rna2233, rna2233 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2233
Unique Name	rna2233
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2465
Alignment location	CM002458.1:1222222..1224966 +

Link to JBrowse

Properties


Property Name	Value
Product	aspartyl asparaginyl beta-hydroxylase
Orig transcript id	gnl\|cribi\|Naga_100627g2.10710.mrna
Orig protein id	gnl\|cribi\|Naga_100627g2.10710
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1222222..1224966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100627g2	gene2135	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2233	rna2233-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28449.1	cds2225	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1222222..1224966+
coding sequence from alignment at CM002458.1:1222222..1224966+

mRNA sequence

>rna2233 ID=rna2233|Name=rna2233|organism=Nannochloropsis gaditana|type=mRNA|length=2465bp
CGGAACATCTCACAACTTGGTGAGGGCAGTCTAAGTATACAACCTCCTGT
ATCTACACGAATGAAGACGGGAGCTCTTCCGTAGTATCGTTATGAAATGT
GACACGGCTGCTGGAGTTACATCGCGTCGGGCTGGGAAAGGAGAGGTCGT
CTTTTACACGCGCCGAGGATTTAGCGGGGGATCGTTGTCCGGCGTCAGAA
AATGCTCGATGCGGGCTTCCCTTAATCTTCTCACAAATTCCCCTTTTCAA
CAAGGCACCCACGCGCCTTAATAAGGTCGACCAGTTCGCAAGTAGTGGAG
GCTTTGGCTTAATTTGACTTTGTCGATGATTTCACTCGTGACTGGCCTGC
CTCATGTGTCCACAGGCTTGTATTTCACCGGAACGACGCGTCTTGATAAG
GCATTGATAGGGACGTCATGTCCATGTCTACATCTGGGCCATCCGCGATC
GCCTCCGGCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGAT
GCTGAAGACGAACGCAGGCGTTTTGCCCCGCCCCTCTCCTTCGCTTTTCT
ATTTCCCAGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACAT
TGGGCTCGGGTGTGAGTATAGCATGAACTAGCGGGGAAACGTTCGAGGCA
GAGGAGGAGAAAAGCTGGTCACAATTCTACCATTTTAGCCTAGTAGAGTA
TCGGACACATAGGGCCGAGCTCCAGCACCTATATTGCCGTGTTACTCATG
CAAAGACTTTCCACACAATTTATGCAGGCTGGAAGAGGAATATGCGACGA
TTAAACAAGAATACATGGGCCTCAAATCCCGGCAAATCGACTCCGACTAT
AAACGTCAAGATGGAGAGCACAGCTTGCACCATGGTTCGACGCGTGCGGG
AGGGATGGGAGGGGACGGACGGGAGCGATAGCGTCTGAGATCCCTCATTC
CGATCCAGCAATTGCAATGATATGCTCCTTGGACTTGCCTCGTTGGCCCG
CCGTAAACCTGACTACTTGTATTTTCCTGTGCTTGATCTCAATTGTCACG
CTGTACGACACATTGCGAGCCCTACCCTCACCGCGAGCCTCCCCATTTCA
ACCAGGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAATCCAGC
CTCTCTTTGCGGAACTGTGTCCAGAAACCAGCCGTCTCCTCCAAGAATTC
AACCGGCAATCGTTCTTGATGCGAGACACACCTTTTTCCTTCTCGTTCTT
CTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGACCCTCCA
ACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTGCCTCAAGGAGGAAAG
ACGGAGGCAAACGAGGAGAAGAAGGAGGGAATGAAGGAGGGGAGGAGGGA
GGGGAGGAGGGAGGGAGAGAAGGGAGGGAGCGAGGAAGGGAGGGAGCGAG
GGAATCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGCTCACAA
AGCCGCCCAGATCCTGTCCCCCCAGGGTGCGCTTCTTCTTCCGCCGAGTT
CGACTCCCTCGCCACCCTGCAAGCCCGCCTTCCCTGTGGCATCCGCATCG
GAGATCAAGTCCGGGAATGGGTGGAAGGAAAGTGTCTGGTGTTCGATGAC
GCTTATGAGCACGAAGTTTGGAACCTCACGGAGGAGGAGAGGGTTTTGCT
GCTGGTCGACTTTTGGCACCCGGAAATTGCCCTGGAGGAGCGTGAGGCCA
TCCAAAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTGGATGCAAGGAAAT
GGTGGGTGAAAGAGGAAGGGGAGGAAGGAGGGAGGATATGTGTAAACAGG
CGGTGGGTGCGATGAAGCATTCTGGAGGGGAAAGGACGCTGATGCCGGCT
ATCTTCCGATCCTCGATGTGTTCAACCTCTTTGGTGCGAGAGTCGTCACG
GGTATGGCGTGTGAAACGGTGACTGAGGTTGCTAAGGCAGGGAGGGGACC
AAGGATGTAGGACTGGGGAAGTAAATTGTTTATTCGATTAAGATGAAAGT
ATACTCAACGCCATGTCGATCGCTTCTTAGACAAGACGATACTATACTCA
AAGCCATATCGATCGTTTCTTTAATAAAGGTGATAGTTAACTCCTTGTGC
TTTCGTGTCGACGACCGTTCCGCCGCCACCCCTCCGTCCGGCCCTCCCCG
TCTACTGTACCTGACGCGACCGCCTTCCCGCCCGCCTCACCACCAAAAGC
TTCCACCTCTTCCTTAGCCATTTCGCTTTCTCCCAGCCCCTTGCCCTCCC
TCCGTACCGCTGGACAGGAACGTACGCTTCTCGGCCTTTTTCGGTCTTTG
TGCAGGCGCTCTCACAGTCCCTCTTTCTCCCCACCCTCGGTCGCCGGACC
TTTCCTCTTGACACCTCCATGGTTCCTGGCGTGGCTCTCCATCAAGGAAT
TCAGGAGCCGTGACG

protein sequence of rna2233

>rna2233-protein ID=rna2233-protein|Name=rna2233|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MSMSTSGPSAIASGFANKLQATIIRSGMLKTNAGVLPRPSPSLFYFPGIT
SKPVHDATQLHWARVLEEEYATIKQEYMGLKSRQIDSDYKRQDGEHSLHH
GRWDWHSYILKGQIQPLFAELCPETSRLLQEFNRQSFLMRDTPFSFSFFS
TLHGQSVIAPHTGPSNLRLRCHLPLIVPQGGKTEANEEKKEGMKEGRREG
RREGEKGGSEEGRERGNQGEGLQSAAGKDSSQSRPDPVPPGCASSSAEFD
SLATLQARLPCGIRIGDQVREWVEGKCLVFDDAYEHEVWNLTEEERVLLL
VDFWHPEIALEEREAIQKMFEFAARQGWMQGNGG

mRNA from alignment at CM002458.1:1222222..1224966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2233 ID=rna2233|Name=rna2233|organism=Nannochloropsis gaditana|type=mRNA|length=2745bp|location=Sequence derived from alignment at CM002458.1:1222222..1224966+ (Nannochloropsis gaditana)
CGGAACATCTCACAACTTGGTGAGGGCAGTCTAAGTATACAACCTCCTGT
ATCTACACGAATGAAGACGGGAGCTCTTCCGTAGTATCGTTATGAAATGT
GACACGGCTGCTGGAGTTACATCGCGTCGGgctgggaaaggagaggtcGT
CTTTTACACGCGCCGAGGATTTAGCGGGGGATCGTTGTCCGGCGTCAGAA
AATGCTCGATGCGGGCTTCCCTTAATCTTCTCACAAATTCCCCTTTTCAA
CAAGGCACCCACGCGCCTTAATAAGGTCGACCAGTTCGCAAGTAGTGGAG
GCTTTGGCTTAATTTGACTTTGTCGATGATTTCACTCGTGACTGGCCTGC
CTCATGTGTCCACAGGCTTGTATTTCACCGGAACGACGCGTCTTGATAAG
GCATTGATAGGGACGTCATGTCCATGTCTACATCTGGGCCATCCGCGATC
GCCTCCGGCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGAT
GCTGAAGACGAACGCAGGCGTTttgccccgcccctctccttcgcttttct
ATTTCCCAGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACAT
TGGGCTCGGGTGTGAGTATAGCATGAACTAGCGGGGAAACGttcgaggca
gaggaggagaaaagctgGTCACAATTCTACCATTTTAGCCTAGTAGAGTA
TCGGACACATAGGGCCGAGCTCCAGCACCTATATTGCCGTGTTACTCATG
CAAAGACTTTCCACACAATTTATGCAggctggaagaggaataTGCGACGA
TTAAACAAGAATACATGGGCCTCAAATCCCGGCAAATCGACTCCGACTAT
AAACGTCAAGATGGAGAGCACAGCTTGCACCATGGTTCGACGcgtgcggg
agggatgggaggggacggaCGGGAGCGATAGCGTCTGAGATCCCTCATTC
CGATCCAGCAATTGCAATGATATGCTCCTTGGACTTGCCTCGTTGGCCCG
