EWM28479.1, cds2194 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|585110891|gb|EWM28479.1| (isoform a, partial [Nannochloropsis gaditana]) HSP 1 Score: 481.485 bits (1238), Expect = 4.107e-172 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 Query: 1 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG 233 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG Sbjct: 1 MPPGPSPAFDANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIKTWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYWARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGREGGREGREGRKG 233
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|196007660|ref|XP_002113696.1| (hypothetical protein TRIADDRAFT_26233 [Trichoplax adhaerens] >gi|190584100|gb|EDV24170.1| hypothetical protein TRIADDRAFT_26233 [Trichoplax adhaerens]) HSP 1 Score: 124.79 bits (312), Expect = 7.361e-30 Identity = 66/183 (36.07%), Postives = 102/183 (55.74%), Query Frame = 0 Query: 39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217 R R+ +++ +D A+V+ Q+E + + +RDQPVIQP YF L PP++ NP++++ +R+ KQ+ PIF W P GRRL+TG+ SG + G AHD +++ M WS N ++LT G IKYW + +N+V F+ H+ + SF P+D KF + SDD Sbjct: 40 RMRKAVQRRTIDYNASVIRQLESRVWQSDYRDQPVIQPDPLYFNSLLPPSSMKQNPMNAVTTKFVRT----STNKQRCPIFCVVWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDTSVRSMIWSHNDTWLLTTDTGGYIKYWQSNMNNVQMFE--GHKEAIREASFCPTDIKFTTCSDD 216
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|906473100|gb|KNC33074.1| (hypothetical protein FF38_13121, partial [Lucilia cuprina]) HSP 1 Score: 116.316 bits (290), Expect = 9.899e-28 Identity = 65/187 (34.76%), Postives = 105/187 (56.15%), Query Frame = 0 Query: 39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221 R R+ +K +D AA++ ++E + RD+ +QP S Y L PP++ L NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N ++M+TG G +KYW + +N+V F +AH+ + +SF+P+D+KFVS SDD R Sbjct: 73 RLRKSVMRKTVDYNAAIVKKLEARLWQRDSRDRFALQPESIYVPELLPPSSYLDNPSNAITTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMF--QAHKEAIRGISFSPTDSKFVSCSDDGTLR 253
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|1037038458|ref|XP_016989104.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33 [Drosophila rhopaloa]) HSP 1 Score: 118.627 bits (296), Expect = 6.132e-27 Identity = 73/222 (32.88%), Postives = 116/222 (52.25%), Query Frame = 0 Query: 7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221 P AN G + + P G P D G R R+ +K +D A+++ +E F RD+ +QP S Y ++ PP+A L NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N ++M+TG G +KYW + +N+V + +AH+ + +SF+P+D+KFVS SDD R Sbjct: 39 PHHGANKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKTLENRLFQRDHRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 254
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|194898847|ref|XP_001978974.1| (uncharacterized protein Dere_GG12984 [Drosophila erecta] >gi|190650677|gb|EDV47932.1| uncharacterized protein Dere_GG12984 [Drosophila erecta]) HSP 1 Score: 118.627 bits (296), Expect = 6.778e-27 Identity = 64/187 (34.22%), Postives = 106/187 (56.68%), Query Frame = 0 Query: 39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221 R R+ +K +D A+++ +E F +RD+ +QP S Y ++ PP+A L NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N ++M+TG G +KYW + +N+V + +AH+ + +SF+P+D+KFVS SDD R Sbjct: 73 RLRKSVMRKTVDYNASIIKALENRLFQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 253
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|568258570|gb|ETN66682.1| (wd-repeat protein [Anopheles darlingi]) HSP 1 Score: 118.627 bits (296), Expect = 6.827e-27 Identity = 66/187 (35.29%), Postives = 103/187 (55.08%), Query Frame = 0 Query: 39 RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221 R R+ +K +D AA++ +E + +RD+ +QP S Y L PP + + NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N N+M+TG G +KYW + +N+V F +AH+ + +SF+PSDAKF S SDD R Sbjct: 69 RLRKSVMRKTVDYNAAIIKALESRTWQRDYRDRRALQPESIYIPELLPPPSYMDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLITGASSGEFTLWNGLMFNFETILQAHDVSVRTMVWSHNDNWMVTGDHGGYVKYWQSNMNNVKMF--QAHKDPIRGISFSPSDAKFASCSDDGTVR 249
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|24644361|ref|NP_730982.1| (CG1109, isoform A [Drosophila melanogaster] >gi|24644363|ref|NP_730983.1| CG1109, isoform B [Drosophila melanogaster] >gi|15291701|gb|AAK93119.1| LD24014p [Drosophila melanogaster] >gi|23170399|gb|AAF51974.2| CG1109, isoform A [Drosophila melanogaster] >gi|23170400|gb|AAN13257.1| CG1109, isoform B [Drosophila melanogaster] >gi|1067130334|gb|AOQ08584.1| CG1109-RA, partial [synthetic construct]) HSP 1 Score: 117.857 bits (294), Expect = 9.680e-27 Identity = 70/218 (32.11%), Postives = 116/218 (53.21%), Query Frame = 0 Query: 7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217 P +N G + + P G P D G R R+ +K +D A+++ +E + +RD+ +QP S Y ++ PP+A L NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N ++M+TG G +KYW + +N+V + +AH+ + +SF+P+D+KFVS SDD Sbjct: 39 PHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDD 250
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|919003120|ref|XP_013416027.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33-like [Lingula anatina]) HSP 1 Score: 117.857 bits (294), Expect = 9.755e-27 Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 0 Query: 11 ANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217 NNAG + A G V+N R R+ +K +D +++ +E + RD+ +QP S Y L PP A L NP++++ H+R+ K K P+F W P GRRL+TG+ SG + G AHD++++ M+WS N ++LTG G +KYW + +N+V + +AH+ + +SF P+D+K+ S SDD Sbjct: 31 VNNAGANRQFNAQG----VMNATTFDGKRLRKSVYRKTIDYNTSMIQMLENRIWQRDHRDRRALQPDSLYHSELVPPMAMLDNPMNAVTTKHVRTST----NKFKCPVFCVCWTPEGRRLVTGASSGEFTLWSGLTFNFETILQAHDSSVRAMQWSHNDQWLLTGDHGGYVKYWQSNMNNVKMY--QAHKEPIRGLSFCPTDSKYTSCSDD 231
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|919018708|ref|XP_013393554.1| (PREDICTED: pre-mRNA 3' end processing protein WDR33-like [Lingula anatina]) HSP 1 Score: 117.857 bits (294), Expect = 1.095e-26 Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 0 Query: 11 ANNAGMSTYGPAFGASSPVLNKGVDATGRARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDD 217 NNAG + A G V+N R R+ +K +D +++ +E + RD+ +QP S Y L PP A L NP++++ H+R+ K K P+F W P GRRL+TG+ SG + G AHD++++ M+WS N ++LTG G +KYW + +N+V + +AH+ + +SF P+D+K+ S SDD Sbjct: 31 VNNAGANRQFNAQG----VMNATTFDGKRLRKSVYRKTIDYNTSMIQMLENRIWQRDHRDRRALQPDSLYHSELVPPMAMLDNPMNAVTTKHVRTST----NKFKCPVFCVCWTPEGRRLVTGASSGEFTLWSGLTFNFETILQAHDSSVRAMQWSHNDQWLLTGDHGGYVKYWQSNMNNVKMY--QAHKEPIRGLSFCPTDSKYTSCSDD 231
BLAST of EWM28479.1 vs. NCBI_GenBank
Match: gi|1013923665|ref|XP_016033362.1| (uncharacterized protein Dsimw501_GD19809 [Drosophila simulans] >gi|900912188|gb|KMZ01690.1| uncharacterized protein Dsimw501_GD19809 [Drosophila simulans]) HSP 1 Score: 117.472 bits (293), Expect = 1.316e-26 Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 0 Query: 7 PAFDANNAGMSTYGPAF--GASSPVLNKGVDATG-RARRPKRKKPLDPTAAVMLQMEGAPFWTTWRDQPVIQPHSSYFKYLTPPAANLHNPVSSLPLFHLRSIVIRDKEKQKGPIFVASWDPTGRRLLTGSESGYVVVIQGTPIK---TWMAHDNAIKCMKWSGNGNFMLTGARNGIIKYW-ARLNSVAAFDLRAHEGEVTAVSFAPSDAKFVSSSDDQVGR 221 P +N G + + P G P D G R R+ +K +D A+++ +E + +RD+ +QP S Y ++ PP+A L NP +++ +++ K + PIF +W P GRRL+TG+ SG + G AHD +++ M WS N ++M+TG G +KYW + +N+V + +AH+ + +SF+P+D+KFVS SDD R Sbjct: 39 PHHGSNKHGYNQFKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTAT----NKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMY--QAHKEAIRGISFSPTDSKFVSGSDDGTLR 254 The following BLAST results are available for this feature:
BLAST of EWM28479.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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