCGG
CGACGGAGGCCACCTTCCATGGTGGCTGGATGCACACGGGCGACATCGCC
GTGGCCCATAAAAACGGGCGGATCCAATTGAAGGTGAGAGAGGGAGAGGA
GAAAGGAGATGGGCAGGGAGGGGGGGAGGGAAGAAGAGGCAGGTGCCTCG
GTCATGGCCAGAGGTAG

protein sequence of rna2238

>rna2238-protein ID=rna2238-protein|Name=rna2238|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFD
LEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPL
HTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVS
HFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAPHLPR

mRNA from alignment at CM002458.1:1234252..1235374-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2238 ID=rna2238|Name=rna2238|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp|location=Sequence derived from alignment at CM002458.1:1234252..1235374- (Nannochloropsis gaditana)
TCAGGTCCTCTTGACCGACACGGAGCACAGCGAGGTCATGGAAGCGGCCC
TCAATATTCTGAAAGAGGAGGGAGCCTCCCTTCCCCTGGTGGTCGACATC
GTTGACAAGCACTACCTTGGGAAAGGAAAGCGGCTGGGAGAGGTCGGGAG
GGAGGGAGGCAGGGCAGGGGGGACGGGCGAGTCGTTGACCCCCACCTCCC
TCACCGCTGTCCCTCCCCTCCCTTCCCCTCGTCCCAGTGGGAATTTGAAG
CCTTCCTGCAGGAGGGGGATGAGGCTTTTGACCTAGAGGGGCCGGAGGAC
GAGATGGCGGCGATCTCTCTCAGCTACACAAGTGGAACGACCGGGGACCC
GAAGGTATGCCCTCTCCCTCCGTCTCGCCCTCCGTCCCGCCCTCCGTCCC
GCCCTTCACCCCAACCTCCATCCTGCCCTTCTTCACACCCTCCGTCCCAC
CCTCCATCCCGCCCCCCTAGGGAGTCGTCACCCACCATCGCGGCGCCTAT
TTGAACAGCCTGGCGAACATAGTCAGTTGGGGCACCGGCATGCCCCTGCA
CACGGTCTTCCTCCACGTTGTCCCAATGTTCCACTGCAACGGCTGGTGCT
TCCCGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCAAT
CCTTTCAGTCCATACCCGTTTGATTCATCTTTCAAAGCTGGATGTCTCCC
ACTCGTGACCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCTCCCTC
CAGTTGGGCCATCACCGCCCTGGCGGGCACCCACGTCTGCACCCGCTGGG
TCCGAGCTGACCTTCTCTACGAGGCCATGGCCAAGTACAACGTCAGTCAC
TTTTGCGGCGCCCCCATCCTCATGAACCTCCTCCTCAGCGCGTCCCAGGA
ACACAAGCGAGGTCCGGGACGTCTCTCTCCCTCCCTCCCTCCCTCCATCC
CCTTCCTCTTTTTTTTCGATCGTCCACCTGCACATTGCTTCCCTCCCCTC
CCCTTCCCCTTCTCCCTTCCTCCCTCCCCCCCCCCTCCCCTCCCTCAAGA
CCTGCTGGGTCGAAACATCCAGCTCATGACAGCCGGCGCCCCCCACCTCC
CTCGTTAATTCGCGCGCTTAAGG

Coding sequence (CDS) from alignment at CM002458.1:1234252..1235374-

>rna2238 ID=rna2238|Name=rna2238|organism=Nannochloropsis gaditana|type=CDS|length=2865bp|location=Sequence derived from alignment at CM002458.1:1234252..1235374- (Nannochloropsis gaditana)
ACCTGCTGGGTCGAAACATCCAGCTCATGACAGCCGGCGCCCCCCACCTC
CCTCGTTAATTGGGCCATCACCGCCCTGGCGGGCACCCACGTCTGCACCC
GCTGGGTCCGAGCTGACCTTCTCTACGAGGCCATGGCCAAGTACAACGTC
AGTCACTTTTGCGGCGCCCCCATCCTCATGAACCTCCTCCTCAGCGCGTC
CCAGGAACACAAGCGAGGGAGTCGTCACCCACCATCGCGGCGCCTATTTG
AACAGCCTGGCGAACATAGTCAGTTGGGGCACCGGCATGCCCCTGCACAC
GGTCTTCCTCCACGTTGTCCCAATGTTCCACTGCAACGGCTGGTGCTTCC
CTGGGAATTTGAAGCCTTCCTGCAGGAGGGGGATGAGGCTTTTGACCTAG
AGGGGCCGGAGGACGAGATGGCGGCGATCTCTCTCAGCTACACAAGTGGA
ACGACCGGGGACCCGAAGATGGAAGCGGCCCTCAATATTCTGAAAGAGGA
GGGAGCCTCCCTTCCCCTGGTGGTCGACATCGTTGACAAGCACTACCTTG
GGAAAGGAAAGCGGCTGGGAGAGACCTGCTGGGTCGAAACATCCAGCTCA
TGACAGCCGGCGCCCCCCACCTCCCTCGTTAATTGGGCCATCACCGCCCT
GGCGGGCACCCACGTCTGCACCCGCTGGGTCCGAGCTGACCTTCTCTACG
AGGCCATGGCCAAGTACAACGTCAGTCACTTTTGCGGCGCCCCCATCCTC
ATGAACCTCCTCCTCAGCGCGTCCCAGGAACACAAGCGAGGGAGTCGTCA
CCCACCATCGCGGCGCCTATTTGAACAGCCTGGCGAACATAGTCAGTTGG
GGCACCGGCATGCCCCTGCACACGGTCTTCCTCCACGTTGTCCCAATGTT
CCACTGCAACGGCTGGTGCTTCCCTGGGAATTTGAAGCCTTCCTGCAGGA
GGGGGATGAGGCTTTTGACCTAGAGGGGCCGGAGGACGAGATGGCGGCGA
TCTCTCTCAGCTACACAAGTGGAACGACCGGGGACCCGAAGATGGAAGCG
GCCCTCAATATTCTGAAAGAGGAGGGAGCCTCCCTTCCCCTGGTGGTCGA
CATCGTTGACAAGCACTACCTTGGGAAAGGAAAGCGGCTGGGAGAGACCT
GCTGGGTCGAAACATCCAGCTCATGACAGCCGGCGCCCCCCACCTCCCTC
GTTAATTGGGCCATCACCGCCCTGGCGGGCACCCACGTCTGCACCCGCTG
GGTCCGAGCTGACCTTCTCTACGAGGCCATGGCCAAGTACAACGTCAGTC
ACTTTTGCGGCGCCCCCATCCTCATGAACCTCCTCCTCAGCGCGTCCCAG
GAACACAAGCGAGGGAGTCGTCACCCACCATCGCGGCGCCTATTTGAACA
GCCTGGCGAACATAGTCAGTTGGGGCACCGGCATGCCCCTGCACACGGTC
TTCCTCCACGTTGTCCCAATGTTCCACTGCAACGGCTGGTGCTTCCCTGG
GAATTTGAAGCCTTCCTGCAGGAGGGGGATGAGGCTTTTGACCTAGAGGG
GCCGGAGGACGAGATGGCGGCGATCTCTCTCAGCTACACAAGTGGAACGA
CCGGGGACCCGAAGATGGAAGCGGCCCTCAATATTCTGAAAGAGGAGGGA
GCCTCCCTTCCCCTGGTGGTCGACATCGTTGACAAGCACTACCTTGGGAA
AGGAAAGCGGCTGGGAGAGACCTGCTGGGTCGAAACATCCAGCTCATGAC
AGCCGGCGCCCCCCACCTCCCTCGTTAATTGGGCCATCACCGCCCTGGCG
GGCACCCACGTCTGCACCCGCTGGGTCCGAGCTGACCTTCTCTACGAGGC
CATGGCCAAGTACAACGTCAGTCACTTTTGCGGCGCCCCCATCCTCATGA
ACCTCCTCCTCAGCGCGTCCCAGGAACACAAGCGAGGGAGTCGTCACCCA
CCATCGCGGCGCCTATTTGAACAGCCTGGCGAACATAGTCAGTTGGGGCA
CCGGCATGCCCCTGCACACGGTCTTCCTCCACGTTGTCCCAATGTTCCAC
TGCAACGGCTGGTGCTTCCCTGGGAATTTGAAGCCTTCCTGCAGGAGGGG
GATGAGGCTTTTGACCTAGAGGGGCCGGAGGACGAGATGGCGGCGATCTC
TCTCAGCTACACAAGTGGAACGACCGGGGACCCGAAGATGGAAGCGGCCC
TCAATATTCTGAAAGAGGAGGGAGCCTCCCTTCCCCTGGTGGTCGACATC
GTTGACAAGCACTACCTTGGGAAAGGAAAGCGGCTGGGAGAGACCTGCTG
GGTCGAAACATCCAGCTCATGACAGCCGGCGCCCCCCACCTCCCTCGTTA
ATTGGGCCATCACCGCCCTGGCGGGCACCCACGTCTGCACCCGCTGGGTC
CGAGCTGACCTTCTCTACGAGGCCATGGCCAAGTACAACGTCAGTCACTT
TTGCGGCGCCCCCATCCTCATGAACCTCCTCCTCAGCGCGTCCCAGGAAC
ACAAGCGAGGGAGTCGTCACCCACCATCGCGGCGCCTATTTGAACAGCCT
GGCGAACATAGTCAGTTGGGGCACCGGCATGCCCCTGCACACGGTCTTCC
TCCACGTTGTCCCAATGTTCCACTGCAACGGCTGGTGCTTCCCTGGGAAT
TTGAAGCCTTCCTGCAGGAGGGGGATGAGGCTTTTGACCTAGAGGGGCCG
GAGGACGAGATGGCGGCGATCTCTCTCAGCTACACAAGTGGAACGACCGG
GGACCCGAAGATGGAAGCGGCCCTCAATATTCTGAAAGAGGAGGGAGCCT
CCCTTCCCCTGGTGGTCGACATCGTTGACAAGCACTACCTTGGGAAAGGA
AAGCGGCTGGGAGAG

Synonyms

Publications