CCGTAAACCTGACTACTTGTATTTTCCTGTGCTTGATCTCAATTGTCACG
CTGTACGACACATTGCGAGCCCTACCCTCACCGCGAGCCTCCCCATTTCA
ACCAGGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAATCCAGC
CTCTCTTTGCGGAACTGTGTCCAGAAACcagccgtctcctccaagaaTTC
AACCGGCAATCGTTCTTGATGCGAGACAcacctttttccttctcgttcTT
CTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGACCCTCCA
ACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTgcctcaaggaggaaag
acggaggcaaacgaggagaagaaggagggaatgaaggaggggaggaggga
ggggaggagggagggagagaagggagggagcgaggaagggagggagcgag
ggaatCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGCTCACAA
AGCCGCCCAGATCCTGTCCCCCCAGGGtgcgcttcttcttccgccgaGTT
CGactccctcgccaccctgcaagcccgccttccctgtgGCATCCGCATCG
GAGATCAAGTCCGGGAATgggtggaaggaaagtgTCTGGTGTTCGATGAC
GCTTATGAGCACGAAGTTTGGAAcctcacggaggaggagagggtttTGCT
GCTGGTCGACTTTTGGCACGTAAGCGtttcaaagaggaagggaggggcgg
gtgctTTGTTTTGGGGGACAATGGGGCTTCTGAAGGTGTGGGCAGGACTT
CCCTTGTCTCAATGAAACCCTTGAGTATTGATGCCTGTCAGCTGGGGGGC
TGCGGGTTTTGGAAAAGGATGgccgggaaagggaaggagggcggtgggag
ggaggaaacaaggGAGGGTCCGTGAAAATGCCTTTAACCCTTATGAACAG
CGCGCCACCTCTGTGCTCATATTGACTGCTCTTCTGTACCTATCCACAGC
CGGAAATTGCCCTGGAGGAGCGTGAGGCCATCCAAAAAATGTTTGAGTTC
GCGGCTAGGCAAGGGTGGATGCAAGGAAATGGTgggtgaaagaggaaggg
gaggaaggagggaggatatgTGTAAACAGGCGGTGGGTGCGATGAAGCAT
tctggaggggaaaggacgcTGATGCCGGCTATCTTCCGATCCTCGATGTG
TTCAACCTCTTTGGTGCGAGAGTCGTCACGGGTATGGCGTGTGAAACGGT
GACTGAGGTTGCtaaggcagggaggggaccaAGGATGTAGGACTGGGGAA
GTAAATTGTTTATTCGATTAAGATGAAAGTATACTCAACGCCATGTCGAT
CGCTTCTTAGACAAGACGATACTATACTCAAAGCCATATCGATCGTTTCT
TTAATAAAGGTGATAGTTAACTCCTTGTGCTTTCGTGTCGACGACCGTTC
CGCCGCCACCCCTCCGtccggccctccccgtctACTGTACCTGACGCgac
cgccttcccgcccgcctcaCCACCAAaagcttccacctcttccttaGCCA
TTTCGCTTTCTCCCagccccttgccctccctccgtaccGCTGGACAGGAA
CGTACGCTTCTCGGCCTTTTTCGGTCTTTGTGCAGGCGCTCTCACagtcc
ctctttctccccacccTCGGTCGCCGGACCTTTCCTCTTGACACCTCCAT
GGTTCCTGGCGTGGCTCTCCATCAAGGAATTCAGGAGCCGTGACG

Coding sequence (CDS) from alignment at CM002458.1:1222222..1224966+

>rna2233 ID=rna2233|Name=rna2233|organism=Nannochloropsis gaditana|type=CDS|length=4020bp|location=Sequence derived from alignment at CM002458.1:1222222..1224966+ (Nannochloropsis gaditana)
ATGTCCATGTCTACATCTGGGCCATCCGCGATCGCCTCCGGCTTTGCAAA
CAAATTACAAGCGACCATCATCAGAAGTGGGATGCTGAAGACGAACGCAG
GCGTTttgccccgcccctctccttcgcttttctATTTCCCAGGAATCACG
TCGAAGCCCGTGCATGACGCCACTCAGTTACATTGGGCTCGGGTgctgga
agaggaataTGCGACGATTAAACAAGAATACATGGGCCTCAAATCCCGGC
AAATCGACTCCGACTATAAACGTCAAGATGGAGAGCACAGCTTGCACCAT
GGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAATCCAGCCTCT
CTTTGCGGAACTGTGTCCAGAAACcagccgtctcctccaagaaTTCAACC
GGCAATCGTTCTTGATGCGAGACAcacctttttccttctcgttcTTCTCT
ACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGACCCTCCAACCT
CCGTCTGCGTTGCCACCTACCCCTCATCGTgcctcaaggaggaaagacgg
aggcaaacgaggagaagaaggagggaatgaaggaggggaggagggagggg
aggagggagggagagaagggagggagcgaggaagggagggagcgagggaa
tCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGCTCACAAAGCC
GCCCAGATCCTGTCCCCCCAGGGtgcgcttcttcttccgccgaGTTCGac
tccctcgccaccctgcaagcccgccttccctgtgGCATCCGCATCGGAGA
TCAAGTCCGGGAATgggtggaaggaaagtgTCTGGTGTTCGATGACGCTT
ATGAGCACGAAGTTTGGAAcctcacggaggaggagagggtttTGCTGCTG
GTCGACTTTTGGCACCCGGAAATTGCCCTGGAGGAGCGTGAGGCCATCCA
AAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTGGATGCAAGGAAATGGTg
ggtgaATGTCCATGTCTACATCTGGGCCATCCGCGATCGCCTCCGGCTTT
GCAAACAAATTACAAGCGACCATCATCAGAAGTGGGATGCTGAAGACGAA
CGCAGGCGTTttgccccgcccctctccttcgcttttctATTTCCCAGGAA
TCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACATTGGGCTCGGGTg
ctggaagaggaataTGCGACGATTAAACAAGAATACATGGGCCTCAAATC
CCGGCAAATCGACTCCGACTATAAACGTCAAGATGGAGAGCACAGCTTGC
ACCATGGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAATCCAG
CCTCTCTTTGCGGAACTGTGTCCAGAAACcagccgtctcctccaagaaTT
CAACCGGCAATCGTTCTTGATGCGAGACAcacctttttccttctcgttcT
TCTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGACCCTCC
AACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTgcctcaaggaggaaa
gacggaggcaaacgaggagaagaaggagggaatgaaggaggggaggaggg
aggggaggagggagggagagaagggagggagcgaggaagggagggagcga
gggaatCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGCTCACA
AAGCCGCCCAGATCCTGTCCCCCCAGGGtgcgcttcttcttccgccgaGT
TCGactccctcgccaccctgcaagcccgccttccctgtgGCATCCGCATC
GGAGATCAAGTCCGGGAATgggtggaaggaaagtgTCTGGTGTTCGATGA
CGCTTATGAGCACGAAGTTTGGAAcctcacggaggaggagagggtttTGC
TGCTGGTCGACTTTTGGCACCCGGAAATTGCCCTGGAGGAGCGTGAGGCC
ATCCAAAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTGGATGCAAGGAAA
TGGTgggtgaATGTCCATGTCTACATCTGGGCCATCCGCGATCGCCTCCG
GCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGATGCTGAAG
ACGAACGCAGGCGTTttgccccgcccctctccttcgcttttctATTTCCC
AGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACATTGGGCTC
GGGTgctggaagaggaataTGCGACGATTAAACAAGAATACATGGGCCTC
AAATCCCGGCAAATCGACTCCGACTATAAACGTCAAGATGGAGAGCACAG
CTTGCACCATGGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAA
TCCAGCCTCTCTTTGCGGAACTGTGTCCAGAAACcagccgtctcctccaa
gaaTTCAACCGGCAATCGTTCTTGATGCGAGACAcacctttttccttctc
gttcTTCTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGAC
CCTCCAACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTgcctcaagga
ggaaagacggaggcaaacgaggagaagaaggagggaatgaaggaggggag
gagggaggggaggagggagggagagaagggagggagcgaggaagggaggg
agcgagggaatCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGC
TCACAAAGCCGCCCAGATCCTGTCCCCCCAGGGtgcgcttcttcttccgc
cgaGTTCGactccctcgccaccctgcaagcccgccttccctgtgGCATCC
GCATCGGAGATCAAGTCCGGGAATgggtggaaggaaagtgTCTGGTGTTC
GATGACGCTTATGAGCACGAAGTTTGGAAcctcacggaggaggagagggt
ttTGCTGCTGGTCGACTTTTGGCACCCGGAAATTGCCCTGGAGGAGCGTG
AGGCCATCCAAAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTGGATGCAA
GGAAATGGTgggtgaATGTCCATGTCTACATCTGGGCCATCCGCGATCGC
CTCCGGCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGATGC
TGAAGACGAACGCAGGCGTTttgccccgcccctctccttcgcttttctAT
TTCCCAGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACATTG
GGCTCGGGTgctggaagaggaataTGCGACGATTAAACAAGAATACATGG
GCCTCAAATCCCGGCAAATCGACTCCGACTATAAACGTCAAGATGGAGAG
CACAGCTTGCACCATGGCCGATGGGACTGGCATTCCTACATATTGAAGGG
TCAAATCCAGCCTCTCTTTGCGGAACTGTGTCCAGAAACcagccgtctcc
tccaagaaTTCAACCGGCAATCGTTCTTGATGCGAGACAcacctttttcc
ttctcgttcTTCTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATAC
TGGACCCTCCAACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTgcctc
aaggaggaaagacggaggcaaacgaggagaagaaggagggaatgaaggag
gggaggagggaggggaggagggagggagagaagggagggagcgaggaagg
gagggagcgagggaatCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAG
ACAGCTCACAAAGCCGCCCAGATCCTGTCCCCCCAGGGtgcgcttcttct
tccgccgaGTTCGactccctcgccaccctgcaagcccgccttccctgtgG
CATCCGCATCGGAGATCAAGTCCGGGAATgggtggaaggaaagtgTCTGG
TGTTCGATGACGCTTATGAGCACGAAGTTTGGAAcctcacggaggaggag
agggtttTGCTGCTGGTCGACTTTTGGCACCCGGAAATTGCCCTGGAGGA
GCGTGAGGCCATCCAAAAAATGTTTGAGTTCGCGGCTAGGCAAGGGTGGA
TGCAAGGAAATGGTgggtga

Synonyms

Publications