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Properties
| Property Name | Value |
|---|
| Product | transmembrane emp24 domain-containing protein 10 |
| Orig transcript id | gnl|cribi|Naga_100190g6.3121.mrna |
| Orig protein id | gnl|cribi|Naga_100190g6.3121 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1176689..1177841 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2213 ID=rna2213|Name=rna2213|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp
AGATAAATGCGTGCTTCTTCAGCACAGTCTTTGTCAAGCTTTTTGTGTGC
CAGAATTGTTTATATTCGAGCCTTTCAAAATTCTTTTCCCATTCCATCGC
CCGTTCCCGCTTTACCCAAAGGAAGGCAGGAGGTAAATTAGACCGCAACC
TGCCAAGACCAAGACAGTTGCCAATTACACATGCCACCCGGTGCTTGGGC
TCAAAAATCTTTTGAAACAGCAGAAATGGCAGAGGATGTCGCAGGCAAGC
GTCGAGAGTCGCATGCGGGTCCTACCACGGTGGCAATCGCCGTGCAACCC
AAAAAGAGACGGCGTCTCTCATCCCGCGTTGTCTATCATCAAGAGACATC
TGCCACAACCAATGGTTACACAAAATCGAGTATCCACACTGGGGGGTCAT
GTATGAACGTAGAAGATAAACGTTGCTCCCAAAGCAGTGGTCGCCGCTTG
GGCTCAAGGCTTGCTACGGGCCAATCCACCGCCCCCGCAACGTTTTGCAT
GCTACCCACTGACATCCAAGCACGTGTTCTCTACTCAGGCTATTTCAACT
CAGTCTATGTACTGACTAATTTGTCCTTGGTGAGCAAAGGCTGGCACGCG
ATGGCCTCGAAATGCTATCATGAGCTAGATTTGTCCCGGCTTCCGCACCT
GGATGACAACCACCTTTCGAGGATGGCCTCGCGCTTTCAGGGCGTGCACT
CCCTGGATCTCTCATTTTGTGACTCGGTGGGCGACTCCGTCACGATGGCA
CTCACACGTTGCAATACCACCCTGATTCGCATTAGCTTGCGGGGCTGTGG
CGTCTCGGATCAGGGGCTGCAGGAGATTTTCAGATTCACCCGTCTCGAGT
CCGTGGATGTATCCAAGCGCAAGCGGGATCAAAGCACTCTGTTGACCGAC
GACGGGCTGAGACCTCTGGCACATCTCAGGCACCTGCAAGAAGTGAACCT
AGCCTGGAACAGACTGATCACCGACGAGGGGGTGCGGATCCTACTCTCCC
CGGCCCCAGGCTCCAAACACCTCCGGGTCCTAGACCTGTCGTGCTGCGAG
CGCTTGACGGATGCCGCCTGCGAGGCCCTGGTAGGGCAGCCCTTGGAGGC
GTTATCGCTTTCAGGGTGTCCACAGATCACCGACCAGGCCCTTCGCATCC
TGTACGTGGACGGCTCTGGCAATGGCGACTCCTTTTTCTCCACTGGGCTG
CTCGAAATGCAGGCGTTCCCTCGCGACGTGAATGAGCGTGTCCATTGCGC
TGCAGTTTCCTACTCTTCTACCGCGTTACCTCAGACGGGAGACCGAGCGA
GGGTCGGCTCTCCGCAACCAGCCACAAGCCTTGTCTCCCTCTCATTAGCG
CACTGCCCGGCCTTAACCGACTTGAGCGTGGAAATTCTCCTCACCTTCTC
TCGCCTTCAGAGCTTGGACATGCGGGATTGCCGGGGACTGACCGAAAAAG
CCCGAAGCATGTTGCAAAAATGGCTCCCGGCGGCGATGGTGGCCTGCTCG
TGACCCCGGAGCAATGCACGGAGGGGGACAGGCCTCTGTCGAGCAGGGCC
AGAAGCTGCCTTTTAGGAGACCAAAAGACGTGGTCCCGAAAGCAGAACTT
GCAGGAGGCGGACCAAAAAGGCGCGGAAGGCACGCGGGCATGAAGGGTCC
GGTCATCGCAGGGGGATGTAAAAAGAGGGGCGTGGATAGGGCGGATCGGG
AGTCTGGTTGAAGGCCCATAATTTGGAGACCAGCATAATCGTAGATACCG
TAGAGGAATAGCATTAAGGGTGAAGAATCGTGCACATTTTCATGCATCAG
TCGTTGTATTTCCCGCTTATGTATCGATAGCACACAAGCGTCGAGTTTTT
GCGCACCCACACAAGCAAAAGCCAGAAATGCAAGCATGTCGCAGGTGGGA
GGCCGCGTGTAAGTTGATGCAGGGGCAATATTGACAAAAGCATCCACCAG
GTCATGGGCCATGCTTCTTAAAATATGTAATTCTTTTGTATCTTCCTGGT
CATCCTATCCATTTAAGTCTTGCCCCCTAGTCAGTGAGTGAGAAGTATTT
CACTCTCAACGTAATTCTATCTGATAGGCAAAGACATACAAATACCCATA
ATGAAAGCCTCACTATACATTCTCCGCG back to topprotein sequence of rna2213 >rna2213-protein ID=rna2213-protein|Name=rna2213|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLA
LLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVST
PDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKA
VQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETS
ESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL back to topmRNA from alignment at CM002458.1:1176689..1177841+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2213 ID=rna2213|Name=rna2213|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp|location=Sequence derived from alignment at CM002458.1:1176689..1177841+ (Nannochloropsis gaditana)
TggtcccctctttttcccctacGCTTCTTACGCCCTTCCCCACAGCCAAA
ACCTGTCATCGGAGACAATACGGTGGGGGTGCATGAGGCTTGTCGAAGGC
CGTGACATATTATCGTACCGGGTCATTTGGAGGCGCGACGAAGCATCATT
TAtgttctccctccactctcccAAGCCTTGTACCCATTACCAAGCCACAT
TCTACCACCCCCCCTCACAGCGGTGTTTCCCAAAAAAATCCGTACACCTA
CAGATCAGTCGGGATGGCACAGTCAGAACAGCAACCATCGTCCACTCCGC
ACACCAATTGCTTTCCATCCTCGCCCAAGCAGCACGCACACACGACGCtc
agcggaagaagaagaatgcTCCCATTTTCTGCGCCACTTTTGTTATTTTC
CTGCCAACTcgccctgctttcccttgtCAATGCAATTCAATTGGATCTAC
AACCTCACACGACACGGTGCGTTGCTGACGAATACGCCCCCGAGGAGGAT
TCGACGATCAAAGTGCGGGCTGTAGGACGTGTGCAAGACGGCATCCGCGG
TATGGTTTCAACACCCGACAACCGCCTCTTTTGGGATGGGTACTTGACAG
CCAAGATTGAGGACGTGAAAATTCCTGCAGATTATTTTGGACTGTACAAG
ATCTGCTTTTggaacggaggaagggaagtgCAACGGGTAGAAGTAGGACT
ATTGGATAAGGCCGTTCAGCTCCACAACGCGGAGACCGCCAAGACCAAAG
AGCATCTGCAGCCTCTGCAGCTTTTGTTTCGTCGCGCAGAGCTTACCGTG
GCCGGTGTAAGCAAGGAACTGGACAGTGTTCGACAACGTGAGGCGAGCCT
GCGGGAGACGAGTGAATCAACAAATCGACGCATCCAGTGGTTCTCGATTT
TCTCCATTGTGATCCTGTTGGCGGTCAGCATCTGGCAAGTGACTTTCCTC
AAATCTTTTTTCCGGGCCAAGAAGTTACTTTGAGGGTAAGGGCGGGGACt
gcaagagaaggaagcatGCTTGGAGGCCGGGGAGTCGGAGAGAGACGTGG
AATGAGGAAACCTGTTGGCGAGCAAGATATCCAACACTCAAACAACACGA
AACTTTCCGCTCGAAAACCTTGTCTCTCGCGCACATTTGGTTTTGATGTC
CCC back to topCoding sequence (CDS) from alignment at CM002458.1:1176689..1177841+ >rna2213 ID=rna2213|Name=rna2213|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002458.1:1176689..1177841+ (Nannochloropsis gaditana)
ATGGCACAGTCAGAACAGCAACCATCGTCCACTCCGCACACCAATTGCTT
TCCATCCTCGCCCAAGCAGCACGCACACACGACGCtcagcggaagaagaa
gaatgcTCCCATTTTCTGCGCCACTTTTGTTATTTTCCTGCCAACTcgcc
ctgctttcccttgtCAATGCAATTCAATTGGATCTACAACCTCACACGAC
ACGGTGCGTTGCTGACGAATACGCCCCCGAGGAGGATTCGACGATCAAAG
TGCGGGCTGTAGGACGTGTGCAAGACGGCATCCGCGGTATGGTTTCAACA
CCCGACAACCGCCTCTTTTGGGATGGGTACTTGACAGCCAAGATTGAGGA
CGTGAAAATTCCTGCAGATTATTTTGGACTGTACAAGATCTGCTTTTgga
acggaggaagggaagtgCAACGGGTAGAAGTAGGACTATTGGATAAGGCC
GTTCAGCTCCACAACGCGGAGACCGCCAAGACCAAAGAGCATCTGCAGCC
TCTGCAGCTTTTGTTTCGTCGCGCAGAGCTTACCGTGGCCGGTGTAAGCA
AGGAACTGGACAGTGTTCGACAACGTGAGGCGAGCCTGCGGGAGACGAGT
GAATCAACAAATCGACGCATCCAGTGGTTCTCGATTTTCTCCATTGTGAT
CCTGTTGGCGGTCAGCATCTGGCAAGTGACTTTCCTCAAATCTTTTTTCC
GGGCCAAGAAGTTACTTTGA back to top
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