EWM28461.1, cds2212 (CDS) Nannochloropsis gaditana

Overview
NameEWM28461.1
Unique Namecds2212
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1194946..1195062 -
Alignment locationCM002458.1:1194733..1194814 -
Alignment locationCM002458.1:1194215..1194429 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28461.1
Productprogrammed cell death protein 5
Orig transcript idgnl|cribi|Naga_100617g2.7553.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1194946..1195062 -
CM002458.1supercontigCM002458.1:1194733..1194814 -
CM002458.1supercontigCM002458.1:1194215..1194429 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002836PDCD5-related
Homology
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|585110869|gb|EWM28461.1| (programmed cell death protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 273.092 bits (697), Expect = 8.564e-93
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MEPAGELDLPPGFTAAGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDEDDNDDDML 137
            MEPAGELDLPPGFTAAGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDEDDNDDDML
Sbjct:    1 MEPAGELDLPPGFTAAGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDEDDNDDDML 137          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|645237762|ref|XP_008225358.1| (PREDICTED: DNA-binding protein DDB_G0278111 [Prunus mume])

HSP 1 Score: 110.153 bits (274), Expect = 1.929e-28
Identity = 60/115 (52.17%), Postives = 86/115 (74.78%), Query Frame = 0
Query:   16 AGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            A  G+ G+GG+  + EE  A +    E EERRQ ML QILS EA+ER+ARIA+V+ EK +GV+D++++AA  G++  KVSEE+LI +LEQ+++Q  K+ TKVTIQRRR + +D+D
Sbjct:   19 AQHGVGGSGGKQQNPEEQRANEDAKREAEERRQMMLSQILSAEARERIARIALVKPEKAKGVEDVILRAAQMGQIAEKVSEERLISLLEQINNQTTKQ-TKVTIQRRRSVLDDDD 132          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|470114948|ref|XP_004293666.1| (PREDICTED: DNA-binding protein DDB_G0278111 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 108.997 bits (271), Expect = 5.107e-28
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 0
Query:   22 GAGG-RGM-STEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            GAGG RG  +TE+ +A      E EERRQ ML QILS EA+ERLARIA+V+ EK RGV+D++++AA  G++  KVSEE+LI +LEQ+++Q  K+ TKVTIQRRR + ED+D
Sbjct:   22 GAGGARGQQNTEQQKANDDAKREAEERRQMMLSQILSSEARERLARIALVKPEKARGVEDVILRAAQMGQIAEKVSEERLISLLEQINNQTTKQ-TKVTIQRRRSVLEDDD 131          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|356512159|ref|XP_003524788.1| (PREDICTED: DNA-binding protein DDB_G0278111-like [Glycine max] >gi|947110105|gb|KRH58431.1| hypothetical protein GLYMA_05G127400 [Glycine max])

HSP 1 Score: 108.997 bits (271), Expect = 5.742e-28
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 0
Query:   20 MSGAGGRG--MSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            M+G GG G   ++E+ +AQ     E EERRQ ML QILS EA+ERLARIA+V+ EK RGV+D +++AA  G++  KVSEE+LI +LEQ+++Q  ++ TKVTIQRRR + ED+D
Sbjct:   18 MAGHGGVGNQQNSEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQ-TKVTIQRRRSVLEDDD 129          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|1139776723|gb|ONI10910.1| (hypothetical protein PRUPE_4G075200 [Prunus persica] >gi|1139776724|gb|ONI10911.1| hypothetical protein PRUPE_4G075200 [Prunus persica])

HSP 1 Score: 107.842 bits (268), Expect = 1.282e-27
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 0
Query:   16 AGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            A  G+ G+GG+  + E+  A +    E EERRQ ML QILS EA+ER+ARIA+V+ EK +GV+D++++AA  G++  KVSEE+LI +LEQ+++Q  K+ TKVTI RRR + +D+D
Sbjct:    6 AQHGVGGSGGKQQNPEQQRANEDAKREAEERRQMMLSQILSAEARERIARIALVKPEKAKGVEDVILKAAQMGQIAEKVSEERLISLLEQINNQTTKQ-TKVTIHRRRSVLDDDD 119          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|947110106|gb|KRH58432.1| (hypothetical protein GLYMA_05G127400 [Glycine max])

HSP 1 Score: 107.071 bits (266), Expect = 1.943e-27
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 0
Query:   19 GMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            G +   G   ++E+ +AQ     E EERRQ ML QILS EA+ERLARIA+V+ EK RGV+D +++AA  G++  KVSEE+LI +LEQ+++Q  ++ TKVTIQRRR + ED+D
Sbjct:    3 GFADLQGNQQNSEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQ-TKVTIQRRRSVLEDDD 113          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|297740643|emb|CBI30825.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 107.071 bits (266), Expect = 2.036e-27
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 0
Query:   25 GRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            G   ++E+ +AQ+    E +ERRQ ML QILS EA+ERLARIA+V+ EK RGV+D+L++AA  G++  KVSEE+LI +LEQ+++Q  K+ TKVTIQRRR + ED+D
Sbjct:   11 GNHQNSEQQKAQEDAKREADERRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQMGQIVEKVSEERLISLLEQINNQTTKQ-TKVTIQRRRSVLEDDD 115          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|1147553202|ref|XP_020092499.1| (DNA-binding protein DDB_G0278111 isoform X1 [Ananas comosus] >gi|1147553204|ref|XP_020092507.1| DNA-binding protein DDB_G0278111 isoform X2 [Ananas comosus])

HSP 1 Score: 107.457 bits (267), Expect = 2.107e-27
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 0
Query:   25 GRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            G   +T + +AQ+    E EERRQ ML QILS EA+ERLARIA+V+ +K RGV+D+L++AA +G++  KVSEE+LI +LEQ+++Q  K+ TKVTIQRRR + ED+D
Sbjct:   24 GNQQNTGQQKAQEDAKREAEERRQMMLSQILSAEARERLARIALVKPDKARGVEDVLLRAAQTGQISEKVSEERLISLLEQINTQTSKQ-TKVTIQRRRSVLEDDD 128          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|947093719|gb|KRH42304.1| (hypothetical protein GLYMA_08G082100 [Glycine max])

HSP 1 Score: 107.457 bits (267), Expect = 2.201e-27
Identity = 60/110 (54.55%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   21 SGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            S  GG   + E+ +AQ     E EERRQ ML QILS EA+ERLARIA+V+ EK RGV+D +++AA  G++  KVSEE+LI +LEQ+++Q  ++ TKVTIQRRR + ED+D
Sbjct:   20 SHGGGNQQNPEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQ-TKVTIQRRRSVLEDDD 128          
BLAST of EWM28461.1 vs. NCBI_GenBank
Match: gi|1162552450|ref|XP_020417745.1| (DNA-binding protein DDB_G0278111 [Prunus persica] >gi|1139776722|gb|ONI10909.1| hypothetical protein PRUPE_4G075200 [Prunus persica])

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-27
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 0
Query:   16 AGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDED 130
            A  G+ G+GG+  + E+  A +    E EERRQ ML QILS EA+ER+ARIA+V+ EK +GV+D++++AA  G++  KVSEE+LI +LEQ+++Q  K+ TKVTI RRR + +D+D
Sbjct:   19 AQHGVGGSGGKQQNPEQQRANEDAKREAEERRQMMLSQILSAEARERIARIALVKPEKAKGVEDVILKAAQMGQIAEKVSEERLISLLEQINNQTTKQ-TKVTIHRRRSVLDDDD 132          
The following BLAST results are available for this feature:
BLAST of EWM28461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110869|gb|EWM28461.1|8.564e-93100.00programmed cell death protein 5 [Nannochloropsis g... [more]
gi|645237762|ref|XP_008225358.1|1.929e-2852.17PREDICTED: DNA-binding protein DDB_G0278111 [Prunu... [more]
gi|470114948|ref|XP_004293666.1|5.107e-2857.66PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
gi|356512159|ref|XP_003524788.1|5.742e-2854.87PREDICTED: DNA-binding protein DDB_G0278111-like [... [more]
gi|1139776723|gb|ONI10910.1|1.282e-2750.43hypothetical protein PRUPE_4G075200 [Prunus persic... [more]
gi|947110106|gb|KRH58432.1|1.943e-2752.68hypothetical protein GLYMA_05G127400 [Glycine max][more]
gi|297740643|emb|CBI30825.3|2.036e-2755.66unnamed protein product, partial [Vitis vinifera][more]
gi|1147553202|ref|XP_020092499.1|2.107e-2755.66DNA-binding protein DDB_G0278111 isoform X1 [Anana... [more]
gi|947093719|gb|KRH42304.1|2.201e-2754.55hypothetical protein GLYMA_08G082100 [Glycine max][more]
gi|1162552450|ref|XP_020417745.1|2.212e-2750.43DNA-binding protein DDB_G0278111 [Prunus persica] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2220rna2220Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications