|
|
Properties
| Property Name | Value |
|---|
| Product | ca2 :cation antiporter family |
| Orig transcript id | gnl|cribi|Naga_101096g1.4075.mrna |
| Orig protein id | gnl|cribi|Naga_101096g1.4075 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1157439..1158477 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2203 ID=rna2203|Name=rna2203|organism=Nannochloropsis gaditana|type=mRNA|length=816bp
CTTTTTTTACACCACGTGTGGTCTTCCTCGGACGTTTTGTTGGTTGTCGG
TGGTTTTATCAACAAAGCTCGCGCCTCCTCATATTTCTTCGACAGCGTCT
CGGACGTACCGGGCACTATGCCGCCGGGGCCCTCTCCTGCGTTCGACGCC
AACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCATCCTCACC
TGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGTCCAAAGC
GAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGATGGAGGGG
GCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAGCCGCACTC
CTCCTACTTCAAGTACTTGACCCCTCCTGCTGCCAACCTCCACAACCCCG
TGTCCTCCCTCCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGACAAG
GAGAAGCAAAAAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCGGGCG
GCGGCTCTTGACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAAGGGA
CGCCCATCAAGACCTGGATGGCCCACGACAACGCGATCAAGTGTATGAAA
TGGTCCGGGAACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCAT
CAAGTACTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCC
ATGAGGGGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTC
GTCTCTTCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAG
GGAGGGGAGAAAAGGG back to topprotein sequence of rna2203 >rna2203-protein ID=rna2203-protein|Name=rna2203|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFT
HVELILYIMSVIITIPRGEQQLDPRLPPHHVLHIHLLRHLARERDPIDRG
GRDEAPAGLVGGLMRAREGGREGGKEGGRGTPSSGVEWVRARLAHLHMYL
KRMVMKREGYIEDANRWSKPTEQACV back to topmRNA from alignment at CM002458.1:1157439..1158477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2203 ID=rna2203|Name=rna2203|organism=Nannochloropsis gaditana|type=mRNA|length=1039bp|location=Sequence derived from alignment at CM002458.1:1157439..1158477+ (Nannochloropsis gaditana)
ATGACCGCCGTCGCGGTCGCGTACAAGAACCGGATGGAGCTCGCCATGGG
CATCGCCGTGGGCTCCGCCACCCAGATCAGGTCCGgggctccctccccct
ccctccctccctccctccctccctcattttgTCTGGTGGACCTGGGTTGC
AAGTTTTTCACGGCCAGTTCCCCTTCTTGGGACGCTCTCTcacttccccc
cgccctccctcccgccctccctcccgcccttcagCGTTTTcgtcatcccc
ttcctcgtcatcgctGGATGGATCATGGATAAGCCCATGACCCTGAATTT
TACGCATGTTGAGCTCATCCTTTACATCATGAGCGTCATCATTACCATCC
CCGTCCTTAggtgaggaaaggaggagggaagggagggagggagggaggga
ggaagggaagtaAGGAGGGGTTGCCTTTCGTCCATAATACACTGCACATT
GCGTTTCCAACATGTCatacccccctccctccatcccttcctccctctct
ccctccctccctcgatccctccctccctcgatccctccctcctcttctag
CGCGGGGAGCAGCAACTGGATCCAcggctccctcctcatcacgtGCTACA
TATTCATCTCCTTCGCCATCTGGCACGAGAGCGAGACCCCATTGACCGGG
GCGGGCGCGACGAGGCGCCTGCCGGGCTCGTGGGAGGGCTTatgagggcg
agggagggagggagggagggagggaaggaagggggccgTGGGACGCCCTC
CTCAGGGGTTGAATGGGTCCGTGCTCGTCTTGCACACTTGCACATGTATC
TTAAAAGGATGgtgatgaagagggaaggtaggaggggaggtgcaAGCGAA
acgagtgagggagggaggggaccaGGAATCcgcggggagggacaaggaag
ggtgatgggagtggaggagggatgatgggggtggaggggatggcgaCGCC
TCGAGGCGAGGGTGTGTGTCGAGGGGGAGATAGGGTACATAGAAGATGCA
AATAGGTGGAGCAAGCCCACTGAACAGGCATGCGTGTAA back to topCoding sequence (CDS) from alignment at CM002458.1:1157439..1158477+ >rna2203 ID=rna2203|Name=rna2203|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002458.1:1157439..1158477+ (Nannochloropsis gaditana)
ATGACCGCCGTCGCGGTCGCGTACAAGAACCGGATGGAGCTCGCCATGGG
CATCGCCGTGGGCTCCGCCACCCAGATCAGCGTTTTcgtcatccccttcc
tcgtcatcgctGGATGGATCATGGATAAGCCCATGACCCTGAATTTTACG
CATGTTGAGCTCATCCTTTACATCATGAGCGTCATCATTACCATCCCCCG
CGGGGAGCAGCAACTGGATCCAcggctccctcctcatcacgtGCTACATA
TTCATCTCCTTCGCCATCTGGCACGAGAGCGAGACCCCATTGACCGGGGC
GGGCGCGACGAGGCGCCTGCCGGGCTCGTGGGAGGGCTTatgagggcgag
ggagggagggagggagggagggaaggaagggggccgTGGGACGCCCTCCT
CAGGGGTTGAATGGGTCCGTGCTCGTCTTGCACACTTGCACATGTATCTT
AAAAGGATGgtgatgaagagggaagGGTACATAGAAGATGCAAATAGGTG
GAGCAAGCCCACTGAACAGGCATGCGTGTAAATGACCGCCGTCGCGGTCG
CGTACAAGAACCGGATGGAGCTCGCCATGGGCATCGCCGTGGGCTCCGCC
ACCCAGATCAGCGTTTTcgtcatccccttcctcgtcatcgctGGATGGAT
CATGGATAAGCCCATGACCCTGAATTTTACGCATGTTGAGCTCATCCTTT
ACATCATGAGCGTCATCATTACCATCCCCCGCGGGGAGCAGCAACTGGAT
CCAcggctccctcctcatcacgtGCTACATATTCATCTCCTTCGCCATCT
GGCACGAGAGCGAGACCCCATTGACCGGGGCGGGCGCGACGAGGCGCCTG
CCGGGCTCGTGGGAGGGCTTatgagggcgagggagggagggagggaggga
gggaaggaagggggccgTGGGACGCCCTCCTCAGGGGTTGAATGGGTCCG
TGCTCGTCTTGCACACTTGCACATGTATCTTAAAAGGATGgtgatgaaga
gggaagGGTACATAGAAGATGCAAATAGGTGGAGCAAGCCCACTGAACAG
GCATGCGTGTAAATGACCGCCGTCGCGGTCGCGTACAAGAACCGGATGGA
GCTCGCCATGGGCATCGCCGTGGGCTCCGCCACCCAGATCAGCGTTTTcg
tcatccccttcctcgtcatcgctGGATGGATCATGGATAAGCCCATGACC
CTGAATTTTACGCATGTTGAGCTCATCCTTTACATCATGAGCGTCATCAT
TACCATCCCCCGCGGGGAGCAGCAACTGGATCCAcggctccctcctcatc
acgtGCTACATATTCATCTCCTTCGCCATCTGGCACGAGAGCGAGACCCC
ATTGACCGGGGCGGGCGCGACGAGGCGCCTGCCGGGCTCGTGGGAGGGCT
TatgagggcgagggagggagggagggagggagggaaggaagggggccgTG
GGACGCCCTCCTCAGGGGTTGAATGGGTCCGTGCTCGTCTTGCACACTTG
CACATGTATCTTAAAAGGATGgtgatgaagagggaagGGTACATAGAAGA
TGCAAATAGGTGGAGCAAGCCCACTGAACAGGCATGCGTGTAAATGACCG
CCGTCGCGGTCGCGTACAAGAACCGGATGGAGCTCGCCATGGGCATCGCC
GTGGGCTCCGCCACCCAGATCAGCGTTTTcgtcatccccttcctcgtcat
cgctGGATGGATCATGGATAAGCCCATGACCCTGAATTTTACGCATGTTG
AGCTCATCCTTTACATCATGAGCGTCATCATTACCATCCCCCGCGGGGAG
CAGCAACTGGATCCAcggctccctcctcatcacgtGCTACATATTCATCT
CCTTCGCCATCTGGCACGAGAGCGAGACCCCATTGACCGGGGCGGGCGCG
ACGAGGCGCCTGCCGGGCTCGTGGGAGGGCTTatgagggcgagggaggga
gggagggagggagggaaggaagggggccgTGGGACGCCCTCCTCAGGGGT
TGAATGGGTCCGTGCTCGTCTTGCACACTTGCACATGTATCTTAAAAGGA
TGgtgatgaagagggaagGGTACATAGAAGATGCAAATAGGTGGAGCAAG
CCCACTGAACAGGCATGCGTGTAA back to top
|