EWM28478.1, cds2195 (CDS) Nannochloropsis gaditana

Overview
NameEWM28478.1
Unique Namecds2195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1157439..1157518 +
Alignment locationCM002458.1:1157673..1157790 +
Alignment locationCM002458.1:1157989..1158265 +
Alignment locationCM002458.1:1158422..1158477 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28478.1
Productca2 :cation antiporter family
Orig transcript idgnl|cribi|Naga_101096g1.4075.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1157439..1157518 +
CM002458.1supercontigCM002458.1:1157673..1157790 +
CM002458.1supercontigCM002458.1:1157989..1158265 +
CM002458.1supercontigCM002458.1:1158422..1158477 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0005975carbohydrate metabolic process
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
Homology
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|585110889|gb|EWM28478.1| (ca2 :cation antiporter family [Nannochloropsis gaditana])

HSP 1 Score: 358.992 bits (920), Expect = 2.004e-125
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVIITIPRGEQQLDPRLPPHHVLHIHLLRHLARERDPIDRGGRDEAPAGLVGGLMRAREGGREGGKEGGRGTPSSGVEWVRARLAHLHMYLKRMVMKREGYIEDANRWSKPTEQACV 176
            MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVIITIPRGEQQLDPRLPPHHVLHIHLLRHLARERDPIDRGGRDEAPAGLVGGLMRAREGGREGGKEGGRGTPSSGVEWVRARLAHLHMYLKRMVMKREGYIEDANRWSKPTEQACV
Sbjct:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVIITIPRGEQQLDPRLPPHHVLHIHLLRHLARERDPIDRGGRDEAPAGLVGGLMRAREGGREGGKEGGRGTPSSGVEWVRARLAHLHMYLKRMVMKREGYIEDANRWSKPTEQACV 176
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188843|emb|CCA23371.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 91.2781 bits (225), Expect = 3.642e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188835|emb|CCA23363.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 91.2781 bits (225), Expect = 3.751e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188841|emb|CCA23369.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 3.960e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188844|emb|CCA23372.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 3.961e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188834|emb|CCA23362.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 3.963e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188842|emb|CCA23370.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 3.994e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  367 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 429
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188837|emb|CCA23365.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 3.996e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  367 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 429
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188846|emb|CCA23374.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 4.005e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  367 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 429
[Close]
BLAST of EWM28478.1 vs. NCBI_GenBank
Match: gi|325188836|emb|CCA23364.1| (Ca2 :Cation Antiporter (CaCA) Family putative [Albugo laibachii Nc14])

HSP 1 Score: 90.8929 bits (224), Expect = 4.011e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MTAVAVAYKNRMELAMGIAVGSATQISVFVIPFLVIAGWIMDKPMTLNFTHVELILYIMSVII 63
            +TA+ VA   +MELAMG+AVGSATQ+S+FV+P +VIAGWIM +PMTL F   E+++Y+MSVII
Sbjct:  374 VTAIRVARNGKMELAMGVAVGSATQVSLFVVPIVVIAGWIMGQPMTLAFPEFEILIYMMSVII 436
The following BLAST results are available for this feature:
BLAST of EWM28478.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110889|gb|EWM28478.1|2.004e-125100.00ca2 :cation antiporter family [Nannochloropsis gad... [more]
gi|325188843|emb|CCA23371.1|3.642e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188835|emb|CCA23363.1|3.751e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188841|emb|CCA23369.1|3.960e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188844|emb|CCA23372.1|3.961e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188834|emb|CCA23362.1|3.963e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188842|emb|CCA23370.1|3.994e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188837|emb|CCA23365.1|3.996e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188846|emb|CCA23374.1|4.005e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
gi|325188836|emb|CCA23364.1|4.011e-1863.49Ca2 :Cation Antiporter (CaCA) Family putative [Alb... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2203rna2203Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications