EWM28470.1, cds2205 (CDS) Nannochloropsis gaditana

Overview
NameEWM28470.1
Unique Namecds2205
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1176952..1177671 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28470.1
Producttransmembrane emp24 domain-containing protein 10
Orig transcript idgnl|cribi|Naga_100190g6.3121.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1176952..1177671 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Homology
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|585110880|gb|EWM28470.1| (transmembrane emp24 domain-containing protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 496.123 bits (1276), Expect = 1.222e-177
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239
            MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL
Sbjct:    1 MAQSEQQPSSTPHTNCFPSSPKQHAHTTLSGRRRMLPFSAPLLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|929761839|ref|XP_014155900.1| (hypothetical protein SARC_05711 [Sphaeroforma arctica JP610] >gi|906952455|gb|KNC81998.1| hypothetical protein SARC_05711 [Sphaeroforma arctica JP610])

HSP 1 Score: 108.227 bits (269), Expect = 1.658e-25
Identity = 66/207 (31.88%), Postives = 113/207 (54.59%), Query Frame = 0
Query:   45 FSCQLALLSLVNAIQLDLQPHTTRCVADEYAPE-------EDSTIKVRAVG-RVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFW---NGGREVQRVEVGL-LDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239
            F C +A  + V AI   L P +TRC+  E           + S ++ ++V   ++D       T +N         A    +   AD  G+Y+ CF    + G E++  E+ + L   V+ +  +  K  E+L PL+L  RR E     ++K++ S++QREA++R T+ESTN R+ +FS+ S++ L+ ++IWQV +LKS+F++KKL+
Sbjct:    5 FLCIVAAFASVEAISFKLDPGSTRCLRQELTNGTFVKGDFKASVVEKQSVQIEIKDDYGRSAYTKEN---------ADSGKIAYVADNAGVYETCFTSKVDSGAEMKMHEITVDLKSGVEANEYDAVKEAENLAPLELAIRRMEELAESIAKDMGSMKQREANMRNTNESTNARVLYFSVVSMMCLVGLAIWQVYYLKSYFKSKKLI 202          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|301123013|ref|XP_002909233.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099995|gb|EEY58047.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 102.834 bits (255), Expect = 2.659e-23
Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 0
Query:   55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            +NA+Q D++    +C++DE A      +    +G  R Q G+   ++ P  +    D  +    +D+      AD  G Y +CF N   +  RV   +LD    V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV +
Sbjct:   18 LNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 196          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|675184801|ref|XP_008901285.1| (hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >gi|566030008|gb|ETI52919.1| hypothetical protein F443_04070 [Phytophthora parasitica P1569] >gi|567967608|gb|ETK92779.1| hypothetical protein L915_03952 [Phytophthora parasitica] >gi|567996073|gb|ETL46197.1| hypothetical protein L916_03896 [Phytophthora parasitica] >gi|568025322|gb|ETL99340.1| hypothetical protein L917_03810 [Phytophthora parasitica] >gi|568055743|gb|ETM52484.1| hypothetical protein L914_03914 [Phytophthora parasitica] >gi|568098485|gb|ETN13212.1| hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >gi|570333674|gb|ETO81622.1| hypothetical protein F444_04125 [Phytophthora parasitica P1976] >gi|570957749|gb|ETP22728.1| hypothetical protein F441_04049 [Phytophthora parasitica CJ01A1] >gi|570993339|gb|ETP50705.1| hypothetical protein F442_04054 [Phytophthora parasitica P10297] >gi|970645746|gb|KUF86124.1| Ankyrin repeat domain-containing protein 50 [Phytophthora nicotianae] >gi|970660720|gb|KUF98246.1| Transmembrane protein Tmp21 [Phytophthora nicotianae])

HSP 1 Score: 102.834 bits (255), Expect = 2.804e-23
Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 0
Query:   55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            +NA+Q D++    +C++DE A      +    +G  R Q G+   ++ P  +    D  +    +D+      AD  G Y +CF N   +  RV   +LD    V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV +
Sbjct:   18 LNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 196          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|695426151|ref|XP_009529350.1| (hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae] >gi|348675783|gb|EGZ15601.1| hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae])

HSP 1 Score: 101.679 bits (252), Expect = 4.794e-23
Identity = 58/182 (31.87%), Postives = 97/182 (53.30%), Query Frame = 0
Query:   55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            + A+Q D++    +C++DE A      +    +G  R + G+   ++ P  +    D  +    +D+      AD  G Y +CF NG  +  RV   +LD    V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV +
Sbjct:    6 LGAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGKSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNGNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 184          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|669151670|ref|XP_008611397.1| (hypothetical protein SDRG_07346 [Saprolegnia diclina VS20] >gi|530736871|gb|EQC35113.1| hypothetical protein SDRG_07346 [Saprolegnia diclina VS20])

