EWM28479.1, cds2194 (CDS) Nannochloropsis gaditana

Overview
NameEWM28479.1
Unique Namecds2194
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1155105..1155329 -
Alignment locationCM002458.1:1154687..1154914 -
Alignment locationCM002458.1:1154450..1154532 -
Alignment locationCM002458.1:1154132..1154294 -

Link to JBrowse

Properties
Property NameValue
Start range1154132
Start range.
Protein idEWM28479.1
Productisoform a
Partialtrue
Orig transcript idgnl|cribi|Naga_101210g1.9.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1155105..1155329 -
CM002458.1supercontigCM002458.1:1154687..1154914 -
CM002458.1supercontigCM002458.1:1154450..1154532 -
CM002458.1supercontigCM002458.1:1154132..1154294 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|585110891|gb|EWM28479.1| (isoform a, partial [Nannochloropsis gaditana])

HSP 1 Score: 481.485 bits (1238), Expect = 4.107e-172
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG 233
            MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG
Sbjct:    1 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG 233          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|196007660|ref|XP_002113696.1| (hypothetical protein TRIADDRAFT_26233 [Trichoplax adhaerens] >gi|190584100|gb|EDV24170.1| hypothetical protein TRIADDRAFT_26233 [Trichoplax adhaerens])

HSP 1 Score: 124.79 bits (312), Expect = 7.361e-30
Identity = 66/183 (36.07%), Postives = 102/183 (55.74%), Query Frame = 0
Query:   39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217
            R R+  +++ +D  A+V+ Q+E   + + +RDQPVIQP   YF  L PP++   NP++++    +R+       KQ+ PIF   W P GRRL+TG+ SG   +  G          AHD +++ M WS N  ++LT    G IKYW + +N+V  F+   H+  +   SF P+D KF + SDD
Sbjct:   40 RMRKAVQRRTIDYNASVIRQLESRVWQSDYRDQPVIQPDPLYFNSLLPPSSMKQNPMNAVTTKFVRT----STNKQRCPIFCVVWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDTSVRSMIWSHNDTWLLTTDTGGYIKYWQSNMNNVQMFE--GHKEAIREASFCPTDIKFTTCSDD 216          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|906473100|gb|KNC33074.1| (hypothetical protein FF38_13121, partial [Lucilia cuprina])

HSP 1 Score: 116.316 bits (290), Expect = 9.899e-28
Identity = 65/187 (34.76%), Postives = 105/187 (56.15%), Query Frame = 0
Query:   39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221
            R R+   +K +D  AA++ ++E   +    RD+  +QP S Y   L PP++ L NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N ++M+TG   G +KYW + +N+V  F  +AH+  +  +SF+P+D+KFVS SDD   R
Sbjct:   73 RLRKSVMRKTVDYNAAIVKKLEARLWQRDSRDRFALQPESIYVPELLPPSSYLDNPSNAITTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMF--QAHKEAIRGISFSPTDSKFVSCSDDGTLR 253          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|1037038458|ref|XP_016989104.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33 [Drosophila rhopaloa])

HSP 1 Score: 118.627 bits (296), Expect = 6.132e-27
Identity = 73/222 (32.88%), Postives = 116/222 (52.25%), Query Frame = 0
Query:    7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221
            P   AN  G + + P    G   P      D  G R R+   +K +D  A+++  +E   F    RD+  +QP S Y  ++ PP+A L NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N ++M+TG   G +KYW + +N+V  +  +AH+  +  +SF+P+D+KFVS SDD   R
Sbjct:   39 PHHGANKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKTLENRLFQRDHRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 254          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|194898847|ref|XP_001978974.1| (uncharacterized protein Dere_GG12984 [Drosophila erecta] >gi|190650677|gb|EDV47932.1| uncharacterized protein Dere_GG12984 [Drosophila erecta])

HSP 1 Score: 118.627 bits (296), Expect = 6.778e-27
Identity = 64/187 (34.22%), Postives = 106/187 (56.68%), Query Frame = 0
Query:   39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221
            R R+   +K +D  A+++  +E   F   +RD+  +QP S Y  ++ PP+A L NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N ++M+TG   G +KYW + +N+V  +  +AH+  +  +SF+P+D+KFVS SDD   R
Sbjct:   73 RLRKSVMRKTVDYNASIIKALENRLFQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 253          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|568258570|gb|ETN66682.1| (wd-repeat protein [Anopheles darlingi])

HSP 1 Score: 118.627 bits (296), Expect = 6.827e-27
Identity = 66/187 (35.29%), Postives = 103/187 (55.08%), Query Frame = 0
Query:   39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221
            R R+   +K +D  AA++  +E   +   +RD+  +QP S Y   L PP + + NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N N+M+TG   G +KYW + +N+V  F  +AH+  +  +SF+PSDAKF S SDD   R
Sbjct:   69 RLRKSVMRKTVDYNAAIIKALESRTWQRDYRDRRALQPESIYIPELLPPPSYMDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLITGASSGEFTLWNGLMFNFETILQAHDVSVRTMVWSHNDNWMVTGDHGGYVKYWQSNMNNVKMF--QAHKDPIRGISFSPSDAKFASCSDDGTVR 249          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|24644361|ref|NP_730982.1| (CG1109, isoform A [Drosophila melanogaster] >gi|24644363|ref|NP_730983.1| CG1109, isoform B [Drosophila melanogaster] >gi|15291701|gb|AAK93119.1| LD24014p [Drosophila melanogaster] >gi|23170399|gb|AAF51974.2| CG1109, isoform A [Drosophila melanogaster] >gi|23170400|gb|AAN13257.1| CG1109, isoform B [Drosophila melanogaster] >gi|1067130334|gb|AOQ08584.1| CG1109-RA, partial [synthetic construct])

HSP 1 Score: 117.857 bits (294), Expect = 9.680e-27
Identity = 70/218 (32.11%), Postives = 116/218 (53.21%), Query Frame = 0
Query:    7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217
            P   +N  G + + P    G   P      D  G R R+   +K +D  A+++  +E   +   +RD+  +QP S Y  ++ PP+A L NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N ++M+TG   G +KYW + +N+V  +  +AH+  +  +SF+P+D+KFVS SDD
Sbjct:   39 PHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDD 250          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|919003120|ref|XP_013416027.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33-like [Lingula anatina])

HSP 1 Score: 117.857 bits (294), Expect = 9.755e-27
Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 0
Query:   11 ANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217
             NNAG +    A G    V+N       R R+   +K +D   +++  +E   +    RD+  +QP S Y   L PP A L NP++++   H+R+       K K P+F   W P GRRL+TG+ SG   +  G          AHD++++ M+WS N  ++LTG   G +KYW + +N+V  +  +AH+  +  +SF P+D+K+ S SDD
Sbjct:   31 VNNAGANRQFNAQG----VMNATTFDGKRLRKSVYRKTIDYNTSMIQMLENRIWQRDHRDRRALQPDSLYHSELVPPMAMLDNPMNAVTTKHVRTST----NKFKCPVFCVCWTPEGRRLVTGASSGEFTLWSGLTFNFETILQAHDSSVRAMQWSHNDQWLLTGDHGGYVKYWQSNMNNVKMY--QAHKEPIRGLSFCPTDSKYTSCSDD 231          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|919018708|ref|XP_013393554.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33-like [Lingula anatina])

HSP 1 Score: 117.857 bits (294), Expect = 1.095e-26
Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 0
Query:   11 ANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217
             NNAG +    A G    V+N       R R+   +K +D   +++  +E   +    RD+  +QP S Y   L PP A L NP++++   H+R+       K K P+F   W P GRRL+TG+ SG   +  G          AHD++++ M+WS N  ++LTG   G +KYW + +N+V  +  +AH+  +  +SF P+D+K+ S SDD
Sbjct:   31 VNNAGANRQFNAQG----VMNATTFDGKRLRKSVYRKTIDYNTSMIQMLENRIWQRDHRDRRALQPDSLYHSELVPPMAMLDNPMNAVTTKHVRTST----NKFKCPVFCVCWTPEGRRLVTGASSGEFTLWSGLTFNFETILQAHDSSVRAMQWSHNDQWLLTGDHGGYVKYWQSNMNNVKMY--QAHKEPIRGLSFCPTDSKYTSCSDD 231          
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|1013923665|ref|XP_016033362.1| (uncharacterized protein Dsimw501_GD19809 [Drosophila simulans] >gi|900912188|gb|KMZ01690.1| uncharacterized protein Dsimw501_GD19809 [Drosophila simulans])

HSP 1 Score: 117.472 bits (293), Expect = 1.316e-26
Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 0
Query:    7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221
            P   +N  G + + P    G   P      D  G R R+   +K +D  A+++  +E   +   +RD+  +QP S Y  ++ PP+A L NP +++    +++       K + PIF  +W P GRRL+TG+ SG   +  G          AHD +++ M WS N ++M+TG   G +KYW + +N+V  +  +AH+  +  +SF+P+D+KFVS SDD   R
Sbjct:   39 PHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 254          
The following BLAST results are available for this feature:
BLAST of EWM28479.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110891|gb|EWM28479.1|4.107e-172100.00isoform a, partial [Nannochloropsis gaditana][more]
gi|196007660|ref|XP_002113696.1|7.361e-3036.07hypothetical protein TRIADDRAFT_26233 [Trichoplax ... [more]
gi|906473100|gb|KNC33074.1|9.899e-2834.76hypothetical protein FF38_13121, partial [Lucilia ... [more]
gi|1037038458|ref|XP_016989104.1|6.132e-2732.88PREDICTED: pre-mRNA 3' end processing protein WDR3... [more]
gi|194898847|ref|XP_001978974.1|6.778e-2734.22uncharacterized protein Dere_GG12984 [Drosophila e... [more]
gi|568258570|gb|ETN66682.1|6.827e-2735.29wd-repeat protein [Anopheles darlingi][more]
gi|24644361|ref|NP_730982.1|9.680e-2732.11CG1109, isoform A [Drosophila melanogaster] >gi|24... [more]
gi|919003120|ref|XP_013416027.1|9.755e-2733.18PREDICTED: pre-mRNA 3' end processing protein WDR3... [more]
gi|919018708|ref|XP_013393554.1|1.095e-2633.18PREDICTED: pre-mRNA 3' end processing protein WDR3... [more]
gi|1013923665|ref|XP_016033362.1|1.316e-2631.98uncharacterized protein Dsimw501_GD19809 [Drosophi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2202rna2202Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications