rna2202, rna2202 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2202
Unique Name	rna2202
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1539
Alignment location	CM002458.1:1154132..1155446 -

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Properties


Property Name	Value
Product	isoform a
Orig transcript id	gnl\|cribi\|Naga_101210g1.9.mrna
Orig protein id	gnl\|cribi\|Naga_101210g1.9
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1154132..1155446 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101210g1	gene2105	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2202	rna2202-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28479.1	cds2194	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1154132..1155446-
coding sequence from alignment at CM002458.1:1154132..1155446-

mRNA sequence

>rna2202 ID=rna2202|Name=rna2202|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
GGGCGACGAATGTGCCCTTAGATGCAGCCCCCTCAAAGCTCAGCGGATAC
TGGCCCACACACTAACCTCCCATGCAATTTAGGGCCCGAGCACGTTCCCG
ATTTGTACAGAACACTTCTATCTGCTCTTGATACGGCCAATTCTACAGCC
CGTGAGAAAGCAGAGGGAGCGCTGCGAAGGTTTGAGACAGTACCTTGCTT
TTTGGATGCCTTGGCTGTTATCATACAAGCTCCTGAGGCTGACATTCGCC
GCGAAGCTCGCCTTCTCGCCGTCTTATGCATAAACAATGTCGTTCGACGG
CATTGGCGAAATAACAATACCCGCAATGGTAGCCAAAATCCGAGAGTAGG
GGGGACAAGGCTTGAAACTCATGTACAAGAACGATTTGGTGGAAGCGGAG
GACGAGAAACGAATAACAGCACTTCCCACAGCCCACATGCAGTGTACTTG
AGGGAACAGCAGCTAGAGGCGCGAACAGTAAGTGATGAAGAAAAAAAACG
CACGCGCACATTTCTGATCTATCACATGTGCGAGCGCGACGACGTCGTGG
CCAAGAATTTAGCGCACGTGCTCGCCAAAGTCGTCCGTGCTGATTGGCCC
AGGCAATGGCCCGACTTCTTTCAGCAACTCCTTTCCCTCCATCCGTTCCA
CGGTAGCGGAGCCATTAGCAAGAACAATAATTTCCATCAGCAGGATGATT
TGCAAACCCTCCGAGTCATTCAAACTCTGTACCGGGTGATCAAAGAATTG
GCAGGGAAGGGCCTGTTAGCCGATAAGGCGGCTTTCCAAAGCATGGCTCG
GTCACTCTTTCCCGTCGTCCACCGAGAACTTTGGCTGCCTCGCCTGCACC
GATTGGTCGCGTTTCTGGAGCAAGGTGACTACGGAGAACATGTCCTCAGG
CGGGCGCGGGTCGTGAAGACTTTGAGCAAAACATTGTGTTACCTCAGCGT
GCAGCATGCTGGAGTCCTGGAGCGCGACAGCCTGGAGTCGTTCTTCTTCC
ACGCATACTCTGCCTTCGGACCCTTGCTAACGGCCGAAAAGGGACTTTTG
GCGCCCTTCGCCACGGCGTCCTCCCCGGCTGCGACATTGCCAGCGCCTCT
TTCTGACCTGCTCATAGCGCTGGCCAAAATCACCAAAAATCTCAGTTACA
CGGTCTCTGAGACGCAACAACGTTCTCCCTCAAGCCTGAGCAGCGCCACT
CTTTCCCTCTTCCTCCACTTGTTTTTTGAGCATGTCTGCAGTACCGCCTC
CTGCCCCTCCGAACCCGTCCTAGCCGCTTTGGTCTGGGACCCGGGTCTTG
AAAGTTGTTCCAGAAAGTTCTATCTGAACGCCTGTGCCTTTTTGGGCAAC
TGCCTGTCCTGTCCCGACTATCAGTCCGGTGAGCACCATGTCATGCTTTC
CTTGCCCCCCACCAAGGATCTTATGGATCTTTTCCGGACTTTCCCTTTCC
TATTCTCTATCCAGCTGGTCGTTCCCAGGACGAAGGAAGCGTGCGGGTGG
CCGCCGATTTCTTCACCGAGGAGCGTGTCTTGCAGCTAA

protein sequence of rna2202

>rna2202-protein ID=rna2202-protein|Name=rna2202|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLD
PTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPL
FHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTW
MAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVT
AVSFAPSDAKFVSSSDDQVGREGGREGREGRKG

mRNA from alignment at CM002458.1:1154132..1155446-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2202 ID=rna2202|Name=rna2202|organism=Nannochloropsis gaditana|type=mRNA|length=1315bp|location=Sequence derived from alignment at CM002458.1:1154132..1155446- (Nannochloropsis gaditana)
CTTTTTTTACACCACGTGTGGTCTTCCTCGGACGTTTTGTTGGTTGTCGG
TGGTTTTATCAACAAAGCTCGCGCCTCCTCATATTTCTTCGACAGCGTCT
CGGACGTACCGGGCACTATGCCGCCGGGGCCCTCTCCTGCGTTCGACGCC
AACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCATCCTCACC
TGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGTCCAAAGC
GAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGATGGAGGGG
GCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAGGTGACAAG
CACGCATGCTCAAGGGCATTCGTTGGACGGCTGGAAAGGGATGCTATGCC
GCGACAGTGTGAAGCATGGGGACGCGTCCATGTGGTTGATTCCATCCCTC
TCCCTCTCCTTCCCTCCTCCCCTCCTTCCCACTCTTCTTCCTTCCCTCCC
TCCTGTTTTCGTCTCTCTCCCTTCCACGACAGCCGCACTCCTCCTACTTC
AAGTACTTGACCCCTCCTGCTGCCAACCTCCACAACCCCGTGTCCTCCCT
CCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGACAAGGAGAAGCAAA
AAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCGGGCGGCGGCTCTTG
ACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAAGGGACGCCCATCAA
GACCTGGATGGTGCGGAGGGAATGGAGGAAGGAGGTGGTGGGGGGCGAGG
TCGAGGTGGAGGACGGGGGGGGCAGACAGCACTTTGAACAGGCGTCTCTC
CCGCCACAGCCTCCCTCAGCGCCACCCTCCATACTCATCACCGGGTTCCC
TCACTCCCCTCCAGGCCCACGACAACGCGATCAAGTGTATGAAATGGTCC
GGGAACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCATCAAGTG
CGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCTTTGCTGGTGCAAGA
CGACTTGTTACGCGTCCCGGCACACGTATCAATGTCTCCCTCCCTTCCTC
CCTTCCTCCCTTCCTCTCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTCCC
AGGTACTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCCA
TGAGGGGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTCG
TCTCTTCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAGG
GAGGGGAGAAAAGGG

Coding sequence (CDS) from alignment at CM002458.1:1154132..1155446-

>rna2202 ID=rna2202|Name=rna2202|organism=Nannochloropsis gaditana|type=CDS|length=2796bp|location=Sequence derived from alignment at CM002458.1:1154132..1155446- (Nannochloropsis gaditana)
GTACTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCCATG
AGGGGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTCGTC
TCTTCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAGGGA
GGGGAGAAAAGGGGCCCACGACAACGCGATCAAGTGTATGAAATGGTCCG
GGAACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCATCAACCGC
ACTCCTCCTACTTCAAGTACTTGACCCCTCCTGCTGCCAACCTCCACAAC
CCCGTGTCCTCCCTCCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGA
CAAGGAGAAGCAAAAAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCG
GGCGGCGGCTCTTGACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAA
GGGACGCCCATCAAGACCTGGATGATGCCGCCGGGGCCCTCTCCTGCGTT
CGACGCCAACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCAT
CCTCACCTGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGT
CCAAAGCGAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGAT
GGAGGGGGCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAGG
TACTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCCATGA
GGGGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTCGTCT
CTTCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAGGGAG
GGGAGAAAAGGGGCCCACGACAACGCGATCAAGTGTATGAAATGGTCCGG
GAACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCATCAACCGCA
CTCCTCCTACTTCAAGTACTTGACCCCTCCTGCTGCCAACCTCCACAACC
CCGTGTCCTCCCTCCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGAC
AAGGAGAAGCAAAAAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCGG
GCGGCGGCTCTTGACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAAG
GGACGCCCATCAAGACCTGGATGATGCCGCCGGGGCCCTCTCCTGCGTTC
GACGCCAACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCATC
CTCACCTGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGTC
CAAAGCGAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGATG
GAGGGGGCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAGGT
ACTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCCATGAG
GGGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTCGTCTC
TTCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGG
GGAGAAAAGGGGCCCACGACAACGCGATCAAGTGTATGAAATGGTCCGGG
AACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCATCAACCGCAC
TCCTCCTACTTCAAGTACTTGACCCCTCCTGCTGCCAACCTCCACAACCC
CGTGTCCTCCCTCCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGACA
AGGAGAAGCAAAAAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCGGG
CGGCGGCTCTTGACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAAGG
GACGCCCATCAAGACCTGGATGATGCCGCCGGGGCCCTCTCCTGCGTTCG
ACGCCAACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCATCC
TCACCTGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGTCC
AAAGCGAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGATGG
AGGGGGCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAGGTA
CTGGGCGCGCCTGAATAGCGTGGCGGCCTTCGACTTGCGGGCCCATGAGG
GGGAGGTAACCGCTGTCTCCTTCGCCCCCAGCGACGCCAAGTTCGTCTCT
TCGAGCGATGATCAGGTGGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGGG
GAGAAAAGGGGCCCACGACAACGCGATCAAGTGTATGAAATGGTCCGGGA
ACGGGAACTTCATGCTCACGGGGGCCCGAAACGGCATCATCAACCGCACT
CCTCCTACTTCAAGTACTTGACCCCTCCTGCTGCCAACCTCCACAACCCC
GTGTCCTCCCTCCCCCTCTTCCACCTCCGCTCCATCGTCATCCGCGACAA
GGAGAAGCAAAAAGGCCCCATCTTCGTGGCATCCTGGGATCCGACCGGGC
GGCGGCTCTTGACAGGGAGCGAATCGGGCTATGTGGTGGTCATTCAAGGG
ACGCCCATCAAGACCTGGATGATGCCGCCGGGGCCCTCTCCTGCGTTCGA
CGCCAACAACGCCGGCATGAGCACCTACGGTCCAGCATTTGGAGCATCCT
CACCTGTGTTGAATAAAGGGGTCGATGCCACCGGTCGCGCCCGACGTCCA
AAGCGAAAAAAGCCTCTTGACCCGACGGCGGCGGTGATGTTGCAGATGGA
GGGGGCGCCCTTTTGGACGACCTGGAGGGACCAGCCCGTGATACAG

Synonyms

Publications