EWM28443.1, cds2230 (CDS) Nannochloropsis gaditana

Overview
NameEWM28443.1
Unique Namecds2230
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1235233..1235337 -
Alignment locationCM002458.1:1235021..1235137 -
Alignment locationCM002458.1:1234771..1234904 -
Alignment locationCM002458.1:1234464..1234621 -
Alignment locationCM002458.1:1234267..1234325 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28443.1
Productamp-dependent synthetase and ligase
Orig transcript idgnl|cribi|Naga_102092g1.2739.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1235233..1235337 -
CM002458.1supercontigCM002458.1:1235021..1235137 -
CM002458.1supercontigCM002458.1:1234771..1234904 -
CM002458.1supercontigCM002458.1:1234464..1234621 -
CM002458.1supercontigCM002458.1:1234267..1234325 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020845AMP-binding_CS
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|585110842|gb|EWM28443.1| (amp-dependent synthetase and ligase [Nannochloropsis gaditana])

HSP 1 Score: 395.971 bits (1016), Expect = 1.120e-139
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAPHLPR 190
            MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAPHLPR
Sbjct:    1 MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAPHLPR 190          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|1197215730|ref|WP_086466363.1| (acyl-CoA synthetase [Oceanibaculum sp. L54-1-50])

HSP 1 Score: 214.157 bits (544), Expect = 1.168e-63
Identity = 101/171 (59.06%), Postives = 125/171 (73.10%), Query Frame = 0
Query:   16 PLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            PLV+DI D  Y G G+RLG  ++EAF+  GD  F    PEDE  AISLSYTSGTTGDPKGVV HHRGAYLN+L N+++W   MP H  +L  +PMFHCNGWCFPW +TA AGTHVC R V A  +Y+A A + V+H CGAPI+M LL++A  E +RD   +N+++MTA AP
Sbjct:  141 PLVIDIDDPLYDGPGERLGSMDYEAFIAGGDPDFAWSLPEDEWDAISLSYTSGTTGDPKGVVYHHRGAYLNALGNVLAWN--MPRHAAYLWTLPMFHCNGWCFPWTVTAQAGTHVCLRRVEAKAIYDAFADHGVTHLCGAPIVMGLLVNAKPEDRRD-FPQNVEMMTAAAP 308          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|496230435|ref|WP_008944470.1| (acyl-CoA synthetase [Oceanibaculum indicum] >gi|407206140|gb|EKE76102.1| acyl-CoA synthetase [Oceanibaculum indicum P24])

HSP 1 Score: 209.149 bits (531), Expect = 1.246e-61
Identity = 98/171 (57.31%), Postives = 124/171 (72.51%), Query Frame = 0
Query:   16 PLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            PLV+DI D  Y G G+ LG  ++EAF+ +GD  F    P DE  AISL+YTSGTTGDPKGVV HHRGAYLN+L N+++W   MP H V+L  +PMFHCNGWCFPW +TA AGTHVC R V A  +Y+A A + V+H CGAPI+M LL++A  E +RD   + +++MTA AP
Sbjct:  141 PLVIDIDDPLYDGPGEHLGSLDYEAFIADGDPDFAWHLPADEWDAISLNYTSGTTGDPKGVVYHHRGAYLNALGNVLAWN--MPRHAVYLWTLPMFHCNGWCFPWTVTAQAGTHVCLRRVEAKAIYDAFADHGVTHLCGAPIVMGLLVNAKPEERRD-FPQQVEMMTAAAP 308          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|739154153|ref|WP_037018399.1| (acyl-CoA synthetase [Rhizobiales bacterium YIM 77505])

HSP 1 Score: 207.608 bits (527), Expect = 3.931e-61
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 0
Query:   16 PLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            PLV+D  D  + G G+RLG  E+E FL+EGD  F    P DE  AISL+YTSGTTGDPKGVV HHRGAYL ++ N+V+ G G   H V+L  +PMFHCNGWCFPW+I+ +AGTHVC R+VRA  +YEA+A++ V+H CGAPI+M+ LL+A  E KR  L   +Q  TA AP
Sbjct:  140 PLVIDYDDPEFTGPGERLGALEYEEFLEEGDPGFAWAMPHDEWDAISLNYTSGTTGDPKGVVYHHRGAYLLAIGNVVTCGMGK--HPVYLWTLPMFHCNGWCFPWSISVVAGTHVCLRYVRAKAMYEALAEHGVTHLCGAPIVMSTLLNAPAEEKRP-LPHTVQFFTAAAP 307          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|647626226|ref|WP_025899748.1| (acyl-CoA synthetase [Sneathiella glossodoripedis])

HSP 1 Score: 206.068 bits (523), Expect = 1.533e-60
Identity = 102/186 (54.84%), Postives = 130/186 (69.89%), Query Frame = 0
Query:    1 MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            +  AL++ K    S P+V+DI D    G G  LGE ++E FLQ GD  FD  GPEDE  AI+L+YTSGTTGDPKGVV HHRGAYL +  N +SW   M  H ++L  +PMFHCNGWCFPW ITA+ GTHVC R V ADL+Y+AM +YNV H CGAPI++++L++A+ E K     + I++M A AP
Sbjct:  129 VREALDLCK----SKPVVIDIDDPLGSG-GDLLGEMDYEQFLQSGDPDFDWSGPEDEWQAIALNYTSGTTGDPKGVVYHHRGAYLAATGNTLSWN--MSKHPIYLWTLPMFHCNGWCFPWTITAVGGTHVCLRKVEADLIYDAMGRYNVDHMCGAPIVLSMLINATDESKAK-ANKGIKVMVAAAP 306          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|653047700|ref|WP_027299298.1| (acyl-CoA synthetase [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 205.297 bits (521), Expect = 3.581e-60
Identity = 104/182 (57.14%), Postives = 130/182 (71.43%), Query Frame = 0
Query:    4 ALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGA 185
            AL ++K    + PLVVDI D      G  +GE ++E F+ EGD  F    P+DE  AI+L+YTSGTTG+PKGVV HHRGAYLN+L NI+ W   MP H V+L  +PMFHCNGWCFPW ITALAGTH+C R V A  +Y A+A+  V+H CGAPI+MN+LL+A  E KR+ +GR I +MTAGA
Sbjct:  132 ALTLVK----TRPLVVDI-DDALAPPGALIGECDYERFIAEGDADFAWSNPDDEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALGNILVWS--MPSHPVYLWTLPMFHCNGWCFPWTITALAGTHICLRRVEAGAIYAAIAEEKVTHLCGAPIVMNMLLNAPPEAKRE-IGRAIHMMTAGA 305          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|1113605038|gb|OJY64158.1| (acyl-CoA synthetase [Rhodospirillales bacterium 70-18])

HSP 1 Score: 204.527 bits (519), Expect = 7.273e-60
Identity = 105/186 (56.45%), Postives = 132/186 (70.97%), Query Frame = 0
Query:    1 MEAALNILKEEGASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            M+AAL ++ E G   PLV+DI D      GK +G  ++EAFL  GD  F    P DE  AI+L+YTSGTTG+PKGVV HHRGAYLN++ N+++WG  MP H V+L  +PMFHCNGWCFPW ITA+AGTHVC R V A  +  A+A + V+H CGAPI++N+LL+A      DL GR IQ+MTAGAP
Sbjct:  129 MQAALAMMPEGGR--PLVIDI-DDALAPPGKLIGAMDYEAFLAGGDPGFTWRLPPDEWGAIALNYTSGTTGNPKGVVYHHRGAYLNAMGNVLTWG--MPPHAVYLWTLPMFHCNGWCFPWTITAIAGTHVCLRRVEAAAVLAAIAAHGVTHMCGAPIVVNMLLNAPAGQWPDLQGRTIQMMTAGAP 309          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|118439077|gb|EAV45709.1| (acyl-CoA synthase [Stappia aggregata IAM 12614])

HSP 1 Score: 203.756 bits (517), Expect = 1.536e-59
Identity = 94/175 (53.71%), Postives = 125/175 (71.43%), Query Frame = 0
Query:   12 GASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
             A  P+V+D  D  +   G+RLG  ++EAFLQ GD  F    P+DE  AI+L+YTSGTTG+PKGVV HHRGAYL + AN+++    M  H V+L  +PMFHCNGWCFPW+++ +AGTHVC RWVR   ++E +A+  V+H CGAPI+M+ LL+A+ EHKRD L R ++  TA AP
Sbjct:  142 AAVTPIVIDFSDTQFPQDGERLGSLDYEAFLQSGDPEFAWSLPDDEWDAIALNYTSGTTGNPKGVVYHHRGAYLLAQANVIT--ASMAKHPVYLWTLPMFHCNGWCFPWSLSLVAGTHVCLRWVRPQTMWELIAEEGVTHLCGAPIIMSTLLNAAPEHKRD-LDREVEFFTAAAP 313          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|750134975|ref|WP_040439053.1| (acyl-CoA synthetase [Labrenzia aggregata])

HSP 1 Score: 203.756 bits (517), Expect = 1.557e-59
Identity = 94/175 (53.71%), Postives = 125/175 (71.43%), Query Frame = 0
Query:   12 GASLPLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
             A  P+V+D  D  +   G+RLG  ++EAFLQ GD  F    P+DE  AI+L+YTSGTTG+PKGVV HHRGAYL + AN+++    M  H V+L  +PMFHCNGWCFPW+++ +AGTHVC RWVR   ++E +A+  V+H CGAPI+M+ LL+A+ EHKRD L R ++  TA AP
Sbjct:  140 AAVTPIVIDFSDTQFPQDGERLGSLDYEAFLQSGDPEFAWSLPDDEWDAIALNYTSGTTGNPKGVVYHHRGAYLLAQANVIT--ASMAKHPVYLWTLPMFHCNGWCFPWSLSLVAGTHVCLRWVRPQTMWELIAEEGVTHLCGAPIIMSTLLNAAPEHKRD-LDREVEFFTAAAP 311          
BLAST of EWM28443.1 vs. NCBI_GenBank
Match: gi|821555659|ref|WP_046862671.1| (acyl-CoA synthetase [Microvirga massiliensis])

HSP 1 Score: 203.371 bits (516), Expect = 2.994e-59
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 0
Query:   16 PLVVDIVDKHYLGKGKRLGEWEFEAFLQEGDEAFDLEGPEDEMAAISLSYTSGTTGDPKGVVTHHRGAYLNSLANIVSWGTGMPLHTVFLHVVPMFHCNGWCFPWAITALAGTHVCTRWVRADLLYEAMAKYNVSHFCGAPILMNLLLSASQEHKRDLLGRNIQLMTAGAP 186
            PLV+D  D  + G G+RLGE E+EAFL EGD AF    P+DE  AI+L+YTSGTTGDPKGVV HHRGAYL ++ N+V+   GM  H V+L  +PMFHCNGWCFPW+I+ +AGTHVC R VRA  +++A+A + V+H CGAPI+M+ LL+A +  KR  L   ++  TA AP
Sbjct:  159 PLVIDYDDPEFSGPGERLGEIEYEAFLAEGDPAFAWNAPQDEWDAITLNYTSGTTGDPKGVVYHHRGAYLLAMGNVVT--CGMDKHPVYLWTLPMFHCNGWCFPWSISIVAGTHVCLRQVRAKAMFDAIADHGVTHLCGAPIVMSTLLNAPEADKRP-LPHIVKFFTAAAP 326          
The following BLAST results are available for this feature:
BLAST of EWM28443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110842|gb|EWM28443.1|1.120e-139100.00amp-dependent synthetase and ligase [Nannochlorops... [more]
gi|1197215730|ref|WP_086466363.1|1.168e-6359.06acyl-CoA synthetase [Oceanibaculum sp. L54-1-50][more]
gi|496230435|ref|WP_008944470.1|1.246e-6157.31acyl-CoA synthetase [Oceanibaculum indicum] >gi|40... [more]
gi|739154153|ref|WP_037018399.1|3.931e-6157.89acyl-CoA synthetase [Rhizobiales bacterium YIM 775... [more]
gi|647626226|ref|WP_025899748.1|1.533e-6054.84acyl-CoA synthetase [Sneathiella glossodoripedis][more]
gi|653047700|ref|WP_027299298.1|3.581e-6057.14acyl-CoA synthetase [Rhodospirillales bacterium UR... [more]
gi|1113605038|gb|OJY64158.1|7.273e-6056.45acyl-CoA synthetase [Rhodospirillales bacterium 70... [more]
gi|118439077|gb|EAV45709.1|1.536e-5953.71acyl-CoA synthase [Stappia aggregata IAM 12614][more]
gi|750134975|ref|WP_040439053.1|1.557e-5953.71acyl-CoA synthetase [Labrenzia aggregata][more]
gi|821555659|ref|WP_046862671.1|2.994e-5956.73acyl-CoA synthetase [Microvirga massiliensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2238rna2238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications