rna2237, rna2237 (mRNA) Nannochloropsis gaditana

Overview
Namerna2237
Unique Namerna2237
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1114
Alignment locationCM002458.1:1233856..1234072 -

Link to JBrowse

Properties
Property NameValue
Productacyl- synthetase
Orig transcript idgnl|cribi|Naga_104758g1.4244.mrna
Orig protein idgnl|cribi|Naga_104758g1.4244
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1233856..1234072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_104758g1gene2139Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28444.1cds2229Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2237rna2237-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2237 ID=rna2237|Name=rna2237|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp
ATGCCTCACATTTTCCCCCTCTTGTGCCATCGCCAAGTGATCCGTCGCTC
GAACGCGTCCACGGAATTCCAGCGAGACCGATCCAAGCATTTCCCACATG
CACCCGCACCGCGAATTTCCTCCTCATTTCGACGCACACGATTCCCACAA
GGCGTACCCATTGTCCTACAGGGTATGGGCAGTCCAGCCGAAAAAAGATC
AGGGGGAAGCACGTCACAGGACGTGGTGTTGAGTTCTTCCTCCTCGTCTG
GTTCACCTCTTCTGCAGTACTTTAGTAAGTCTGCTTCGGCATCTGTTCTT
CCTCCCTCTGTTCCACCCCCGCCCATTCCACCCCCCGGCCTTGGTGCCTC
TGCTTCCTCACCTCCACCATCGACTTCGCTGCCTAGTCTGCTAAAATCCA
AGAGTTTCGGATTTCTATCCAGTCCCTTCTTTGCTGCCCCTTCTGCAGCG
GGAGAGGAGAAGTGCAGCATTGGAAAGGAGGACAATGTCCGCTTAGCTGC
GACAGGGGGAGGATTCTCACCTCGGCAAATTTTAACACCACCATCTCCAT
CTTCTTTTGTCCGGCAGCAACCTCTGAGAGAGGGCAAAGGCGAACAGCTT
ATGATGCAGATGATGTTAGATATGTAATGCGTCGAAAACAAGTAGAACGC
GGGCGCCCTCTTGTCCCGCTTGCGTGTGTGCGAAAAATTTGTAAAGCACA
CACAGTAAAGGAGAATCTGGGAGAGAAGAAGCGTGAGTTTGCAATGTTTG
CGCCGCGCGCAATTGCAGCCAAGAGGACGAGGCACTCATTCCTGGCTTTT
AGAAATACTGGGTTGTCTCACAAAGAAAGGCATCACACACGACATCACAG
AGTGATTGTTGTTAAATAAATGAGGCCATTTTTGTTTCTATTCTTGCCCG
ACAATCAGAAAAAGCACAGTCGCGTTGTAAATTTGAGCCACCAGGAGGGC
CCACCTAAATTTCCACACAAGCGGAGGGAGTACATGACTACCTTGCAAAA
TAAGGCAAGTCATTTTGAAAAGTCGTTCAATTGCTTGCATAATGCATAAA
GTTTCTTTGACAACTGTGTGCGCATTGGCCCTTGCATGGAGTGCTTTGAT
AGTCGTTTCTCTGC
back to top

protein sequence of rna2237

>rna2237-protein ID=rna2237-protein|Name=rna2237|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEE
KGDGQGGGEGRRGRCLGHGQR
back to top

mRNA from alignment at CM002458.1:1233856..1234072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2237 ID=rna2237|Name=rna2237|organism=Nannochloropsis gaditana|type=mRNA|length=217bp|location=Sequence derived from alignment at CM002458.1:1233856..1234072- (Nannochloropsis gaditana)
AATGATGCGGGGAAACACAGTCATGAGCGGCTACCTTAAGAACGAAGCGG
CGACGGAGGCCACCTTCCATGGTGGCTGGATGCACACGGGCGACATCGCC
GTGGCCCATAAAAACGGGCGGATCCAATTGAAGGTGAGAGAGGGAGAGGA
GAAAGGAGATGGGCAGGGAGGGGGGGAGGGAAGAAGAGGCAGGTGCCTCG
GTCATGGCCAGAGGTAG
back to top

Coding sequence (CDS) from alignment at CM002458.1:1233856..1234072-

>rna2237 ID=rna2237|Name=rna2237|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002458.1:1233856..1234072- (Nannochloropsis gaditana)
ATGATGCGGGGAAACACAGTCATGAGCGGCTACCTTAAGAACGAAGCGGC
GACGGAGGCCACCTTCCATGGTGGCTGGATGCACACGGGCGACATCGCCG
TGGCCCATAAAAACGGGCGGATCCAATTGAAGGTGAGAGAGGGAGAGGAG
AAAGGAGATGGGCAGGGAGGGGGGGAGGGAAGAAGAGGCAGGTGCCTCGG
TCATGGCCAGAGGTAG
back to top
Synonyms
Publications