EWM28473.1, cds2208 (CDS) Nannochloropsis gaditana

Overview
NameEWM28473.1
Unique Namecds2208
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1184387..1184887 +
Alignment locationCM002458.1:1185040..1185084 +
Alignment locationCM002458.1:1185238..1185642 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28473.1
ProductGolgi apparatus membrane protein TVP15
Orig transcript idgnl|cribi|Naga_100190g3.3124.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1184387..1184887 +
CM002458.1supercontigCM002458.1:1185040..1185084 +
CM002458.1supercontigCM002458.1:1185238..1185642 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Homology
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|585110883|gb|EWM28473.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD 316
            MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD
Sbjct:    1 MRTITTAALLGHAMPDTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSAAATSHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGFESGGLRGLGGRRQRVVGTVGCTERGAGRGEGGLD 316          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|299472398|emb|CBN77586.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-29
Identity = 61/161 (37.89%), Postives = 104/161 (64.60%), Query Frame = 0
Query:  102 QDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYH-GLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGD 261
            + +RRGC L   L +NA+ V++AL V VA+ + + YH  LSP  +A+R Y I+F + ++  EL WT  VR+ ++L +WI RG +Y+FVG+L +++E E    +    ++I      ++G+G LYF++G+ C+K +RD++ A +  L + AE++ A+RR  D
Sbjct:    8 RTVRRGCLLDSLLLLNAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDHD 168          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210511651|dbj|GAX29465.1| (hypothetical protein FisN_16Hh093 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 1.584e-13
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 0
Query:  105 RRGCCLSIFLAINAVCVLSALSVAVAEIL-------SIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSI----KQEVEH---EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEAL 256
            RR C      A+ +  +LS+ ++AV+ +L         V+H      + +R+Y + F I ++ TEL     V  T+  +NW+ RG +Y+F+GL+ +      EVE    E R  IV++ +  A   +  LGV+Y +MG  CL+ V +R  ADY     +A LEE++
Sbjct:   47 RRSC------ALRSFKILSSFAIAVSAVLLGAQIAAMAVFHFFFMPNV-LRLYIVAFCIILILTELRMENLVPTTY--ENWVYRGFLYSFIGLIGVVMAEANEVEERTLETRQMIVHLVMLGASYAMFALGVIYMLMGFCCLRDVLERMRADYDADVDRASLEESI 203          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1072227589|gb|OEU12328.1| (hypothetical protein FRACYDRAFT_244588 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.4925 bits (197), Expect = 1.844e-13
Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 0
Query:   78 PSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLG---IAIRVYGIVFSIGVVFTELGW-TQAVRDTWLLQNWISRGAIYTFVGLLSIKQ----EVEHEARINIVNVFIY-----CAGLGLIGLGVLYFVMGVFCLKGVRDR 238
            P   +S AG  S      +   R     R   + +F  I    +L+ L++  +++L I++  LS      +A+++Y  +F+I  +  E+      + +T  L  +++RG +YTF GL+  ++    +++ EA  +++N   +      + + LI LG LYF+MG+FCL+ +R++
Sbjct:  154 PDPTSSDAGDYSTVITYNQTSGRPDKPNRDWPVKVFFVIQTYALLTCLTLLNSQLLPIIFIPLSKFDKAYLALKIYMCIFTIFFMIVEIDRPIPCINNTIFLVTYVTRGFVYTFFGLICFEEAFIGKLQEEASTSVLNFSWFAIANRVSAIALISLGALYFLMGIFCLQKIRNK 327          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|219112119|ref|XP_002177811.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410696|gb|EEC50625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 78.1814 bits (191), Expect = 2.711e-13
Identity = 44/169 (26.04%), Postives = 86/169 (50.89%), Query Frame = 0
Query:  105 RRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVN------VFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQA-ELEEALRRHGDVGKDD 266
            RR    ++ + ++ V +LSA+++ V +++ +V+  + P+   +RVY I   +  +  EL WT+  R++ + + WISRG  Y FVG+L +++     AR   +        ++      ++  G +YF MGV CL+   +R   D+   + +A  + +   R+ D    D
Sbjct:   65 RRKFFHTLVVLVSCVTILSAVNMGVGQLVGMVFEEVGPVQYVMRVYVIALCLLAILVELEWTKFARESAIFRIWISRGLFYAFVGVLGLEENDTSSARNQEIAHSSASLKYVKAVAWIMVVCGAVYFFMGVLCLQLFYNRLRKDFQERRERAGHIRDTAERYMDQPAAD 233          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|553178763|ref|XP_005852601.1| (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|422295933|gb|EKU23232.1| hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|585101812|gb|EWM21558.1| Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 75.8702 bits (185), Expect = 7.980e-13
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = 0
Query:   81 VASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPL-GIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVG 263
            + S A  PS       P   R  +R    L IF  IN + +++A+  A+AE+LS++Y     L G  +R+Y + F + +V +E+ W++ VRD+ +  +W  RGA   FV  L  + +   +    +   FI  A + L+ +G LY  MG+  +K  RD + A Y  +++ AE+ +AL+    + 
Sbjct:    1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLA 184          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210514785|dbj|GAX26264.1| (hypothetical protein FisN_16Lh093 [Fistulifera solaris])

HSP 1 Score: 75.0998 bits (183), Expect = 1.513e-12
Identity = 52/165 (31.52%), Postives = 86/165 (52.12%), Query Frame = 0
Query:  105 RRGCCLSIFLAINAVCVLSALSVAVAEIL-------SIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSI----KQEVEH---EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEA 255
            RR C      A+ +  +LS++++ V+ +L         V+H L    + +R+Y + F I ++ TEL     V  T+   NW+ RG +Y+F+GL+ +      EVE    E R  IV++ +  A   +  LGV+Y  MG+ CL+ + +R  ADY     +A LEE+
Sbjct:   36 RRSC------ALRSFTILSSIAIVVSAVLLGAQMAAMAVFHFLFMPNV-LRLYIVAFCIILILTELRIKALVPTTY--DNWVYRGFLYSFIGLIGVVMAEANEVEERSLETRQMIVHLIMLGASYAMFALGVIYMSMGLCCLRDLLERMRADYDADVDRASLEES 191          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|219124260|ref|XP_002182426.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406387|gb|EEC46327.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.1738 bits (178), Expect = 2.687e-11
Identity = 44/162 (27.16%), Postives = 85/162 (52.47%), Query Frame = 0
Query:   96 RPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSP-------LGIAIRVYGIVFSIGVVFTELGW-TQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-------EVEH----EARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDR 238
            +P++ RQ+     CL +F  +  V V++AL +   +++ + Y   S        L +A+++Y   F +     E GW    +R + LLQ +ISRG +Y+F+GL+ +++       ++ H    E  ++   +F+  +    +  G+LY ++G+ C+K VRDR
Sbjct:   87 KPHIPRQN----ACLWLFHFLEGVTVIAALCLLATQVIPLCYLPASEIPAKIGILSLALKIYISAFCVLFCLVEAGWPIPWIRSSPLLQVYISRGFLYSFLGLICVEESTSERIKDIVHKTADELHVSWAAIFMQISSWCFLATGMLYMLLGLCCMKRVRDR 244          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210519831|dbj|GAX21260.1| (hypothetical protein FisN_1Lh089 [Fistulifera solaris])

HSP 1 Score: 71.633 bits (174), Expect = 3.457e-11
Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = 0
Query:  116 INAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-EVEHEARINIVNV-----FIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTI-LKSQAELEEALRRHGD 261
            ++ +  LSAL++ + +I+   +    P+   +R Y I+  +  +  E  WT+  R++++L+ WI+RG  Y F+G+L  +Q +  H      VN      ++      ++  GVLY ++G+ CL+   +R   DY   L   A + EA  R+ D
Sbjct:   48 VSGLAALSALNMCIGQIVGYRFQQEGPVQYVMRFYVIILCVLAILVEFEWTKFARESFILRVWITRGLFYIFIGVLGFEQNDTSHAKNSESVNFQLSMHYVTATAWIMVAAGVLYSLLGMCCLQVYFNRLRIDYEQRLDRAAHIREAGERYFD 200          
BLAST of EWM28473.1 vs. NCBI_GenBank
Match: gi|1210529018|dbj|GAX12164.1| (hypothetical protein FisN_1Hh089 [Fistulifera solaris])

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-11
Identity = 40/153 (26.14%), Postives = 80/153 (52.29%), Query Frame = 0
Query:  116 INAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQ-EVEHEARINIVNV-----FIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTI-LKSQAELEEALRRHGD 261
            ++ V  LSAL++ + +++   +    P+   +R Y I+  +  +  E  WT+  R++++L+ WI+RG  Y F+G+L  +Q +  H    + VN      ++      ++ +GVLY ++G+ CL+   +R   +Y   L+    + EA  R+ D
Sbjct:   48 LSGVAALSALNMCIGQLVGYRFQQEGPVQYVMRFYVIILCVLAILVEFEWTKFARESFILRVWITRGLFYIFIGVLGFEQNDTSHAKNSDSVNFQLSMHYVTATAWIMVAVGVLYSLLGMCCLQVYFNRLQTEYEQRLERAVHIREAGERYFD 200          
The following BLAST results are available for this feature:
BLAST of EWM28473.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110883|gb|EWM28473.1|0.000e+0100.00Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
gi|299472398|emb|CBN77586.1|1.091e-2937.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210511651|dbj|GAX29465.1|1.584e-1331.93hypothetical protein FisN_16Hh093 [Fistulifera sol... [more]
gi|1072227589|gb|OEU12328.1|1.844e-1325.86hypothetical protein FRACYDRAFT_244588 [Fragilario... [more]
gi|219112119|ref|XP_002177811.1|2.711e-1326.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|553178763|ref|XP_005852601.1|7.980e-1329.89hypothetical protein NGA_0712000 [Nannochloropsis ... [more]
gi|1210514785|dbj|GAX26264.1|1.513e-1231.52hypothetical protein FisN_16Lh093 [Fistulifera sol... [more]
gi|219124260|ref|XP_002182426.1|2.687e-1127.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519831|dbj|GAX21260.1|3.457e-1127.45hypothetical protein FisN_1Lh089 [Fistulifera sola... [more]
gi|1210529018|dbj|GAX12164.1|4.129e-1126.14hypothetical protein FisN_1Hh089 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2216rna2216Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications