EWM28473.1, cds2208 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|585110883|gb|EWM28473.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query: 1 MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD 316
MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD
Sbjct: 1 MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD 316
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|299472398|emb|CBN77586.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.553 bits (301), Expect = 1.091e-29 Identity = 61/161 (37.89%), Postives = 104/161 (64.60%), Query Frame = 0
Query: 102 QDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYH-GLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGD 261
+ +RRGC L L +NA+ V++AL V VA+ + + YH LSP +A+R Y I+F + ++ EL WT VR+ ++L +WI RG +Y+FVG+L +++E E + ++I ++G+G LYF++G+ C+K +RD++ A + L + AE++ A+RR D
Sbjct: 8 RTVRRGCLLDSLLLLNAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDHD 168
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210511651|dbj|GAX29465.1| (hypothetical protein FisN_16Hh093 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 1.584e-13 Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 0
Query: 105 RRGCCLSIFLAINAVCVLSALSVAVAEIL-------SIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSI----KQEVEH---EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEAL 256
RR C A+ + +LS+ ++AV+ +L V+H + +R+Y + F I ++ TEL V T+ +NW+ RG +Y+F+GL+ + EVE E R IV++ + A + LGV+Y +MG CL+ V +R ADY +A LEE++
Sbjct: 47 RRSC------ALRSFKILSSFAIAVSAVLLGAQIAAMAVFHFFFMPNV-LRLYIVAFCIILILTELRMENLVPTTY--ENWVYRGFLYSFIGLIGVVMAEANEVEERTLETRQMIVHLVMLGASYAMFALGVIYMLMGFCCLRDVLERMRADYDADVDRASLEESI 203
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1072227589|gb|OEU12328.1| (hypothetical protein FRACYDRAFT_244588 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.4925 bits (197), Expect = 1.844e-13 Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 0
Query: 78 PSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLG---IAIRVYGIVFSIGVVFTELGW-TQAVRDTWLLQNWISRGAIYTFVGLLSIKQ----EVEHEARINIVNVFIY-----CAGLGLIGLGVLYFVMGVFCLKGVRDR 238
P +S AG S + R R + +F I +L+ L++ +++L I++ LS +A+++Y +F+I + E+ + +T L +++RG +YTF GL+ ++ +++ EA +++N + + + LI LG LYF+MG+FCL+ +R++
Sbjct: 154 PDPTSSDAGDYSTVITYNQTSGRPDKPNRDWPVKVFFVIQTYALLTCLTLLNSQLLPIIFIPLSKFDKAYLALKIYMCIFTIFFMIVEIDRPIPCINNTIFLVTYVTRGFVYTFFGLICFEEAFIGKLQEEASTSVLNFSWFAIANRVSAIALISLGALYFLMGIFCLQKIRNK 327
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|219112119|ref|XP_002177811.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410696|gb|EEC50625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 78.1814 bits (191), Expect = 2.711e-13 Identity = 44/169 (26.04%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 105 RRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVN------VFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQA-ELEEALRRHGDVGKDD 266
RR ++ + ++ V +LSA+++ V +++ +V+ + P+ +RVY I + + EL WT+ R++ + + WISRG Y FVG+L +++ AR + ++ ++ G +YF MGV CL+ +R D+ + +A + + R+ D D
Sbjct: 65 RRKFFHTLVVLVSCVTILSAVNMGVGQLVGMVFEEVGPVQYVMRVYVIALCLLAILVELEWTKFARESAIFRIWISRGLFYAFVGVLGLEENDTSSARNQEIAHSSASLKYVKAVAWIMVVCGAVYFFMGVLCLQLFYNRLRKDFQERRERAGHIRDTAERYMDQPAAD 233
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|553178763|ref|XP_005852601.1| (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|422295933|gb|EKU23232.1| hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|585101812|gb|EWM21558.1| Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 75.8702 bits (185), Expect = 7.980e-13 Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = 0
Query: 81 VASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPL-GIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVG 263
+ S A PS P R +R L IF IN + +++A+ A+AE+LS++Y L G +R+Y + F + +V +E+ W++ VRD+ + +W RGA FV L + + + + FI A + L+ +G LY MG+ +K RD + A Y +++ AE+ +AL+ +
Sbjct: 1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLA 184
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210514785|dbj|GAX26264.1| (hypothetical protein FisN_16Lh093 [Fistulifera solaris]) HSP 1 Score: 75.0998 bits (183), Expect = 1.513e-12 Identity = 52/165 (31.52%), Postives = 86/165 (52.12%), Query Frame = 0
Query: 105 RRGCCLSIFLAINAVCVLSALSVAVAEIL-------SIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSI----KQEVEH---EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEA 255
RR C A+ + +LS++++ V+ +L V+H L + +R+Y + F I ++ TEL V T+ NW+ RG +Y+F+GL+ + EVE E R IV++ + A + LGV+Y MG+ CL+ + +R ADY +A LEE+
Sbjct: 36 RRSC------ALRSFTILSSIAIVVSAVLLGAQMAAMAVFHFLFMPNV-LRLYIVAFCIILILTELRIKALVPTTY--DNWVYRGFLYSFIGLIGVVMAEANEVEERSLETRQMIVHLIMLGASYAMFALGVIYMSMGLCCLRDLLERMRADYDADVDRASLEES 191
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|219124260|ref|XP_002182426.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406387|gb|EEC46327.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 73.1738 bits (178), Expect = 2.687e-11 Identity = 44/162 (27.16%), Postives = 85/162 (52.47%), Query Frame = 0
Query: 96 RPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSP-------LGIAIRVYGIVFSIGVVFTELGW-TQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-------EVEH----EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDR 238
+P++ RQ+ CL +F + V V++AL + +++ + Y S L +A+++Y F + E GW +R + LLQ +ISRG +Y+F+GL+ +++ ++ H E ++ +F+ + + G+LY ++G+ C+K VRDR
Sbjct: 87 KPHIPRQN----ACLWLFHFLEGVTVIAALCLLATQVIPLCYLPASEIPAKIGILSLALKIYISAFCVLFCLVEAGWPIPWIRSSPLLQVYISRGFLYSFLGLICVEESTSERIKDIVHKTADELHVSWAAIFMQISSWCFLATGMLYMLLGLCCMKRVRDR 244
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210519831|dbj|GAX21260.1| (hypothetical protein FisN_1Lh089 [Fistulifera solaris]) HSP 1 Score: 71.633 bits (174), Expect = 3.457e-11 Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = 0
Query: 116 INAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-EVEHEARINIVNV-----FIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTI-LKSQAELEEALRRHGD 261
++ + LSAL++ + +I+ + P+ +R Y I+ + + E WT+ R++++L+ WI+RG Y F+G+L +Q + H VN ++ ++ GVLY ++G+ CL+ +R DY L A + EA R+ D
Sbjct: 48 VSGLAALSALNMCIGQIVGYRFQQEGPVQYVMRFYVIILCVLAILVEFEWTKFARESFILRVWITRGLFYIFIGVLGFEQNDTSHAKNSESVNFQLSMHYVTATAWIMVAAGVLYSLLGMCCLQVYFNRLRIDYEQRLDRAAHIREAGERYFD 200
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210529018|dbj|GAX12164.1| (hypothetical protein FisN_1Hh089 [Fistulifera solaris]) HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-11 Identity = 40/153 (26.14%), Postives = 80/153 (52.29%), Query Frame = 0
Query: 116 INAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-EVEHEARINIVNV-----FIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTI-LKSQAELEEALRRHGD 261
++ V LSAL++ + +++ + P+ +R Y I+ + + E WT+ R++++L+ WI+RG Y F+G+L +Q + H + VN ++ ++ +GVLY ++G+ CL+ +R +Y L+ + EA R+ D
Sbjct: 48 LSGVAALSALNMCIGQLVGYRFQQEGPVQYVMRFYVIILCVLAILVEFEWTKFARESFILRVWITRGLFYIFIGVLGFEQNDTSHAKNSDSVNFQLSMHYVTATAWIMVAVGVLYSLLGMCCLQVYFNRLQTEYEQRLERAVHIREAGERYFD 200 The following BLAST results are available for this feature:
BLAST of EWM28473.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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