rna2234, rna2234 (mRNA) Nannochloropsis gaditana

Overview
Namerna2234
Unique Namerna2234
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2078
Alignment locationCM002458.1:1224554..1225702 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100627g1.10708.mrna
Orig protein idgnl|cribi|Naga_100627g1.10708
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1224554..1225702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100627g1gene2136Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2234rna2234-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28447.1cds2226Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2234 ID=rna2234|Name=rna2234|organism=Nannochloropsis gaditana|type=mRNA|length=2078bp
CGGAACATCTCACAACTTGGTGAGGGCAGTCTAAGTATACAACCTCCTGT
ATCTACACGAATGAAGACGGGAGCTCTTCCGTAGTATCGTTATGAAATGT
GACACGGCTGCTGGAGTTACATCGCGTCGGGCTGGGAAAGGAGAGGTCGT
CTTTTACACGCGCCGAGGATTTAGCGGGGGATCGTTGTCCGGCGTCAGAA
AATGCTCGATGCGGGCTTCCCTTAATCTTCTCACAAATTCCCCTTTTCAA
CAAGGCACCCACGCGCCTTAATAAGGTCGACCAGTTCGCAAGTAGTGGAG
GCTTTGGCTTAATTTGACTTTGTCGATGATTTCACTCGTGACTGGCCTGC
CTCATGTGTCCACAGGCTTGTATTTCACCGGAACGACGCGTCTTGATAAG
GCATTGATAGGGACGTCATGTCCATGTCTACATCTGGGCCATCCGCGATC
GCCTCCGGCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGAT
GCTGAAGACGAACGCAGGCGTTTTGCCCCGCCCCTCTCCTTCGCTTTTCT
ATTTCCCAGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACAT
TGGGCTCGGGTGCTGGAAGAGGAATATGCGACGATTAAACAAGAATACAT
GGGCCTCAAATCCCGGCAAATCGACTCCGACTATAAACGTCAAGATGGAG
AGCACAGCTTGCACCATGGCCGATGGGACTGGCATTCCTACATATTGAAG
GGTCAAATCCAGCCTCTCTTTGCGGAACTGTGTCCAGAAACCAGCCGTCT
CCTCCAAGAATTCAACCGGCAATCGTTCTTGATGCGAGACACACCTTTTT
CCTTCTCGTTCTTCTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCAT
ACTGGACCCTCCAACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTGCC
TCAAGGAGGAAAGACGGAGGCAAACGAGGAGAAGAAGGAGGGAATGAAGG
AGGGGAGGAGGGAGGGGAGGAGGGAGGGAGAGAAGGGAGGGAGCGAGGAA
GGGAGGGAGCGAGGGAATCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAA
AGACAGCTCACAAAGCCGCCCAGATCCTGTCCCCCCAGGGTGCGCTTCTT
CTTCCGCCGAGTTCGACTCCCTCGCCACCCTGCAAGCCCGCCTTCCCTGT
GGCATCCGCATCGGAGATCAAGTCCGGGAATGGGTGGAAGGAAAGTGTCT
GGTGTTCGATGACGCTTATGAGCACGAAGTTTGGAACCTCACGGAGGAGG
AGAGGGTTTTGCTGCTGGTCGACTTTTGGCACCCGGAAATTGCCCTGGAG
GAGCGTGAGGCCATCCAAAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTG
GATGCAAGGAAATGGTGGGTGAAAGAGGAAGGGGAGGAAGGAGGGAGGAT
ATGTGTAAACAGGCGGTGGGTGCGATGAAGCATTCTGGAGGGGAAAGGAC
GCTGATGCCGGCTATCTTCCGATCCTCGATGTGTTCAACCTCTTTGGTGC
GAGAGTCGTCACGGGTATGGCGTGTGAAACGGTGACTGAGGTTGCTAAGG
CAGGGAGGGGACCAAGGATGTAGGACTGGGGAAGTAAATTGTTTATTCGA
TTAAGATGAAAGTATACTCAACGCCATGTCGATCGCTTCTTAGACAAGAC
GATACTATACTCAAAGCCATATCGATCGTTTCTTTAATAAAGGTGATAGT
TAACTCCTTGTGCTTTCGTGTCGACGACCGTTCCGCCGCCACCCCTCCGT
CCGGCCCTCCCCGTCTACTGTACCTGACGCGACCGCCTTCCCGCCCGCCT
CACCACCAAAAGCTTCCACCTCTTCCTTAGCCATTTCGCTTTCTCCCAGC
CCCTTGCCCTCCCTCCGTACCGCTGGACAGGAACGTACGCTTCTCGGCCT
TTTTCGGTCTTTGTGCAGGCGCTCTCACAGTCCCTCTTTCTCCCCACCCT
CGGTCGCCGGACCTTTCCTCTTGACACCTCCATGGTTCCTGGCGTGGCTC
TCCATCAAGGAATTCAGGAGCCGTGACG
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protein sequence of rna2234

>rna2234-protein ID=rna2234-protein|Name=rna2234|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MQLKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEW
IEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLN
SLMESHARNHGGVKRKGPATEGGEKEGL
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mRNA from alignment at CM002458.1:1224554..1225702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2234 ID=rna2234|Name=rna2234|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp|location=Sequence derived from alignment at CM002458.1:1224554..1225702- (Nannochloropsis gaditana)
CTCCCATGCAGCTGAAAGCCAACGATCCCTCCGCCCCCCGGCTCTTTGAC
GCCGTCAGGGAAGGGGATCCGCGAGCCGTGGCCACGCTCCAGCAGATGTT
CGCGGACAGATATCTGGGTGGGGTCGATCTTGATGCCTTCCAGGTCCGAG
GAGGGAAGGAGGGAGGGAGGGAGGGAGGGCACGGGTACTCCTCGGTTACG
CTCCTCTTGTGTGAAAATTGGCATCCGTGTGAATGTCGCGCTGCTCGTCG
CCTTTTCCCCCTTAAAGCCCTCCTCCTTGTTCCTACCCTTGCGGACCACG
CTGGGCACTGTCTTCCCTCCCTCCCGCCCTCCCTCCCACCCCACCGTTCT
ACGGCAAGAGTCACCCTCACAATTCTCCCTGCTCCTCCCTCCCAACCCCG
TCCTCGATCCTCCCCTCTTCGTTCCCTCCTTTTTTTTCCTCCTTTAGGAC
AATGAGTGGATCGAAAAGGCCCGCGCCAGGTTTTTCGCGAACGAGGATCT
GCTGCGTCTTGTGGACGACAACGACATCCTCGACATCCTCCGCAACCCCG
ACCTCAAGCTTCACAAGGTTCCTATTTTCTCTCTCTCCCGTGTTCCTCCC
TTCCCGCCCTTCCTTCTCATCTTCCTCCCCCCTCCCTCGTTCAAGCGCCC
GAGTTCCCCCGCCAACGCTCCCCCCGTCCCTCGCTCCTCATCCTTCCCTC
CGATCCCGCAGGCAAGTGAGATGGGCAACGCCGATCCGTCACGGCTCCTG
AATTCCTTGATGGAGAGCCACGCCAGGAACCATGGAGGTGTCAAGAGGAA
AGGTCCGGCGACCGAGGGTGGGGAGAAAGAGGGACTGTGAGAGCGCCTGC
ACAAAGACCGAAAAAGGCCGAGAAGCGTACGTTCCTGTCCAGCGGTACGG
AGGGAGGGCAAGGGGCTGGGAGAAAGCGAAATGGCTAAGGAAGAGGTGGA
AGCTTTTGGTGGTGAGGCGGGCGGGAAGGCGGTCGCGTCAGGTACAGTAG
ACGGGGAGGGCCGGACGGAGGGGTGGCGGCGGAACGGTCGTCGACACGAA
AGCACAAGGAGTTAACTATCACCTTTATTAAAGAAACGATCGATATGGCT
TTGAGTATAGTATCGTCTTGTCTAAGAAGCGATCGACATGGCGTTGAGT
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Coding sequence (CDS) from alignment at CM002458.1:1224554..1225702-

>rna2234 ID=rna2234|Name=rna2234|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at CM002458.1:1224554..1225702- (Nannochloropsis gaditana)
GCAAGTGAGATGGGCAACGCCGATCCGTCACGGCTCCTGAATTCCTTGAT
GGAGAGCCACGCCAGGAACCATGGAGGTGTCAAGAGGAAAGGTCCGGCGA
CCGAGGGTGGGGAGAAAGAGGGACTGTGAGACAATGAGTGGATCGAAAAG
GCCCGCGCCAGGTTTTTCGCGAACGAGGATCTGCTGCGTCTTGTGGACGA
CAACGACATCCTCGACATCCTCCGCAACCCCGACCTCAAGCTTCACAAGA
TGCAGCTGAAAGCCAACGATCCCTCCGCCCCCCGGCTCTTTGACGCCGTC
AGGGAAGGGGATCCGCGAGCCGTGGCCACGCTCCAGCAGATGTTCGCGGA
CAGATATCTGGGTGGGGTCGATCTTGATGCCTTCCAGGCAAGTGAGATGG
GCAACGCCGATCCGTCACGGCTCCTGAATTCCTTGATGGAGAGCCACGCC
AGGAACCATGGAGGTGTCAAGAGGAAAGGTCCGGCGACCGAGGGTGGGGA
GAAAGAGGGACTGTGAGACAATGAGTGGATCGAAAAGGCCCGCGCCAGGT
TTTTCGCGAACGAGGATCTGCTGCGTCTTGTGGACGACAACGACATCCTC
GACATCCTCCGCAACCCCGACCTCAAGCTTCACAAGATGCAGCTGAAAGC
CAACGATCCCTCCGCCCCCCGGCTCTTTGACGCCGTCAGGGAAGGGGATC
CGCGAGCCGTGGCCACGCTCCAGCAGATGTTCGCGGACAGATATCTGGGT
GGGGTCGATCTTGATGCCTTCCAGGCAAGTGAGATGGGCAACGCCGATCC
GTCACGGCTCCTGAATTCCTTGATGGAGAGCCACGCCAGGAACCATGGAG
GTGTCAAGAGGAAAGGTCCGGCGACCGAGGGTGGGGAGAAAGAGGGACTG
TGAGACAATGAGTGGATCGAAAAGGCCCGCGCCAGGTTTTTCGCGAACGA
GGATCTGCTGCGTCTTGTGGACGACAACGACATCCTCGACATCCTCCGCA
ACCCCGACCTCAAGCTTCACAAGATGCAGCTGAAAGCCAACGATCCCTCC
GCCCCCCGGCTCTTTGACGCCGTCAGGGAAGGGGATCCGCGAGCCGTGGC
CACGCTCCAGCAGATGTTCGCGGACAGATATCTGGGTGGGGTCGATCTTG
ATGCCTTCCAG
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Synonyms
Publications