EWM28470.1, cds2205 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|585110880|gb|EWM28470.1| (transmembrane emp24 domain-containing protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 496.123 bits (1276), Expect = 1.222e-177 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 Query: 1 MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239 MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL Sbjct: 1 MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|929761839|ref|XP_014155900.1| (hypothetical protein SARC_05711 [Sphaeroforma arctica JP610] >gi|906952455|gb|KNC81998.1| hypothetical protein SARC_05711 [Sphaeroforma arctica JP610]) HSP 1 Score: 108.227 bits (269), Expect = 1.658e-25 Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 0 Query: 45 FSCQLALLSLVNAIQLDLQPHTTRCVADEYAPE-------EDSTIKVRAVG-RVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFW---NGGREVQRVEVGL-LDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239 F C +A + V AI L P +TRC+ E + S ++ ++V ++D T +N A + AD G+Y+ CF + G E++ E+ + L V+ + + K E+L PL+L RR E ++K++ S++QREA++R T+ESTN R+ +FS+ S++ L+ ++IWQV +LKS+F++KKL+ Sbjct: 5 FLCIVAAFASVEAISFKLDPGSTRCLRQELTNGTFVKGDFKASVVEKQSVQIEIKDDYGRSAYTKEN---------ADSGKIAYVADNAGVYETCFTSKVDSGAEMKMHEITVDLKSGVEANEYDAVKEAENLAPLELAIRRMEELAESIAKDMGSMKQREANMRNTNESTNARVLYFSVVSMMCLVGLAIWQVYYLKSYFKSKKLI 202
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|301123013|ref|XP_002909233.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099995|gb|EEY58047.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 102.834 bits (255), Expect = 2.659e-23 Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 +NA+Q D++ +C++DE A + +G R Q G+ ++ P + D + +D+ AD G Y +CF N + RV +LD V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV + Sbjct: 18 LNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 196
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|675184801|ref|XP_008901285.1| (hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >gi|566030008|gb|ETI52919.1| hypothetical protein F443_04070 [Phytophthora parasitica P1569] >gi|567967608|gb|ETK92779.1| hypothetical protein L915_03952 [Phytophthora parasitica] >gi|567996073|gb|ETL46197.1| hypothetical protein L916_03896 [Phytophthora parasitica] >gi|568025322|gb|ETL99340.1| hypothetical protein L917_03810 [Phytophthora parasitica] >gi|568055743|gb|ETM52484.1| hypothetical protein L914_03914 [Phytophthora parasitica] >gi|568098485|gb|ETN13212.1| hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >gi|570333674|gb|ETO81622.1| hypothetical protein F444_04125 [Phytophthora parasitica P1976] >gi|570957749|gb|ETP22728.1| hypothetical protein F441_04049 [Phytophthora parasitica CJ01A1] >gi|570993339|gb|ETP50705.1| hypothetical protein F442_04054 [Phytophthora parasitica P10297] >gi|970645746|gb|KUF86124.1| Ankyrin repeat domain-containing protein 50 [Phytophthora nicotianae] >gi|970660720|gb|KUF98246.1| Transmembrane protein Tmp21 [Phytophthora nicotianae]) HSP 1 Score: 102.834 bits (255), Expect = 2.804e-23 Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 +NA+Q D++ +C++DE A + +G R Q G+ ++ P + D + +D+ AD G Y +CF N + RV +LD V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV + Sbjct: 18 LNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 196
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|695426151|ref|XP_009529350.1| (hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae] >gi|348675783|gb|EGZ15601.1| hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae]) HSP 1 Score: 101.679 bits (252), Expect = 4.794e-23 Identity = 58/182 (31.87%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 + A+Q D++ +C++DE A + +G R + G+ ++ P + D + +D+ AD G Y +CF NG + RV +LD V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV + Sbjct: 6 LGAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGKSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNGNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 184
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|669151670|ref|XP_008611397.1| (hypothetical protein SDRG_07346 [Saprolegnia diclina VS20] >gi|530736871|gb|EQC35113.1| hypothetical protein SDRG_07346 [Saprolegnia diclina VS20]) HSP 1 Score: 101.293 bits (251), Expect = 1.881e-22 Identity = 58/184 (31.52%), Postives = 99/184 (53.80%), Query Frame = 0 Query: 51 LLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNR-LFWDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 L++ ++A+Q D++ +C++DE A + +G V+ G+ ++ P + L D + ED+ A+ G Y CF+N V RV + V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV + Sbjct: 43 LMASISAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLIKDPMGKYLKEDSDIDLTSEDIHKYSFNAEAAGTYSTCFFNSNDFVTRVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMY 225
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|1214713635|gb|OWZ24520.1| (hypothetical protein PHMEG_000408 [Phytophthora megakarya]) HSP 1 Score: 100.138 bits (248), Expect = 2.679e-22 Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 ++A+Q D++ +C++DE A + +G R Q G+ ++ P + D + +D+ AD G + +CF N + RV +LD V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV + Sbjct: 20 IDAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNFAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 198
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|813132001|ref|XP_012197729.1| (hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65] >gi|641538006|gb|KDO31850.1| hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 99.7525 bits (247), Expect = 3.731e-22 Identity = 59/184 (32.07%), Postives = 97/184 (52.72%), Query Frame = 0 Query: 51 LLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNRLF---WDGYLTAK-IEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 +L+ + A+Q D++ +C++DE A + +G V+ G+ +V P + D LT+ I A+ G Y CF+N V RV + V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV + Sbjct: 13 VLASIGAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLVKDPMGKYLKEDSDIDLTSDDIHKYSFNAETAGTYSTCFFNSNDFVARVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNARVLWFSSFSIFVLLAMGLWQVMY 195
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|1173940688|gb|OQR90034.1| (hypothetical protein THRCLA_09458 [Thraustotheca clavata]) HSP 1 Score: 104.76 bits (260), Expect = 4.103e-22 Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 0 Query: 49 LALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNR-LFWDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQV 226 +ALL++V A+Q D++ +C++DE A + +G V+ G+ ++ P + L D + ED+ A+ G Y CF+N RV + V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV Sbjct: 3 IALLAVVQAVQFDIKRRAEKCLSDEIAAGSLVVVHYNILGNVKGRTGVSLLIKDPLGKYLKEDSDIDLTSEDIHKFSFNAETAGTYSTCFFNSNDVAMRVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQV 185
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|953503109|emb|CEG35877.1| (transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii]) HSP 1 Score: 100.138 bits (248), Expect = 4.380e-22 Identity = 58/181 (32.04%), Postives = 96/181 (53.04%), Query Frame = 0 Query: 56 NAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228 +A+Q D++ + +C++DE A + +G R Q G+ ++ P + D + +D+ AD G Y +CF N + RV +LD V+ + +EHL P++ R+ E TV + +E+ +R+REA++R T+ESTN R+ WFS FSI +LL + IWQV + Sbjct: 39 DAVQFDVRRRSEKCLSDEVAQGSLVVVHYDVIGGVRGQSGVALSITDPLRKFLKQDTNIDTSSDDIHKFSFTADTGGSYAVCFVNNNDKPMRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVEEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIAVLLGMGIWQVMY 216 The following BLAST results are available for this feature:
BLAST of EWM28470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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