EWM28444.1, cds2229 (CDS) Nannochloropsis gaditana

Overview
NameEWM28444.1
Unique Namecds2229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1233856..1234071 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28444.1
Productacyl- synthetase
Orig transcript idgnl|cribi|Naga_104758g1.4244.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1233856..1234071 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|585110844|gb|EWM28444.1| (acyl- synthetase [Nannochloropsis gaditana])

HSP 1 Score: 143.28 bits (360), Expect = 2.078e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR 71
            MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR
Sbjct:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR 71          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|655205269|ref|WP_028627208.1| (acyl-CoA synthetase [Pseudomonas resinovorans])

HSP 1 Score: 74.3294 bits (181), Expect = 6.555e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            +MRGNTVM GYLKN++ATE  F GGW HTGD+AV H+NG IQ+  R
Sbjct:  391 LMRGNTVMMGYLKNQSATEKAFAGGWFHTGDVAVVHENGYIQITDR 436          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|495350062|ref|WP_008074788.1| (acyl-CoA synthetase [Pseudomonas sp. GM79] >gi|398233450|gb|EJN19382.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas sp. GM79])

HSP 1 Score: 73.1738 bits (178), Expect = 1.705e-13
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            ++RGNTVM GYLKNEAAT+  F GGW HTGD+AV H NG +Q+  R
Sbjct:  391 LLRGNTVMMGYLKNEAATQKAFEGGWFHTGDVAVVHPNGYMQITDR 436          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|498272896|ref|WP_010587052.1| (acyl-CoA synthetase [Schlesneria paludicola])

HSP 1 Score: 72.4034 bits (176), Expect = 2.803e-13
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            MMRGN VM GYLKN  ATE  F GGW HTGD+AV H +G I+LK R
Sbjct:  400 MMRGNIVMKGYLKNRQATEEAFRGGWFHTGDLAVTHPDGYIELKDR 445          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|654271165|ref|WP_027786319.1| (acyl-CoA synthetase [Burkholderia cepacia])

HSP 1 Score: 72.0182 bits (175), Expect = 3.613e-13
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            +MRGN VM GYLKNEAAT A F GGW HTGDIAV H +G IQ+  R
Sbjct:  393 LMRGNVVMKGYLKNEAATAAAFSGGWFHTGDIAVVHPDGYIQITDR 438          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|499901127|ref|WP_011581861.1| (acyl-CoA synthetase [Chelativorans sp. BNC1] >gi|110285861|gb|ABG63920.1| AMP-dependent synthetase and ligase [Chelativorans sp. BNC1])

HSP 1 Score: 72.0182 bits (175), Expect = 3.615e-13
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            MMRGN VM GYLKN+ ATE  F GGW HTGD+ V H +G +QLK R
Sbjct:  398 MMRGNVVMKGYLKNQKATEEAFSGGWFHTGDLGVMHPDGYVQLKDR 443          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|968309197|gb|KTS13710.1| (acyl-CoA synthetase, partial [Methylobacterium aquaticum])

HSP 1 Score: 69.3218 bits (168), Expect = 4.849e-13
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGE 49
            M RGN VM GYLKN AATEA F GGW H+GD+ V H +G IQLK R  +
Sbjct:  136 MFRGNVVMRGYLKNPAATEAAFRGGWFHSGDLGVKHPDGYIQLKDRSKD 184          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|921235570|ref|WP_053180051.1| (acyl-CoA synthetase [Pseudomonas kilonensis])

HSP 1 Score: 71.633 bits (174), Expect = 6.237e-13
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            ++RGNTVM GYLKN++AT+  F GGW HTGD+AV H NG +Q+  R
Sbjct:  391 LLRGNTVMMGYLKNQSATQKAFEGGWFHTGDVAVVHPNGYVQITDR 436          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|970005793|ref|XP_015063739.1| (PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Solanum pennellii])

HSP 1 Score: 71.633 bits (174), Expect = 6.322e-13
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            M++GNTVMSGYLKN  ATE  F GGW HTGD+AV+H +G I++K R
Sbjct:  441 MIKGNTVMSGYLKNVKATEEVFRGGWFHTGDLAVSHPDGYIEVKDR 486          
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|971517453|dbj|GAQ80736.1| (AMP-dependent synthetase and ligase family protein [Klebsormidium nitens])

HSP 1 Score: 71.2478 bits (173), Expect = 7.446e-13
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
            M+RGN VM GYLKNEAAT   F GGW HTGD+ V H++G ++LK R
Sbjct:  412 MLRGNVVMKGYLKNEAATTEAFEGGWFHTGDLGVKHEDGYVELKDR 457          
The following BLAST results are available for this feature:
BLAST of EWM28444.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110844|gb|EWM28444.1|2.078e-43100.00acyl- synthetase [Nannochloropsis gaditana][more]
gi|655205269|ref|WP_028627208.1|6.555e-1467.39acyl-CoA synthetase [Pseudomonas resinovorans][more]
gi|495350062|ref|WP_008074788.1|1.705e-1365.22acyl-CoA synthetase [Pseudomonas sp. GM79] >gi|398... [more]
gi|498272896|ref|WP_010587052.1|2.803e-1367.39acyl-CoA synthetase [Schlesneria paludicola][more]
gi|654271165|ref|WP_027786319.1|3.613e-1369.57acyl-CoA synthetase [Burkholderia cepacia][more]
gi|499901127|ref|WP_011581861.1|3.615e-1365.22acyl-CoA synthetase [Chelativorans sp. BNC1] >gi|1... [more]
gi|968309197|gb|KTS13710.1|4.849e-1363.27acyl-CoA synthetase, partial [Methylobacterium aqu... [more]
gi|921235570|ref|WP_053180051.1|6.237e-1360.87acyl-CoA synthetase [Pseudomonas kilonensis][more]
gi|970005793|ref|XP_015063739.1|6.322e-1365.22PREDICTED: probable acyl-activating enzyme 1, pero... [more]
gi|971517453|dbj|GAQ80736.1|7.446e-1363.04AMP-dependent synthetase and ligase family protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2237rna2237Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications