rna2216, rna2216 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2216
Unique Name	rna2216
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2126
Alignment location	CM002458.1:1184267..1185787 +

Link to JBrowse

Properties


Property Name	Value
Product	Golgi apparatus membrane protein TVP15
Orig transcript id	gnl\|cribi\|Naga_100190g3.3124.mrna
Orig protein id	gnl\|cribi\|Naga_100190g3.3124
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1184267..1185787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100190g3	gene2119	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2216	rna2216-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28473.1	cds2208	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1184267..1185787+
coding sequence from alignment at CM002458.1:1184267..1185787+

mRNA sequence

>rna2216 ID=rna2216|Name=rna2216|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp
GTCTTGACATCGCTGGCATACAACAAGCCTTTTTCAATGCTGCCAGGTAC
AGATTGGCTTTGCATAATACATCCGTTAATGTAGCCTCTCTTATCAACAT
TTACAACCTTGGTCTTTCGTACACACAGGCTTTGGTCGCTGCATGTTTCC
GTTGCTGCCTCGATCTGCAGCACTCACAACCCTGGTCTGTCATATTTTGG
TCCGCGCCCGTGCTGGATTCCCCCACAGCAGCGCGTCGACTGTTACAGCC
TTCGTACGTCCTTTTCTCACGCCAATTCTAGCCACGTCAGGTACTGGACA
GCATTGGCTGCATCGTGCCGTGCCACGCGCTGCAGTCGCCTCCACCGTCA
CTATGACCAACGGAGAGGGAACGTCCTCGGACACCTCAGTGAAAAAGTGC
GGTCTGGTCTGGTACAAATGCACGGATTTGCGCACCCTCGACCATGAACC
ACTGTCTTTGGCGCACGCCGAAAATTCCCACGTCGCCCATCTCTTCTGTT
TTGACCCTCGATGGTTTGGAGATGCAGGGGGGCCGTCGGCGCCCGGGACC
CTCAAGACGGGGCCGCTCCGCGCACGTTTTCTGCTCGAAGCCGTGGAGGA
TTTGAAGACACGGTTGGGGGGAAATATGATCGTGAAGCTGGGCAAACCCG
AAACGGAAGTGCCGCGCTTGGCCAAGGCGTTGAAAGTGGATTTTGTATAC
GCCCACCGAGAGGTCACGTCCGAGGAAGTGGCAGTGGTCAAGGGCGTGAA
GGAGGGCCTGTCCAAGGCGACTGAGGGGAAAAGCCAGTTTCGAGAATTGT
GGGGCAATTATCTTTACCATATCGACGACGTACCTTTCCAGAACCTCAAG
CAAGACATGCCCTCGATCTTTACCCAATTTCGCAAGGCAGTGGAATCCAA
AGCGCGGGTTCGAAAATACCTGCCCAAGCCCCCTTCTCTGAAGCCCGCCC
CCCCACGCAGCACGGTTGAGGAGAATACTAACGCCTTGTTGTCTCCCCTC
ACCCTGGAAGCTCTGGGTTTCACCCGGGAGGAGGACCTGGGCCCTGTCCT
AAGTTACGCCAGCGACACTCGCGTGGACCCGTCTTCGGTCCTCATGTTTA
AGGGGGGGGAGACAGCAGGCCTGGCGCGTCTGCAGGAGTATTTTTGGGAC
AAGGACCTGCTCCAAAAATACAAGGAGACGCGCAATGGTATGTTGGGGCC
GGATTACAGCAGCAAATTCAGCCCCTGGCTAGCCACTGGGAGCATATCTC
CCCGGGTTATCTTCGCAGAAATTCGGAAATACGAGCGGGAGCGCGTGGAG
AACGACAGCACGTATTGGCTGTTTTTCGAACTGATATGGCGCGATTTTTT
CCGCTTCTCCGCCATCTCCTTCGGCAACGCTTTTTTCAAACTGGGTGGTC
CGCAAGGAAACCCTCGCAAATACCCATGGAAGCGGGACGGGGCTTTGTAC
CATGCGTGGAAAGAGGGCCTCACGGGGTATCCGTTGGTGGACGCGAACAT
GCGTGAGTTGAAAACCACGGGGTTCATGTCCAACCGGGGGCGGCAACTTG
TCGCCTCTTTTTTGACCCGGGATATGGGCTTGGAATGGCGCCTGGGTGCG
TATTGGTTCGAAGAGGTGCTTTTGGACTACGATCCGTGCAGCAATTACGG
GAATTGGTGTTATGCGGCGGGCGTGGGGAGTGATCCGCGGGAAGATCGAT
ATTTCTCGCTGCCCAAGCAGGGGGCTACGTACGACCCTGAGGCAAGGTAC
ATCAAACATTGGTGTCCAGAGCTGCGTCATATCCCTGCCGATATTCTGCT
CAATCCTGCCCGCTTTGATGGGCCGGTACGGGCAAAATTTGCTGTAGGTG
AGGAGGTATACCCGCGGCAGATTGTCCCGTTGAAATTTGGAGGGGGCGGG
GGAGGGGGGATTAAAGGGTCGGGAGGCAAAAGCGGCAGTAAACGAGGAGG
TGGTGGAGGTGGAAAGGGACGCGCACCGTTCAAGGGCCCACGACGACCGA
CCAATCGGCTGCAAAGTGATTACTTATGAAGGGCATTTATGTGCTTTGTC
GACAGGCGCCGGCGGGTAGGAAAGAAGGATATGGATTAAGCAAACGCAAT
GAAAGCAGAAACAACACCCCTTTCTT

protein sequence of rna2216

>rna2216-protein ID=rna2216-protein|Name=rna2216|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAA
AQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLR
RQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVY
GIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHE
ARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQA
ELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGT
VGCTERGAGRGEGGLD

mRNA from alignment at CM002458.1:1184267..1185787+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2216 ID=rna2216|Name=rna2216|organism=Nannochloropsis gaditana|type=mRNA|length=1521bp|location=Sequence derived from alignment at CM002458.1:1184267..1185787+ (Nannochloropsis gaditana)
CCGTGCCTGCTGTGATATGCCTCTTTAATTTTTGCAGTAGACATGAAGCC
GGCTACAGTCCTCGTTTTTTAGCTTACACAgattcctttccttttcaacC
TACCCATCTTTGCAAATTTGATGCGAACCATCACCACAGCAGCACTGTTG
GGCCACGCCATGCCTGACACTGATACAAACCACTACCAGCACCAACAATA
CCATAGAGGAACGAATCCGGAGCCATCCTGGATGCACGAACAAGCCGCCG
GAGAGGCAGCTGGAGCGGCTGCGCAGCCTTACCCCTCCGCCGCTGCAACA
TCCCATACACACCAGAACCAGCACGAGACAACCCCTTTGCGGGGTAGTGC
GCCGTCATCCGTTGCCTCCTCAGCGGGCCGACCAAGCAAGCATGGAGCCA
TGTATCGCCCTTATTTGCGTCGGCAGGACATCCGTCGGGGCTGTTGCTTG
AGCATCTTTCTGGCCATAAACGCTGTTTGTGTGCTGAGCGCCCTCTCAGT
GGCTGTGGCAGAGATTCTGTCCATTGTATATCATGGTCTGTCGCCTTTGG
GAATAGCGATTCGTGTGTACGGGATCGTCTTCTCGATTGGAGTGGTTTTC
ACGGAGTTGGGGTGGACACAGGTAGGGGAACAAGTAGATGGGCAGGCAGA
TTCTCAGGAAAAGGGGCCGAAGCGTTGGATTTGTTGCCAGGATGAATCGC
TTTATCATTCGCCATCATACCCACATCCATATAAATCTATGTCTCTGCAT
GCCGCCTACGCGCGGGGCTACAGGCGGTCCGCGACACCTGGCTTTTACAG
AACTGGATCAGCCGGGGGGTGAGtgcaggaaaaaggaaagtgTAGTCGTG
ATTGCCTCTGAAGCTAATTGCACTAACATGGCCTAAAGCACTTTTACGGT
CTGCCATTCTTCCATAAAATGTCACGCGCCCGCTCAATTATTTACGATCG
ACCTTCTGTTTCTCCCTGTAGGCCATCTATACCTTCGTAGGCCTGCTCTC
CATCAAACAAGAAGTAGAGCACGAGGCACGTATCAACATCGTCAACGTCT
TCATCTACTGCGCCGGTCTCGGGTTGATAGGACTCGGTGTCTTGTACTTT
GTTATGGGCGTCTTCTGCTTGAAAGGAGTACGGGACCGGCGGGCTGCGGA
TTACACCATCCTTAAGTCGCAGGCGGAGTTGGAAGAGGCACTGCGGAGGC
ACGGCGATGTGGGAAAAGATGATTTGGAGGATGCGCCGTCAACCTAccag
gcagggggggggggggggttcgAGAGTGGTGGTCTGAGGGGGctgggggg
gagaagacagagGGTGGTTGGGACGGTGGGATGTAcagagaggggagcgg
gaaggggggaagggggcctAGATtaggaggagacggtgggCTATCGGCAT
TGTCAATAGCGACATGGGCGATCGGAAGGCATGGAGGGATGTTTTGGGGT
CGAGCACATGGTGCAAGGAAAGAACACAAACAGCAGGAAAAGTCGACGGG
AGACTGGAGGCTCGTTCTGAC

Coding sequence (CDS) from alignment at CM002458.1:1184267..1185787+

>rna2216 ID=rna2216|Name=rna2216|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at CM002458.1:1184267..1185787+ (Nannochloropsis gaditana)
ATGCGAACCATCACCACAGCAGCACTGTTGGGCCACGCCATGCCTGACAC
TGATACAAACCACTACCAGCACCAACAATACCATAGAGGAACGAATCCGG
AGCCATCCTGGATGCACGAACAAGCCGCCGGAGAGGCAGCTGGAGCGGCT
GCGCAGCCTTACCCCTCCGCCGCTGCAACATCCCATACACACCAGAACCA
GCACGAGACAACCCCTTTGCGGGGTAGTGCGCCGTCATCCGTTGCCTCCT
CAGCGGGCCGACCAAGCAAGCATGGAGCCATGTATCGCCCTTATTTGCGT
CGGCAGGACATCCGTCGGGGCTGTTGCTTGAGCATCTTTCTGGCCATAAA
CGCTGTTTGTGTGCTGAGCGCCCTCTCAGTGGCTGTGGCAGAGATTCTGT
CCATTGTATATCATGGTCTGTCGCCTTTGGGAATAGCGATTCGTGTGTAC
GGGATCGTCTTCTCGATTGGAGTGGTTTTCACGGAGTTGGGGTGGACACA
GGCGGTCCGCGACACCTGGCTTTTACAGAACTGGATCAGCCGGGGGGCCA
TCTATACCTTCGTAGGCCTGCTCTCCATCAAACAAGAAGTAGAGCACGAG
GCACGTATCAACATCGTCAACGTCTTCATCTACTGCGCCGGTCTCGGGTT
GATAGGACTCGGTGTCTTGTACTTTGTTATGGGCGTCTTCTGCTTGAAAG
GAGTACGGGACCGGCGGGCTGCGGATTACACCATCCTTAAGTCGCAGGCG
GAGTTGGAAGAGGCACTGCGGAGGCACGGCGATGTGGGAAAAGATGATTT
GGAGGATGCGCCGTCAACCTAccaggcagggggggggggggggttcgAGA
GTGGTGGTCTGAGGGGGctgggggggagaagacagagGGTGGTTGGGACG
GTGGGATGTAcagagaggggagcgggaaggggggaagggggcctAGATta
gATGCGAACCATCACCACAGCAGCACTGTTGGGCCACGCCATGCCTGACA
CTGATACAAACCACTACCAGCACCAACAATACCATAGAGGAACGAATCCG
GAGCCATCCTGGATGCACGAACAAGCCGCCGGAGAGGCAGCTGGAGCGGC
TGCGCAGCCTTACCCCTCCGCCGCTGCAACATCCCATACACACCAGAACC
AGCACGAGACAACCCCTTTGCGGGGTAGTGCGCCGTCATCCGTTGCCTCC
TCAGCGGGCCGACCAAGCAAGCATGGAGCCATGTATCGCCCTTATTTGCG
TCGGCAGGACATCCGTCGGGGCTGTTGCTTGAGCATCTTTCTGGCCATAA
ACGCTGTTTGTGTGCTGAGCGCCCTCTCAGTGGCTGTGGCAGAGATTCTG
TCCATTGTATATCATGGTCTGTCGCCTTTGGGAATAGCGATTCGTGTGTA
CGGGATCGTCTTCTCGATTGGAGTGGTTTTCACGGAGTTGGGGTGGACAC
AGGCGGTCCGCGACACCTGGCTTTTACAGAACTGGATCAGCCGGGGGGCC
ATCTATACCTTCGTAGGCCTGCTCTCCATCAAACAAGAAGTAGAGCACGA
GGCACGTATCAACATCGTCAACGTCTTCATCTACTGCGCCGGTCTCGGGT
TGATAGGACTCGGTGTCTTGTACTTTGTTATGGGCGTCTTCTGCTTGAAA
GGAGTACGGGACCGGCGGGCTGCGGATTACACCATCCTTAAGTCGCAGGC
GGAGTTGGAAGAGGCACTGCGGAGGCACGGCGATGTGGGAAAAGATGATT
TGGAGGATGCGCCGTCAACCTAccaggcagggggggggggggggttcgAG
AGTGGTGGTCTGAGGGGGctgggggggagaagacagagGGTGGTTGGGAC
GGTGGGATGTAcagagaggggagcgggaaggggggaagggggcctAGATt
agATGCGAACCATCACCACAGCAGCACTGTTGGGCCACGCCATGCCTGAC
ACTGATACAAACCACTACCAGCACCAACAATACCATAGAGGAACGAATCC
GGAGCCATCCTGGATGCACGAACAAGCCGCCGGAGAGGCAGCTGGAGCGG
CTGCGCAGCCTTACCCCTCCGCCGCTGCAACATCCCATACACACCAGAAC
CAGCACGAGACAACCCCTTTGCGGGGTAGTGCGCCGTCATCCGTTGCCTC
CTCAGCGGGCCGACCAAGCAAGCATGGAGCCATGTATCGCCCTTATTTGC
GTCGGCAGGACATCCGTCGGGGCTGTTGCTTGAGCATCTTTCTGGCCATA
AACGCTGTTTGTGTGCTGAGCGCCCTCTCAGTGGCTGTGGCAGAGATTCT
GTCCATTGTATATCATGGTCTGTCGCCTTTGGGAATAGCGATTCGTGTGT
ACGGGATCGTCTTCTCGATTGGAGTGGTTTTCACGGAGTTGGGGTGGACA
CAGGCGGTCCGCGACACCTGGCTTTTACAGAACTGGATCAGCCGGGGGGC
CATCTATACCTTCGTAGGCCTGCTCTCCATCAAACAAGAAGTAGAGCACG
AGGCACGTATCAACATCGTCAACGTCTTCATCTACTGCGCCGGTCTCGGG
TTGATAGGACTCGGTGTCTTGTACTTTGTTATGGGCGTCTTCTGCTTGAA
AGGAGTACGGGACCGGCGGGCTGCGGATTACACCATCCTTAAGTCGCAGG
CGGAGTTGGAAGAGGCACTGCGGAGGCACGGCGATGTGGGAAAAGATGAT
TTGGAGGATGCGCCGTCAACCTAccaggcagggggggggggggggttcgA
GAGTGGTGGTCTGAGGGGGctgggggggagaagacagagGGTGGTTGGGA
CGGTGGGATGTAcagagaggggagcgggaaggggggaagggggcctAGAT
tag

Synonyms

Publications