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Properties
| Property Name | Value |
|---|
| Product | Polycystin cation channel, PKD1/PKD2 |
| Orig transcript id | gnl|cribi|Naga_100190g2.3123.mrna |
| Orig protein id | gnl|cribi|Naga_100190g2.3123 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1185753..1188768 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2217 ID=rna2217|Name=rna2217|organism=Nannochloropsis gaditana|type=mRNA|length=1216bp
CCGTGCCTGCTGTGATATGCCTCTTTAATTTTTGCAGTAGACATGAAGCC
GGCTACAGTCCTCGTTTTTTAGCTTACACAGATTCCTTTCCTTTTCAACC
TACCCATCTTTGCAAATTTGATGCGAACCATCACCACAGCAGCACTGTTG
GGCCACGCCATGCCTGACACTGATACAAACCACTACCAGCACCAACAATA
CCATAGAGGAACGAATCCGGAGCCATCCTGGATGCACGAACAAGCCGCCG
GAGAGGCAGCTGGAGCGGCTGCGCAGCCTTACCCCTCCGCCGCTGCAACA
TCCCATACACACCAGAACCAGCACGAGACAACCCCTTTGCGGGGTAGTGC
GCCGTCATCCGTTGCCTCCTCAGCGGGCCGACCAAGCAAGCATGGAGCCA
TGTATCGCCCTTATTTGCGTCGGCAGGACATCCGTCGGGGCTGTTGCTTG
AGCATCTTTCTGGCCATAAACGCTGTTTGTGTGCTGAGCGCCCTCTCAGT
GGCTGTGGCAGAGATTCTGTCCATTGTATATCATGGTCTGTCGCCTTTGG
GAATAGCGATTCGTGTGTACGGGATCGTCTTCTCGATTGGAGTGGTTTTC
ACGGAGTTGGGGTGGACACAGGCGGTCCGCGACACCTGGCTTTTACAGAA
CTGGATCAGCCGGGGGGCCATCTATACCTTCGTAGGCCTGCTCTCCATCA
AACAAGAAGTAGAGCACGAGGCACGTATCAACATCGTCAACGTCTTCATC
TACTGCGCCGGTCTCGGGTTGATAGGACTCGGTGTCTTGTACTTTGTTAT
GGGCGTCTTCTGCTTGAAAGGAGTACGGGACCGGCGGGCTGCGGATTACA
CCATCCTTAAGTCGCAGGCGGAGTTGGAAGAGGCACTGCGGAGGCACGGC
GATGTGGGAAAAGATGATTTGGAGGATGCGCCGTCAACCTACCAGGCAGG
GGGGGGGGGGGGGTTCGAGAGTGGTGGTCTGAGGGGGCTGGGGGGGAGAA
GACAGAGGGTGGTTGGGACGGTGGGATGTACAGAGAGGGGAGCGGGAAGG
GGGGAAGGGGGCCTAGATTAGGAGGAGACGGTGGGCTATCGGCATTGTCA
ATAGCGACATGGGCGATCGGAAGGCATGGAGGGATGTTTTGGGGTCGAGC
ACATGGTGCAAGGAAAGAACACAAACAGCAGGAAAAGTCGACGGGAGACT
GGAGGCTCGTTCTGAC back to topprotein sequence of rna2217 >rna2217-protein ID=rna2217-protein|Name=rna2217|organism=Nannochloropsis gaditana|type=polypeptide|length=740bp
MHPPYKKIPIRLDHGGNVLLSLCELTPMERWQGYGVFPTKVVLHVILLVL
TTAAVLHDAARWSPYRLASQASACHFFAPAPCAAKMCGASPTVSYGWDNW
SNCFIFSTDELYAAVRGVVYNYFHIEDIALANYGVMRMAAGEVDDSAGTS
AINVDGHNAPRRTNHSEKLIPRPPLLTASLQSSTNDSEHHYHRQYPLTLA
DLGPLDTRKNTPAAVEDFVARLLTLAIDLELTDELAEDGANVCYLWHVRV
LYDIRNKAEIAVSQKTYIRAFCDALPRKGGDQPGRMDGNRQVFQARRLIQ
GTQTFLGESLGSDGGRRQALFPFIHPLWTSTVHVDRQAYVLSAGILGISL
WLVVFLLCELYGSCCILRRARALVGMGRRVSYQGLLPPGRTRSTDSLASL
GSRSTAWKRGLDWDRDVHLSTKFHFVSFWQLLLLTGTLVSGIESLCALRH
VGPLAPPMVTDVHAAWRGLGAACLWVYACRYMHHSDRLYAIVLVINHSVP
RVARMLVQVVPLFVGYAWFGVMFFAPYLPRFGSFSQAFATLFCVWNGDGL
MDVQGELGTWFPGLGFAYLSVFVGVFSYVVLNILLVVVQQTLVYVQVLGR
GKRRLHRLLLRREGGKKPGGEGREGGDGDRDVVEEGASNKGRQSGGRHQG
LDEEKDFLALLDLTHGQDATRAFFEGESGGRGGGGERRENKGERGTMWPE
KGRADGCKGLRQRRGGRGEREGGKRTPAVNWDQHDAGSGV back to topmRNA from alignment at CM002458.1:1185753..1188768- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2217 ID=rna2217|Name=rna2217|organism=Nannochloropsis gaditana|type=mRNA|length=3016bp|location=Sequence derived from alignment at CM002458.1:1185753..1188768- (Nannochloropsis gaditana)
GATGATGGAAGGCACTAGCAACGCAACTAGCAATTAGTGTTATTAGTTGT
GTATCCACGCTTTGGGCAAGTAGCTGATGTCAAAATTTTCACTAAAAATC
ACATCTTGTACCAATACAAGCAGGGTTATGGTTTTTGGTGCTAAACACAC
ACCGTTTCATTCCCTGTCGTACTTGACAGGCAACGTCAACTGAGAAGGAG
CCTTGGGCGAAATATGCCACTGCTTGCGTGCTTCGCTACTATCCATCACG
CCCAATAGCAAAATTACGACTATTAAATGTGATGCATCCTCCCTACAAAA
AGATCCCCATCCGCTTGGACCATGGAGGCAACGTCCTCCTTTCCCTCTGC
GAGCTCACGCCGATGGAGCGCTGGCAAGGTTATGGTGTCTTTCCAACCAA
AGTGGTCTTGCACGTGATCCTCTTGGTGCTTACCACAGCCGCCGTATTAC
ACGACGCCGCACGCTGGAGCCCTTACCGTCTCGCAAGTCAAGCATCTGCG
TGTCATTTTTTCGCTCCCGCTCCCTGTGCAGCCAAGATGTGTGGGGCTTC
TCCTACTGTAAGCTACGGTTGGGACAATTGGAGCAACTGCTTCATATTCT
CGACAGATGAACTGTATGCAGCGGTGCGGGGGGTAGTTTACAATTATTTC
CACATCGAAGACATTGCGCTGGCGAATTATGGAGTAATGAGGATGGCGGC
GGGTGAAGTGGACGATTCTGCGGGCACATCGGCAATCAACGTGGACGGTC
ACAACGCCCCACGACGCACGAATCATTCGGAGAAACTGATTCCTCGCCCA
CCTTTGCTGACGGCATCACTGCAAAGCAGCACCAATGATTCGGAGCACCA
CTACCATCGTCAGTACCCGCTGACCCTTGCGGACCTGGGGCCCTTGGATA
CACGCAAGAATACTCCCGCAGCTGTCGAGGACTTCGTCGCCCGCCTGCTT
ACCTTGGCCATAGACCTGGAGCTCACGGACGAACTGGCGGAAGACGGCGC
CAATGTCTGCTACCTCTGGCATGTCCGGGTCCTGTATGACATTCGGAACA
AAGCAGAAATCGCAGTCAGTCAGAAGACTTACATTCGGGCCTTTTGCGAT
GCTTTACCCAGAAAAGGAGGCGACCAGCCCGGGCGTATGGACGGAAATCG
ACAGGTCTTTCAAGCGCGCCGTCTCATCCAGGGGACGCAAACGTTTCTGG
GCGAAAGCCTGGGGTCAGACGGGGGGCGGCGGCAGGCCTTATTTCCCTTT
ATCCACCCTCTTTGGACCTCCACGGTGCATGTGGACAGACAGGCATACGT
GCTCAGCGCAGGTATTCTGGGGATAAGCCTCTGGCTCGTTGTTTTCCTCC
TGTGCGAGCTCTACGGCTCTTGTTGCATCCTGCGCCGGGCGCGGGCCCTC
GTAGGCATGGGCCGCCGCGTCTCCTACCAGGGACTTCTCCCTCCGGGGCG
CACCCGCAGCACCGACAGCCTGGCCAGCCTGGGGAGCCGAAGTACGGCCT
GGAAAAGGGGCTTGGACTGGGACCGCGACGTGCACCTGAGCACCAAGTTC
CATTTCGTCTCGTTCTGGCAGCTGTTGCTGCTGACGGGCACCCTAGTGTC
GGGAATCGAGTCGCTTTGTGCCTTGCGCCACGTGGGGCCGCTTGCCCCTC
CCATGGTGACGGACGTGCACGCAGCTTGGCGAGGGCTGGGCGCTGCCTGT
CTGTGGGTGTATGCCTGTCGGTATATGCACCACTCTGACAGGTGAGGGAG
ACAAGGGGGCCGGTGGTGGAAGGACGGGAGGGAGGCTACGGGCTTGTCCG
GTGCTAGCGGGGTGGGGCCCTATCACTGCTTGTTTTGGCTTTCCTTTCTC
TGTCCCGCTGTCATGTTCCTATCATGTATCGCTGGGGTAACCTGCTCCGC
CCCGCGCGTTCTCTTATCCCCTTTCCTTCAGACTCTACGCCATCGTCCTG
GTCATCAACCACAGTGTCCCCCGCGTCGCCCGGATGCTCGTCCAGGTCGT
GCCGCTCTTTGTCGGCTACGCATGGTTTGGGGTCATGTTCTTCGCCCCTT
ACTTGCCTCGCTTTGGCTCCTTCTCTCAAGCTTTCGCCACCCTTTTTTGT
GTGTGGAACGGGGACGGCTTGATGGACGTGCAGGGGGAACTCGGCACCTG
GTTTCCCGGTCTGGGTTTCGCCTACCTGTCGGTGTTTGTCGGGGTTTTTT
CCTACGTGGTATTGAACATCTTGTTGGTGGTGGTGCAGCAGACTTTGGTG
TATGTCCAAGTCCTAGGCCGGGGGAAGCGGCGGCTGCACCGGTTGCTTCT
ACGACGGGAGGGGGGGAAGAAGCCCGGTGGGGAAGGGAGGGAAGGAGGGG
ATGGGGACAGGGACGTGGTGGAGGAAGGAGCTTCCAACAAAGGGAGACAA
AGTGGTGGGAGGCACCAGGGACTGGACGAAGAGAAGGACTTTTTGGCCCT
GCTGGATTTGACGCACGGGCAGGATGCGACCAGGGCATTTTTTGAGGGGG
AAAGCGGAGGGAGGGGCGGGGGCGGAGAGAGGAGGGAGAACAAGGGGGAG
CGAGGAACCATGTGGCCCGAGAAAGGGAGGGCAGACGGGTGCAAAGGACT
GCGGCAGCGGCGTGGAGGCCGAGGGGAAAGGGAAGGGGGAAAGAGAACGC
CGGCCGTGAACTGGGATCAACATGATGCCGGCAGTGGGGTGTAAGGGGGG
CTTGCAGAGAATATCCGCCCAGAGGAGAAAGCAAGCAGATCGAGGGACAA
GATCATTTCATGCTGGGCGATGGTGCTGATTTGTGTGACATGGCTTACAA
AGGGAAGTGTAGATATGTGCTGGATTGGACTGTAGGCGCATTTCGTTGCT
TGAGGTAGGAGGGTAGAGGGTATGATGATGACCCCGCTGGCATCGAAAGC
TGTACAGATAGCTCGACCGAGACGACCTCTCTTCGGTCCGAGAAAGCAAT
ACACAAGGCTGGTAACGGCAATGTGTGCTGTGTCAGAACGAGCCTCCAGT
CTCCCGTCGACTTTTC back to topCoding sequence (CDS) from alignment at CM002458.1:1185753..1188768- >rna2217 ID=rna2217|Name=rna2217|organism=Nannochloropsis gaditana|type=CDS|length=4446bp|location=Sequence derived from alignment at CM002458.1:1185753..1188768- (Nannochloropsis gaditana)
ACTCTACGCCATCGTCCTGGTCATCAACCACAGTGTCCCCCGCGTCGCCC
GGATGCTCGTCCAGGTCGTGCCGCTCTTTGTCGGCTACGCATGGTTTGGG
GTCATGTTCTTCGCCCCTTACTTGCCTCGCTTTGGCTCCTTCTCTCAAGC
TTTCGCCACCCTTTTTTGTGTGTGGAACGGGGACGGCTTGATGGACGTGC
AGGGGGAACTCGGCACCTGGTTTCCCGGTCTGGGTTTCGCCTACCTGTCG
GTGTTTGTCGGGGTTTTTTCCTACGTGGTATTGAACATCTTGTTGGTGGT
GGTGCAGCAGACTTTGGTGTATGTCCAAGTCCTAGGCCGGGGGAAGCGGC
GGCTGCACCGGTTGCTTCTACGACGGGAGGGGGGGAAGAAGCCCGGTGGG
GAAGGGAGGGAAGGAGGGGATGGGGACAGGGACGTGGTGGAGGAAGGAGC
TTCCAACAAAGGGAGACAAAGTGGTGGGAGGCACCAGGGACTGGACGAAG
AGAAGGACTTTTTGGCCCTGCTGGATTTGACGCACGGGCAGGATGCGACC
AGGGCATTTTTTGAGGGGGAAAGCGGAGGGAGGGGCGGGGGCGGAGAGAG
GAGGGAGAACAAGGGGGAGCGAGGAACCATGTGGCCCGAGAAAGGGAGGG
CAGACGGGTGCAAAGGACTGCGGCAGCGGCGTGGAGGCCGAGGGGAAAGG
GAAGGGGGAAAGAGAACGCCGGCCGTGAACTGGGATCAACATGATGCCGG
CAGTGGGGTGTAAATGCATCCTCCCTACAAAAAGATCCCCATCCGCTTGG
ACCATGGAGGCAACGTCCTCCTTTCCCTCTGCGAGCTCACGCCGATGGAG
CGCTGGCAAGGTTATGGTGTCTTTCCAACCAAAGTGGTCTTGCACGTGAT
CCTCTTGGTGCTTACCACAGCCGCCGTATTACACGACGCCGCACGCTGGA
GCCCTTACCGTCTCGCAAGTCAAGCATCTGCGTGTCATTTTTTCGCTCCC
GCTCCCTGTGCAGCCAAGATGTGTGGGGCTTCTCCTACTGTAAGCTACGG
TTGGGACAATTGGAGCAACTGCTTCATATTCTCGACAGATGAACTGTATG
CAGCGGTGCGGGGGGTAGTTTACAATTATTTCCACATCGAAGACATTGCG
CTGGCGAATTATGGAGTAATGAGGATGGCGGCGGGTGAAGTGGACGATTC
TGCGGGCACATCGGCAATCAACGTGGACGGTCACAACGCCCCACGACGCA
CGAATCATTCGGAGAAACTGATTCCTCGCCCACCTTTGCTGACGGCATCA
CTGCAAAGCAGCACCAATGATTCGGAGCACCACTACCATCGTCAGTACCC
GCTGACCCTTGCGGACCTGGGGCCCTTGGATACACGCAAGAATACTCCCG
CAGCTGTCGAGGACTTCGTCGCCCGCCTGCTTACCTTGGCCATAGACCTG
GAGCTCACGGACGAACTGGCGGAAGACGGCGCCAATGTCTGCTACCTCTG
GCATGTCCGGGTCCTGTATGACATTCGGAACAAAGCAGAAATCGCAGTCA
GTCAGAAGACTTACATTCGGGCCTTTTGCGATGCTTTACCCAGAAAAGGA
GGCGACCAGCCCGGGCGTATGGACGGAAATCGACAGGTCTTTCAAGCGCG
CCGTCTCATCCAGGGGACGCAAACGTTTCTGGGCGAAAGCCTGGGGTCAG
ACGGGGGGCGGCGGCAGGCCTTATTTCCCTTTATCCACCCTCTTTGGACC
TCCACGGTGCATGTGGACAGACAGGCATACGTGCTCAGCGCAGGTATTCT
GGGGATAAGCCTCTGGCTCGTTGTTTTCCTCCTGTGCGAGCTCTACGGCT
CTTGTTGCATCCTGCGCCGGGCGCGGGCCCTCGTAGGCATGGGCCGCCGC
GTCTCCTACCAGGGACTTCTCCCTCCGGGGCGCACCCGCAGCACCGACAG
CCTGGCCAGCCTGGGGAGCCGAAGTACGGCCTGGAAAAGGGGCTTGGACT
GGGACCGCGACGTGCACCTGAGCACCAAGTTCCATTTCGTCTCGTTCTGG
CAGCTGTTGCTGCTGACGGGCACCCTAGTGTCGGGAATCGAGTCGCTTTG
TGCCTTGCGCCACGTGGGGCCGCTTGCCCCTCCCATGGTGACGGACGTGC
ACGCAGCTTGGCGAGGGCTGGGCGCTGCCTGTCTGTGGGTGTATGCCTGT
CGGTATATGCACCACTCTGACAGACTCTACGCCATCGTCCTGGTCATCAA
CCACAGTGTCCCCCGCGTCGCCCGGATGCTCGTCCAGGTCGTGCCGCTCT
TTGTCGGCTACGCATGGTTTGGGGTCATGTTCTTCGCCCCTTACTTGCCT
CGCTTTGGCTCCTTCTCTCAAGCTTTCGCCACCCTTTTTTGTGTGTGGAA
CGGGGACGGCTTGATGGACGTGCAGGGGGAACTCGGCACCTGGTTTCCCG
GTCTGGGTTTCGCCTACCTGTCGGTGTTTGTCGGGGTTTTTTCCTACGTG
GTATTGAACATCTTGTTGGTGGTGGTGCAGCAGACTTTGGTGTATGTCCA
AGTCCTAGGCCGGGGGAAGCGGCGGCTGCACCGGTTGCTTCTACGACGGG
AGGGGGGGAAGAAGCCCGGTGGGGAAGGGAGGGAAGGAGGGGATGGGGAC
AGGGACGTGGTGGAGGAAGGAGCTTCCAACAAAGGGAGACAAAGTGGTGG
GAGGCACCAGGGACTGGACGAAGAGAAGGACTTTTTGGCCCTGCTGGATT
TGACGCACGGGCAGGATGCGACCAGGGCATTTTTTGAGGGGGAAAGCGGA
GGGAGGGGCGGGGGCGGAGAGAGGAGGGAGAACAAGGGGGAGCGAGGAAC
CATGTGGCCCGAGAAAGGGAGGGCAGACGGGTGCAAAGGACTGCGGCAGC
GGCGTGGAGGCCGAGGGGAAAGGGAAGGGGGAAAGAGAACGCCGGCCGTG
AACTGGGATCAACATGATGCCGGCAGTGGGGTGTAAATGCATCCTCCCTA
CAAAAAGATCCCCATCCGCTTGGACCATGGAGGCAACGTCCTCCTTTCCC
TCTGCGAGCTCACGCCGATGGAGCGCTGGCAAGGTTATGGTGTCTTTCCA
ACCAAAGTGGTCTTGCACGTGATCCTCTTGGTGCTTACCACAGCCGCCGT
ATTACACGACGCCGCACGCTGGAGCCCTTACCGTCTCGCAAGTCAAGCAT
CTGCGTGTCATTTTTTCGCTCCCGCTCCCTGTGCAGCCAAGATGTGTGGG
GCTTCTCCTACTGTAAGCTACGGTTGGGACAATTGGAGCAACTGCTTCAT
ATTCTCGACAGATGAACTGTATGCAGCGGTGCGGGGGGTAGTTTACAATT
ATTTCCACATCGAAGACATTGCGCTGGCGAATTATGGAGTAATGAGGATG
GCGGCGGGTGAAGTGGACGATTCTGCGGGCACATCGGCAATCAACGTGGA
CGGTCACAACGCCCCACGACGCACGAATCATTCGGAGAAACTGATTCCTC
GCCCACCTTTGCTGACGGCATCACTGCAAAGCAGCACCAATGATTCGGAG
CACCACTACCATCGTCAGTACCCGCTGACCCTTGCGGACCTGGGGCCCTT
GGATACACGCAAGAATACTCCCGCAGCTGTCGAGGACTTCGTCGCCCGCC
TGCTTACCTTGGCCATAGACCTGGAGCTCACGGACGAACTGGCGGAAGAC
GGCGCCAATGTCTGCTACCTCTGGCATGTCCGGGTCCTGTATGACATTCG
GAACAAAGCAGAAATCGCAGTCAGTCAGAAGACTTACATTCGGGCCTTTT
GCGATGCTTTACCCAGAAAAGGAGGCGACCAGCCCGGGCGTATGGACGGA
AATCGACAGGTCTTTCAAGCGCGCCGTCTCATCCAGGGGACGCAAACGTT
TCTGGGCGAAAGCCTGGGGTCAGACGGGGGGCGGCGGCAGGCCTTATTTC
CCTTTATCCACCCTCTTTGGACCTCCACGGTGCATGTGGACAGACAGGCA
TACGTGCTCAGCGCAGGTATTCTGGGGATAAGCCTCTGGCTCGTTGTTTT
CCTCCTGTGCGAGCTCTACGGCTCTTGTTGCATCCTGCGCCGGGCGCGGG
CCCTCGTAGGCATGGGCCGCCGCGTCTCCTACCAGGGACTTCTCCCTCCG
GGGCGCACCCGCAGCACCGACAGCCTGGCCAGCCTGGGGAGCCGAAGTAC
GGCCTGGAAAAGGGGCTTGGACTGGGACCGCGACGTGCACCTGAGCACCA
AGTTCCATTTCGTCTCGTTCTGGCAGCTGTTGCTGCTGACGGGCACCCTA
GTGTCGGGAATCGAGTCGCTTTGTGCCTTGCGCCACGTGGGGCCGCTTGC
CCCTCCCATGGTGACGGACGTGCACGCAGCTTGGCGAGGGCTGGGCGCTG
CCTGTCTGTGGGTGTATGCCTGTCGGTATATGCACCACTCTGACAG back to top
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