EWM28447.1, cds2226 (CDS) Nannochloropsis gaditana

Overview
NameEWM28447.1
Unique Namecds2226
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1225560..1225697 -
Alignment locationCM002458.1:1225136..1225255 -
Alignment locationCM002458.1:1224863..1224991 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28447.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100627g1.10708.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1225560..1225697 -
CM002458.1supercontigCM002458.1:1225136..1225255 -
CM002458.1supercontigCM002458.1:1224863..1224991 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28447.1 vs. NCBI_GenBank
Match: gi|585110849|gb|EWM28447.1| (hypothetical protein Naga_100627g1 [Nannochloropsis gaditana])

HSP 1 Score: 259.61 bits (662), Expect = 9.740e-88
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MQLKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHARNHGGVKRKGPATEGGEKEGL 128
            MQLKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHARNHGGVKRKGPATEGGEKEGL
Sbjct:    1 MQLKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHARNHGGVKRKGPATEGGEKEGL 128          
BLAST of EWM28447.1 vs. NCBI_GenBank
Match: gi|585100446|gb|EWM20647.1| (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana])

HSP 1 Score: 119.013 bits (297), Expect = 2.844e-31
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    3 LKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHA 107
            LKAND S+P L  + + G PRA+ATLQQ F D+YLGG+DL+ FQ+ +W+++AR  FFA+E+LLR V D  +L  LRNP+L+  K SE   ADP+R+L+SL  + A
Sbjct:   95 LKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQA 199          
BLAST of EWM28447.1 vs. NCBI_GenBank
Match: gi|553185284|ref|XP_005854226.1| (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >gi|553189756|ref|XP_005855066.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422293989|gb|EKU21289.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422294833|gb|EKU22133.1| hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.62 bits (283), Expect = 3.267e-28
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0
Query:    3 LKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHA 107
            LKAND S+P L  + + G PRA+ATLQQ F D+YLGG+DL+ FQ   W+++AR  FFA+E+LLR V D  +L  LRNP+L+  K SE   ADP+R+L+SL  + A
Sbjct:  193 LKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQ---WVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQA 294          
The following BLAST results are available for this feature:
BLAST of EWM28447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110849|gb|EWM28447.1|9.740e-88100.00hypothetical protein Naga_100627g1 [Nannochloropsi... [more]
gi|585100446|gb|EWM20647.1|2.844e-3153.33hypothetical protein Naga_100289g4 [Nannochloropsi... [more]
gi|553185284|ref|XP_005854226.1|3.267e-2853.33hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2234rna2234Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications