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Properties
| Property Name | Value |
|---|
| Product | aspartyl asparaginyl beta-hydroxylase |
| Orig transcript id | gnl|cribi|Naga_100627g2.10711.mrna |
| Orig protein id | gnl|cribi|Naga_100627g2.10711 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1222222..1224966 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2232 ID=rna2232|Name=rna2232|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp
GCCATTACTCATGCGTTCAAAAATCTATGCCCAATTGTGTCCATCTGATC
CAATTACTTTTCGAAATGGCAATCACATAACCTGGAATGACTTTTCTTAT
AACGACAGGCAAATTAGGGAACATAGACACTATATTTATAACTTGTGGAG
CGGAAATTGCATATCGTGCCGCCAGAAGGCAGGAGCCCTTACATCTACAC
ATATAATATATACATAGAGCCAGTCACGCCGCGTCTTCTCTTGAAATAAG
CCACGTGCAAAAAAAGATGCAGCCTTATCGGCACCTGCACTCTAAGTCTT
TAAAGAGGCTTTCTCTCATAATTCTGGTCTTGCTGGTTGTGGTATCCTGG
TTCGTGTCGTGGCCATATTTGCATGAACCAATGGATCAACTGATGGCATC
CCTCAACACTGTAAACATTCCTCAGCGTAAAAAGTCCCTCATATTCGTCA
CCACGCATCTGTCAGAGACTCACTATACTTTTTTCGAGAAATGCTGGCCG
TCTTTACTTGCCAAAGGAGACATATATAGGCAGTCGGATTTTTTGGTCTT
GATCACCCTATCAGAAGGCACAGAGCCTAATTGGGAGTTTCTCAACGCCA
CCTTTGCCAACACGAACTATACTGCACAAGTTGTCAAAAACCCTGGGTAC
CATCAAGGCGCCGTTTTGGCATTAACGAAGGGGTATCTAAATAATTGGTT
CGACGACTACGAGTGGGTGATACGCGTCAACCCCGACGTGTTGATCCGTA
ACGATTCGTTTTTGTTTGAGCGCATGGACGACGCAAAGATTCAGGGTGTG
TTTGCGGATTGTTTCAATCGAGATTGTCCAACCGGCAATCATTGCTCTTC
TGCTAAAATCCACACTGACTTCTTCGCGATACGCCCTGAAGCTGTCTCGC
TCCAAGATGTCATGGAAGCTAATAAGGCAAAAATTCATGCCGAGTTAATG
GCCACGCAAGCCTTTTCCGGCATAGTCAACGCAGGGACCGATAGCTGGGT
TCCAGGCGCTGGGCCCCACAACGGAAATTGTCGAATAAGAGGAGAGGCGT
CACCGGTGATACACACCAATGTGATAAGGAATGTTTACCCTGCGTGTCTA
TCTTGGTACGATTAGTTTCCTCCCTTGGTGGGCAGCCGTCCAGCCCAGTT
GGACGTCGCGCGCAGCCGAACTCACGGTATCGGCTCAATAGATTGATAGG
AAGGACTGATATTTCAACAATGCGTAATGAATGCACAAATGAATGTGTGA
GGACATAAACACTGCTAAGAAATTCTACCACATTTCTGTCATTTGATTTT
GCCGCGGATTTATCTCAGCCATGACGTTCCGCACAATGCTCTGCTTGATC
TAAAGACGCACTTCGAACCGTTCATCTCATGGAAAGTCA back to topprotein sequence of rna2232 >rna2232-protein ID=rna2232-protein|Name=rna2232|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MICSLDLPRWPAVNLTTCIFLCLISIVTLYDTLRALPSPRASPFQPGRWD
WHSYILKGQIQPLFAELCPETSRLLQEFNRQSFLMRDTPFSFSFFSTLHG
QSVIAPHTGPSNLRLRCHLPLIVPQGGKTEANEEKKEGMKEGRREGRREG
EKGGSEEGRERGNQGEGLQSAAGKDSSQSRPDPVPPGCASSSAEFDSLAT
LQARLPCGIRIGDQVREWVEGKCLVFDDAYEHEVWNLTEEERVLLLVDFW
HPEIALEEREAIQKMFEFAARQGWMQGNGG back to topmRNA from alignment at CM002458.1:1222222..1224966+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2232 ID=rna2232|Name=rna2232|organism=Nannochloropsis gaditana|type=mRNA|length=2745bp|location=Sequence derived from alignment at CM002458.1:1222222..1224966+ (Nannochloropsis gaditana)
CGGAACATCTCACAACTTGGTGAGGGCAGTCTAAGTATACAACCTCCTGT
ATCTACACGAATGAAGACGGGAGCTCTTCCGTAGTATCGTTATGAAATGT
GACACGGCTGCTGGAGTTACATCGCGTCGGgctgggaaaggagaggtcGT
CTTTTACACGCGCCGAGGATTTAGCGGGGGATCGTTGTCCGGCGTCAGAA
AATGCTCGATGCGGGCTTCCCTTAATCTTCTCACAAATTCCCCTTTTCAA
CAAGGCACCCACGCGCCTTAATAAGGTCGACCAGTTCGCAAGTAGTGGAG
GCTTTGGCTTAATTTGACTTTGTCGATGATTTCACTCGTGACTGGCCTGC
CTCATGTGTCCACAGGCTTGTATTTCACCGGAACGACGCGTCTTGATAAG
GCATTGATAGGGACGTCATGTCCATGTCTACATCTGGGCCATCCGCGATC
GCCTCCGGCTTTGCAAACAAATTACAAGCGACCATCATCAGAAGTGGGAT
GCTGAAGACGAACGCAGGCGTTttgccccgcccctctccttcgcttttct
ATTTCCCAGGAATCACGTCGAAGCCCGTGCATGACGCCACTCAGTTACAT
TGGGCTCGGGTGTGAGTATAGCATGAACTAGCGGGGAAACGttcgaggca
gaggaggagaaaagctgGTCACAATTCTACCATTTTAGCCTAGTAGAGTA
TCGGACACATAGGGCCGAGCTCCAGCACCTATATTGCCGTGTTACTCATG
CAAAGACTTTCCACACAATTTATGCAggctggaagaggaataTGCGACGA
TTAAACAAGAATACATGGGCCTCAAATCCCGGCAAATCGACTCCGACTAT
AAACGTCAAGATGGAGAGCACAGCTTGCACCATGGTTCGACGcgtgcggg
agggatgggaggggacggaCGGGAGCGATAGCGTCTGAGATCCCTCATTC
CGATCCAGCAATTGCAATGATATGCTCCTTGGACTTGCCTCGTTGGCCCG
CCGTAAACCTGACTACTTGTATTTTCCTGTGCTTGATCTCAATTGTCACG
CTGTACGACACATTGCGAGCCCTACCCTCACCGCGAGCCTCCCCATTTCA
ACCAGGCCGATGGGACTGGCATTCCTACATATTGAAGGGTCAAATCCAGC
CTCTCTTTGCGGAACTGTGTCCAGAAACcagccgtctcctccaagaaTTC
AACCGGCAATCGTTCTTGATGCGAGACAcacctttttccttctcgttcTT
CTCTACCTTGCACGGGCAAAGCGTCATTGCTCCCCATACTGGACCCTCCA
ACCTCCGTCTGCGTTGCCACCTACCCCTCATCGTgcctcaaggaggaaag
acggaggcaaacgaggagaagaaggagggaatgaaggaggggaggaggga
ggggaggagggagggagagaagggagggagcgaggaagggagggagcgag
ggaatCAAGGAGAGGGTTTGCAGTCAGCAGCAGGGAAAGACAGCTCACAA
AGCCGCCCAGATCCTGTCCCCCCAGGGtgcgcttcttcttccgccgaGTT
CGactccctcgccaccctgcaagcccgccttccctgtgGCATCCGCATCG
GAGATCAAGTCCGGGAATgggtggaaggaaagtgTCTGGTGTTCGATGAC
GCTTATGAGCACGAAGTTTGGAAcctcacggaggaggagagggtttTGCT
GCTGGTCGACTTTTGGCACGTAAGCGtttcaaagaggaagggaggggcgg
gtgctTTGTTTTGGGGGACAATGGGGCTTCTGAAGGTGTGGGCAGGACTT
CCCTTGTCTCAATGAAACCCTTGAGTATTGATGCCTGTCAGCTGGGGGGC
TGCGGGTTTTGGAAAAGGATGgccgggaaagggaaggagggcggtgggag
ggaggaaacaaggGAGGGTCCGTGAAAATGCCTTTAACCCTTATGAACAG
CGCGCCACCTCTGTGCTCATATTGACTGCTCTTCTGTACCTATCCACAGC
CGGAAATTGCCCTGGAGGAGCGTGAGGCCATCCAAAAAATGTTTGAGTTC
GCGGCTAGGCAAGGGTGGATGCAAGGAAATGGTgggtgaaagaggaaggg
gaggaaggagggaggatatgTGTAAACAGGCGGTGGGTGCGATGAAGCAT
tctggaggggaaaggacgcTGATGCCGGCTATCTTCCGATCCTCGATGTG
TTCAACCTCTTTGGTGCGAGAGTCGTCACGGGTATGGCGTGTGAAACGGT
GACTGAGGTTGCtaaggcagggaggggaccaAGGATGTAGGACTGGGGAA
GTAAATTGTTTATTCGATTAAGATGAAAGTATACTCAACGCCATGTCGAT
CGCTTCTTAGACAAGACGATACTATACTCAAAGCCATATCGATCGTTTCT
TTAATAAAGGTGATAGTTAACTCCTTGTGCTTTCGTGTCGACGACCGTTC
CGCCGCCACCCCTCCGtccggccctccccgtctACTGTACCTGACGCgac
cgccttcccgcccgcctcaCCACCAAaagcttccacctcttccttaGCCA
TTTCGCTTTCTCCCagccccttgccctccctccgtaccGCTGGACAGGAA
CGTACGCTTCTCGGCCTTTTTCGGTCTTTGTGCAGGCGCTCTCACagtcc
ctctttctccccacccTCGGTCGCCGGACCTTTCCTCTTGACACCTCCAT
GGTTCCTGGCGTGGCTCTCCATCAAGGAATTCAGGAGCCGTGACG back to topCoding sequence (CDS) from alignment at CM002458.1:1222222..1224966+ >rna2232 ID=rna2232|Name=rna2232|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at CM002458.1:1222222..1224966+ (Nannochloropsis gaditana)
ATGATATGCTCCTTGGACTTGCCTCGTTGGCCCGCCGTAAACCTGACTAC
TTGTATTTTCCTGTGCTTGATCTCAATTGTCACGCTGTACGACACATTGC
GAGCCCTACCCTCACCGCGAGCCTCCCCATTTCAACCAGGCCGATGGGAC
TGGCATTCCTACATATTGAAGGGTCAAATCCAGCCTCTCTTTGCGGAACT
GTGTCCAGAAACcagccgtctcctccaagaaTTCAACCGGCAATCGTTCT
TGATGCGAGACAcacctttttccttctcgttcTTCTCTACCTTGCACGGG
CAAAGCGTCATTGCTCCCCATACTGGACCCTCCAACCTCCGTCTGCGTTG
CCACCTACCCCTCATCGTgcctcaaggaggaaagacggaggcaaacgagg
agaagaaggagggaatgaaggaggggaggagggaggggaggagggaggga
gagaagggagggagcgaggaagggagggagcgagggaatCAAGGAGAGGG
TTTGCAGTCAGCAGCAGGGAAAGACAGCTCACAAAGCCGCCCAGATCCTG
TCCCCCCAGGGtgcgcttcttcttccgccgaGTTCGactccctcgccacc
ctgcaagcccgccttccctgtgGCATCCGCATCGGAGATCAAGTCCGGGA
ATgggtggaaggaaagtgTCTGGTGTTCGATGACGCTTATGAGCACGAAG
TTTGGAAcctcacggaggaggagagggtttTGCTGCTGGTCGACTTTTGG
CACCCGGAAATTGCCCTGGAGGAGCGTGAGGCCATCCAAAAAATGTTTGA
GTTCGCGGCTAGGCAAGGGTGGATGCAAGGAAATGGTgggtgaATGATAT
GCTCCTTGGACTTGCCTCGTTGGCCCGCCGTAAACCTGACTACTTGTATT
TTCCTGTGCTTGATCTCAATTGTCACGCTGTACGACACATTGCGAGCCCT
ACCCTCACCGCGAGCCTCCCCATTTCAACCAGGCCGATGGGACTGGCATT
CCTACATATTGAAGGGTCAAATCCAGCCTCTCTTTGCGGAACTGTGTCCA
GAAACcagccgtctcctccaagaaTTCAACCGGCAATCGTTCTTGATGCG
AGACAcacctttttccttctcgttcTTCTCTACCTTGCACGGGCAAAGCG
TCATTGCTCCCCATACTGGACCCTCCAACCTCCGTCTGCGTTGCCACCTA
CCCCTCATCGTgcctcaaggaggaaagacggaggcaaacgaggagaagaa
ggagggaatgaaggaggggaggagggaggggaggagggagggagagaagg
gagggagcgaggaagggagggagcgagggaatCAAGGAGAGGGTTTGCAG
TCAGCAGCAGGGAAAGACAGCTCACAAAGCCGCCCAGATCCTGTCCCCCC
AGGGtgcgcttcttcttccgccgaGTTCGactccctcgccaccctgcaag
cccgccttccctgtgGCATCCGCATCGGAGATCAAGTCCGGGAATgggtg
gaaggaaagtgTCTGGTGTTCGATGACGCTTATGAGCACGAAGTTTGGAA
cctcacggaggaggagagggtttTGCTGCTGGTCGACTTTTGGCACCCGG
AAATTGCCCTGGAGGAGCGTGAGGCCATCCAAAAAATGTTTGAGTTCGCG
GCTAGGCAAGGGTGGATGCAAGGAAATGGTgggtga back to top
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