EWM28444.1, cds2229 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|585110844|gb|EWM28444.1| (acyl- synthetase [Nannochloropsis gaditana]) HSP 1 Score: 143.28 bits (360), Expect = 2.078e-43 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR 71
MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR
Sbjct: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGEEKGDGQGGGEGRRGRCLGHGQR 71
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|655205269|ref|WP_028627208.1| (acyl-CoA synthetase [Pseudomonas resinovorans]) HSP 1 Score: 74.3294 bits (181), Expect = 6.555e-14 Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
+MRGNTVM GYLKN++ATE F GGW HTGD+AV H+NG IQ+ R
Sbjct: 391 LMRGNTVMMGYLKNQSATEKAFAGGWFHTGDVAVVHENGYIQITDR 436
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|495350062|ref|WP_008074788.1| (acyl-CoA synthetase [Pseudomonas sp. GM79] >gi|398233450|gb|EJN19382.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas sp. GM79]) HSP 1 Score: 73.1738 bits (178), Expect = 1.705e-13 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
++RGNTVM GYLKNEAAT+ F GGW HTGD+AV H NG +Q+ R
Sbjct: 391 LLRGNTVMMGYLKNEAATQKAFEGGWFHTGDVAVVHPNGYMQITDR 436
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|498272896|ref|WP_010587052.1| (acyl-CoA synthetase [Schlesneria paludicola]) HSP 1 Score: 72.4034 bits (176), Expect = 2.803e-13 Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
MMRGN VM GYLKN ATE F GGW HTGD+AV H +G I+LK R
Sbjct: 400 MMRGNIVMKGYLKNRQATEEAFRGGWFHTGDLAVTHPDGYIELKDR 445
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|654271165|ref|WP_027786319.1| (acyl-CoA synthetase [Burkholderia cepacia]) HSP 1 Score: 72.0182 bits (175), Expect = 3.613e-13 Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
+MRGN VM GYLKNEAAT A F GGW HTGDIAV H +G IQ+ R
Sbjct: 393 LMRGNVVMKGYLKNEAATAAAFSGGWFHTGDIAVVHPDGYIQITDR 438
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|499901127|ref|WP_011581861.1| (acyl-CoA synthetase [Chelativorans sp. BNC1] >gi|110285861|gb|ABG63920.1| AMP-dependent synthetase and ligase [Chelativorans sp. BNC1]) HSP 1 Score: 72.0182 bits (175), Expect = 3.615e-13 Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
MMRGN VM GYLKN+ ATE F GGW HTGD+ V H +G +QLK R
Sbjct: 398 MMRGNVVMKGYLKNQKATEEAFSGGWFHTGDLGVMHPDGYVQLKDR 443
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|968309197|gb|KTS13710.1| (acyl-CoA synthetase, partial [Methylobacterium aquaticum]) HSP 1 Score: 69.3218 bits (168), Expect = 4.849e-13 Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVREGE 49
M RGN VM GYLKN AATEA F GGW H+GD+ V H +G IQLK R +
Sbjct: 136 MFRGNVVMRGYLKNPAATEAAFRGGWFHSGDLGVKHPDGYIQLKDRSKD 184
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|921235570|ref|WP_053180051.1| (acyl-CoA synthetase [Pseudomonas kilonensis]) HSP 1 Score: 71.633 bits (174), Expect = 6.237e-13 Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
++RGNTVM GYLKN++AT+ F GGW HTGD+AV H NG +Q+ R
Sbjct: 391 LLRGNTVMMGYLKNQSATQKAFEGGWFHTGDVAVVHPNGYVQITDR 436
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|970005793|ref|XP_015063739.1| (PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Solanum pennellii]) HSP 1 Score: 71.633 bits (174), Expect = 6.322e-13 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
M++GNTVMSGYLKN ATE F GGW HTGD+AV+H +G I++K R
Sbjct: 441 MIKGNTVMSGYLKNVKATEEVFRGGWFHTGDLAVSHPDGYIEVKDR 486
BLAST of EWM28444.1 vs. NCBI_GenBank
Match: gi|971517453|dbj|GAQ80736.1| (AMP-dependent synthetase and ligase family protein [Klebsormidium nitens]) HSP 1 Score: 71.2478 bits (173), Expect = 7.446e-13 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
Query: 1 MMRGNTVMSGYLKNEAATEATFHGGWMHTGDIAVAHKNGRIQLKVR 46
M+RGN VM GYLKNEAAT F GGW HTGD+ V H++G ++LK R
Sbjct: 412 MLRGNVVMKGYLKNEAATTEAFEGGWFHTGDLGVKHEDGYVELKDR 457 The following BLAST results are available for this feature:
BLAST of EWM28444.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|