rna2220, rna2220 (mRNA) Nannochloropsis gaditana

Overview
Namerna2220
Unique Namerna2220
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1502
Alignment locationCM002458.1:1193416..1195086 -

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Properties
Property NameValue
Productprogrammed cell death protein 5
Orig transcript idgnl|cribi|Naga_100617g2.7553.mrna
Orig protein idgnl|cribi|Naga_100617g2.7553
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1193416..1195086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100617g2gene2123Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2220rna2220-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28461.1cds2212Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2220 ID=rna2220|Name=rna2220|organism=Nannochloropsis gaditana|type=mRNA|length=1502bp
GATGTCAACGGGCAGCTCAGGATTCAGCTGTTGTCCTGCCAGCATGCACC
AGTAGTCTCGGGCGGACAGGAAGCTAGCGACTGAGGGAGGGGAAACATGA
CCTTGAAAAACTCCAGCACCCTTCAGTTAAGACGGCGGCGGAAGCGCGTT
ATCAATGTGATATCCATATTTGTATACACCTGGCCTTTTTGTGGAGGTGC
TTTTCATGCCTGGCAGCCCCGCGCCCTCCTCTACCCGTACTCGCAAGGCC
CGCCGACTAAGACCCGCCCCCCGCCCAAATTGCACGCTTCCTCCCCGATA
CCTTCATCTCTGGATGATTCGGAGGTCCCCAGTCGCATAAGTCATTTGGA
AGAAGCACCTGGCATTTCGAAACATCCTGCGCCTCGGGTGTTCAGGGACG
GCGCAAGTCTGGAAGGCGTTGGCCGGGGGCGAACTCCCTCTTCCTCGTTG
CCCGTCGCGTCGGGAGATACCGCGTTGCTTTTGCCGCCAAAAAAGACAAG
GCACGCAGCATGGCATCGAAACATGGATATTTCCACGAAAAGATCGAGTC
CCGTCGCCACAAAGAAAACGCCGCGTCTGGGAAAGCCAGCGCACTTGCCG
GGTCGACCTCCTCGGGCACAAGACGGACCTCGCACGGGACCCCGGACGCA
GCAGAATGGAACAGGAGCTGGCGGCACGGCGTTCACGTTGCCATGCCACC
GAGACATCAACAAAGAGCTCCTTCGCCGCGGGGCCGATGCCGAGAAACTG
CTGAAGTATGCGGACGCCATGGGCGTGGGGATGAACAGCGTCAACGTGGC
TACCTGCCTGAACCGTCTCTCCAAAGCCTGGAGCCCCCGCCACGGCCCGA
CACGGCCCTCGCCGGCCCAGGACCCCCGTCTGCGCCGCCTCCTCCTCCAT
ACCCACACTTGCCTCCCGGAGTGCCAGGCTGCGGAGTTGAGCATCATCCT
GAACGGCGTAAGCAAGCTGGGTCTCGATCCGGGCCCAGGGTTTTGGCGCA
CTTCCCGCGACCTGTCCCTCGCCCTCCTACCCACCTTGGACCAAAACGCC
CACTTTGTCCAGATTTTGAACGCCTACAGCCGGGCCCGCTTTCCCCCGGG
ACAGGCGTGGGTGCAGGCCTTTGTCCTGGCGTCCGCCCCCTCCCTCCCGT
CCTGGACCGCGCGGGAATTGGCTTCCTTGGTCAATTCCCTGGGCAATTTG
CGGCCAGCGGGCGTACACTGTGCCTACTTGACGCGCCTACGGGACGCGGT
CTTGGCTTGCGTGCAAGGAGGGGGGATGCCGGCGCGGGAGTTGGCTACCT
GCTTGAGTGGCTTTGGCAAAATGGCCACGGGCCCGCACCTCCCCCCGCCC
TCGCCCTGTGCCCCCGCCTTCCACCCCGGCCGTCCGCTCTTGGATGCGAT
GGTGGAGGCCTCTTTCCCTTTGCTGGAGACATTCGATCCTCAGGGCTTGG
CGGCCCTGATCAACGGGTTCGTGCACTTGCGATATTGCCCGGGGCGGAGG
GA
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protein sequence of rna2220

>rna2220-protein ID=rna2220-protein|Name=rna2220|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MEPAGELDLPPGFTAAGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFM
LDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLI
EMLEQVSSQVDKKATKVTIQRRRCLDEDEDDNDDDML
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mRNA from alignment at CM002458.1:1193416..1195086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2220 ID=rna2220|Name=rna2220|organism=Nannochloropsis gaditana|type=mRNA|length=1671bp|location=Sequence derived from alignment at CM002458.1:1193416..1195086- (Nannochloropsis gaditana)
ACATAGCTGCCACAGGTTCGTTCCATGGAGCCAGCAGGAGAATTGGATTT
GCCGCCTGGGTTTACTGCAGCTGGTGCCGGGATGTCGGGGGCAGGCGGTA
GGGGTATGTCGACCGAAGAAATGGAGGCACAAAAAGCAAAGGTGGGCGAC
AGATGGGTCATTTTTTTTGTCAGGTGCCGTGGGAGGAAGTTGTCTAGAGG
GGAGACATGGCACCTTCTGACCGGGTTTTTCTTCTTGCCCTAACCCCCCT
ATCTCATCCCTCACTCTGGTAGCATGCTGAAATGGAAGAACGCCGACAGT
TTATGTTGGACCAAATTTTATCACCAGAAGCCAAGGAACGGCTTGCTCGC
ATTGGTACGTAGGATGGGATCGTTAGAATTGTGGCGAGCGACTATGTAGT
GTACGTGTGTATGCACGCTATATCCTGTGTCTCAAATTGCTCCGTCTTAC
GATGCGTCTTCGTGATGACATTTCTCAGCAGTTTTAAGGCAGCATGACCA
TTATGTATCGATATGATGACGTGTATGCGAGGCAATGAATACATAAGAAG
GCGTCGTGCATGCTCCTCTCTTTTATTTCCCCTCCTCTGTTTGATCCCCC
CTATCTCGGCCTGGCACACTCAACCATCCAATTCCCGAATTACTTTGCCA
CTTTCAGCCATTGTCCGCAAGGAAAAAGTGCGTGGGGTTCAAGACATGCT
CATTCAGGCAGCCACGTCGGGTCGCTTGCGGGGGAAGGTATCAGAAGAAC
AACTCATCGAGATGCTGGAACAGGTCTCTTCCCAAGTGGACAAAAAGGCC
ACCAAGGTGACCATTCAACGGCGTCGGTGTCTGGACGAGGACGAGGATGA
CAACGATGACGACATGCTCTGAGGGCAGGGGGAGTCGTCTCGGTGCCCGT
GGACTAGGTCCCGGGCAAGAGGAACAGCGCTCCCTAGAAGGCAATGTACA
GCAGGGTTTTCAGTAGATTAAGTGAAATTAAGCTCGTAAGGCAACAACCT
GATTAGAATTCATTCGTTTTTTGGTTTTCATGGAGACTTTGGCGCGACTC
AATGCATGCCATCACCCTAGTCTGGTACGTGGCTCAGACATGGCCGCCCC
TTGCCCCTTAGTCCCAAAATCTCCAGGACTAGTTTGACCTTTCTCTTGAT
ATTCCGCTCTCTGTTTCAATGCCTGACCTGGTAAAACGAAGCAAATGATT
CTTAAACGGGCGTACACATAGGTTCTATGCATATTCGTTAATCTAAGAAC
GAGGGGGAGTGCCTCAAGGTAGAAAGAAGAGGGCGCGTGGGAGAAAAGAA
GAACTGGTGCCCCGGGCGCGGTCAACACATCCCCATGCACGTATTCATGC
TGCAAGGATTTTATAAAAATCTCAAGCCTGCCATCTCTATTCGGAGCCAC
TGATTTTTTCCCCCTCCCAATTTATACTGGAGGATGTACCCGCAAACCCA
CGTGTTTCCCCTTGAATTAGTCGAGTTATAGGATACATTAGGATAGATCC
CGACATGCAAAGTACTTAGTCGAACTTTTCAAGTCATATTTTCATTATTA
CGTAAAGTAGCAAAGAGACAGAGTAAGGAAAAAACGACGAACATTTCAGG
AAAAAGTAGAAAAAGAAAAAAAATCTCGGCCGATTGTCGGTCTTGTACGT
GGAAAAGGCAACCGGGAGGTC
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Coding sequence (CDS) from alignment at CM002458.1:1193416..1195086-

>rna2220 ID=rna2220|Name=rna2220|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002458.1:1193416..1195086- (Nannochloropsis gaditana)
CCATTGTCCGCAAGGAAAAAGTGCGTGGGGTTCAAGACATGCTCATTCAG
GCAGCCACGTCGGGTCGCTTGCGGGGGAAGGTATCAGAAGAACAACTCAT
CGAGATGCTGGAACAGGTCTCTTCCCAAGTGGACAAAAAGGCCACCAAGG
TGACCATTCAACGGCGTCGGTGTCTGGACGAGGACGAGGATGACAACGAT
GACGACATGCTCTGACATGCTGAAATGGAAGAACGCCGACAGTTTATGTT
GGACCAAATTTTATCACCAGAAGCCAAGGAACGGCTTGCTCGCATTGATG
GAGCCAGCAGGAGAATTGGATTTGCCGCCTGGGTTTACTGCAGCTGGTGC
CGGGATGTCGGGGGCAGGCGGTAGGGGTATGTCGACCGAAGAAATGGAGG
CACAAAAAGCAAAGCCATTGTCCGCAAGGAAAAAGTGCGTGGGGTTCAAG
ACATGCTCATTCAGGCAGCCACGTCGGGTCGCTTGCGGGGGAAGGTATCA
GAAGAACAACTCATCGAGATGCTGGAACAGGTCTCTTCCCAAGTGGACAA
AAAGGCCACCAAGGTGACCATTCAACGGCGTCGGTGTCTGGACGAGGACG
AGGATGACAACGATGACGACATGCTCTGACATGCTGAAATGGAAGAACGC
CGACAGTTTATGTTGGACCAAATTTTATCACCAGAAGCCAAGGAACGGCT
TGCTCGCATTGATGGAGCCAGCAGGAGAATTGGATTTGCCGCCTGGGTTT
ACTGCAGCTGGTGCCGGGATGTCGGGGGCAGGCGGTAGGGGTATGTCGAC
CGAAGAAATGGAGGCACAAAAAGCAAAGCCATTGTCCGCAAGGAAAAAGT
GCGTGGGGTTCAAGACATGCTCATTCAGGCAGCCACGTCGGGTCGCTTGC
GGGGGAAGGTATCAGAAGAACAACTCATCGAGATGCTGGAACAGGTCTCT
TCCCAAGTGGACAAAAAGGCCACCAAGGTGACCATTCAACGGCGTCGGTG
TCTGGACGAGGACGAGGATGACAACGATGACGACATGCTCTGACATGCTG
AAATGGAAGAACGCCGACAGTTTATGTTGGACCAAATTTTATCACCAGAA
GCCAAGGAACGGCTTGCTCGCATTGATGGAGCCAGCAGGAGAATTGGATT
TGCCGCCTGGGTTTACTGCAGCTGGTGCCGGGATGTCGGGGGCAGGCGGT
AGGGGTATGTCGACCGAAGAAATGGAGGCACAAAAAGCAAAG
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Synonyms
Publications