HSP 1 Score: 101.293 bits (251), Expect = 1.881e-22
Identity = 58/184 (31.52%), Postives = 99/184 (53.80%), Query Frame = 0
Query:   51 LLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNR-LFWDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            L++ ++A+Q D++    +C++DE A      +    +G V+   G+  ++  P  + L  D  +    ED+      A+  G Y  CF+N    V RV +      V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV +
Sbjct:   43 LMASISAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLIKDPMGKYLKEDSDIDLTSEDIHKYSFNAEAAGTYSTCFFNSNDFVTRVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMY 225          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|1214713635|gb|OWZ24520.1| (hypothetical protein PHMEG_000408 [Phytophthora megakarya])

HSP 1 Score: 100.138 bits (248), Expect = 2.679e-22
Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 0
Query:   55 VNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            ++A+Q D++    +C++DE A      +    +G  R Q G+   ++ P  +    D  +    +D+      AD  G + +CF N   +  RV   +LD    V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSIV+LL + +WQV +
Sbjct:   20 IDAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNFAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMY 198          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|813132001|ref|XP_012197729.1| (hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65] >gi|641538006|gb|KDO31850.1| hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 99.7525 bits (247), Expect = 3.731e-22
Identity = 59/184 (32.07%), Postives = 97/184 (52.72%), Query Frame = 0
Query:   51 LLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNRLF---WDGYLTAK-IEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            +L+ + A+Q D++    +C++DE A      +    +G V+   G+  +V  P  +      D  LT+  I      A+  G Y  CF+N    V RV +      V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV +
Sbjct:   13 VLASIGAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLVKDPMGKYLKEDSDIDLTSDDIHKYSFNAETAGTYSTCFFNSNDFVARVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNARVLWFSSFSIFVLLAMGLWQVMY 195          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|1173940688|gb|OQR90034.1| (hypothetical protein THRCLA_09458 [Thraustotheca clavata])

HSP 1 Score: 104.76 bits (260), Expect = 4.103e-22
Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 0
Query:   49 LALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQD--GIRGMVSTPDNR-LFWDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQV 226
            +ALL++V A+Q D++    +C++DE A      +    +G V+   G+  ++  P  + L  D  +    ED+      A+  G Y  CF+N      RV +      V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSI +LLA+ +WQV
Sbjct:    3 IALLAVVQAVQFDIKRRAEKCLSDEIAAGSLVVVHYNILGNVKGRTGVSLLIKDPLGKYLKEDSDIDLTSEDIHKFSFNAETAGTYSTCFFNSNDVAMRVSLDF-KHGVEAKDYSDIAKREHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQV 185          
BLAST of EWM28470.1 vs. NCBI_GenBank
Match: gi|953503109|emb|CEG35877.1| (transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii])

HSP 1 Score: 100.138 bits (248), Expect = 4.380e-22
Identity = 58/181 (32.04%), Postives = 96/181 (53.04%), Query Frame = 0
Query:   56 NAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVG--RVQDGIRGMVSTPDNRLF-WDGYLTAKIEDV---KIPADYFGLYKICFWNGGREVQRVEVGLLD--KAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTF 228
            +A+Q D++  + +C++DE A      +    +G  R Q G+   ++ P  +    D  +    +D+      AD  G Y +CF N   +  RV   +LD    V+  +      +EHL P++   R+ E TV  + +E+  +R+REA++R T+ESTN R+ WFS FSI +LL + IWQV +
Sbjct:   39 DAVQFDVRRRSEKCLSDEVAQGSLVVVHYDVIGGVRGQSGVALSITDPLRKFLKQDTNIDTSSDDIHKFSFTADTGGSYAVCFVNNNDKPMRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVEEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIAVLLGMGIWQVMY 216          
The following BLAST results are available for this feature:
BLAST of EWM28470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110880|gb|EWM28470.1|1.222e-177100.00transmembrane emp24 domain-containing protein 10 [... [more]
gi|929761839|ref|XP_014155900.1|1.658e-2531.88hypothetical protein SARC_05711 [Sphaeroforma arct... [more]
gi|301123013|ref|XP_002909233.1|2.659e-2332.42conserved hypothetical protein [Phytophthora infes... [more]
gi|675184801|ref|XP_008901285.1|2.804e-2332.42hypothetical protein PPTG_08112 [Phytophthora para... [more]
gi|695426151|ref|XP_009529350.1|4.794e-2331.87hypothetical protein PHYSODRAFT_333832 [Phytophtho... [more]
gi|669151670|ref|XP_008611397.1|1.881e-2231.52hypothetical protein SDRG_07346 [Saprolegnia dicli... [more]
gi|1214713635|gb|OWZ24520.1|2.679e-2231.32hypothetical protein PHMEG_000408 [Phytophthora me... [more]
gi|813132001|ref|XP_012197729.1|3.731e-2232.07hypothetical protein SPRG_03770 [Saprolegnia paras... [more]
gi|1173940688|gb|OQR90034.1|4.103e-2232.61hypothetical protein THRCLA_09458 [Thraustotheca c... [more]
gi|953503109|emb|CEG35877.1|4.380e-2232.04transmembrane emp24 domain-containing protein 10-l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2213rna2213Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications