rna2201, rna2201 (mRNA) Nannochloropsis gaditana

Overview
Namerna2201
Unique Namerna2201
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1787
Alignment locationCM002458.1:1150074..1151612 +

Link to JBrowse

Properties
Property NameValue
ProductImportin-beta
Orig transcript idgnl|cribi|Naga_100592g1.8444.mrna
Orig protein idgnl|cribi|Naga_100592g1.8444
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1150074..1151612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100592g1gene2104Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2201rna2201-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28480.1cds2193Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2201 ID=rna2201|Name=rna2201|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp
ATGCCTGAGGTCTTAGCCCAAGCTTTCCACTCCGGCTCTGCCCACGACAC
ACCATCTGATGCTTCCCTTGGTGCCCAGGCATCGGACCCATCGGCTTCCG
CGCCAATGGCCGATGGGGCCTACGCGGCCCGTCTTCTCGCACTGGTGGAC
GCCGTGCACGGCAACGAGAGAGACCGTGCGACCGCCAGCAAGGATTCACC
CGTCATATACACAATCATCGGCCACGATGCAATCGTCCAATGCTGTCCTC
GCGTCGTTGCTTCCTTCATCGGCCCGTTTGCCCGGTTGGAAAATTCGGAA
GTGGAGAGTAGCAGCCTTCTTTCCGGGCGGGAGGAGGCCACCTGGGTAGT
GGAGGGTTCCGTAGTCTCTCGCTCCCTCTTACAGGAGGGGGTGGCTGTCC
GTGGACATGCCCTGGTTCGGGACAGCCTTTTGATGGAGCACAGCAGCGTG
GATACGGGGGGGAAATGCAGCCACGTGGTGCTGGGCCCGGACAGTGGGGT
GGCGACGGGCGAATGCCACCACAGCCTTGTGGGCCCCTGTGTAGGCTTCC
ACCATCAATCCTTGCTTATCGCCGCCCTCTGGCCCAGAGGACGGGGGAAC
GTGGCCTACGGTGCCCAGATTGGCAGCAACCATACCGGTCGGGCCGCAGA
CCAGGAGTGTCTGGTGGGAGAAGGGATCTTTTTTGGCCTGGGAGTCTTGG
TCAAACTGCCCGTCAACCTCTCCCATTCCCCCTATAGCTTGGTGGCAGCA
GGAACCAGCTTGGATCAGCAGCGCCTGCATTTCCCTTTTTCTCTCATCGC
CGCCTCGCGGGACGGTGCCTTCCTCCGACAATGTCTGGAAGATAGGATGG
GCGACATGGAGACCAGGGCGGATGCCCCCCCCATCCTCCCGAACATTCTG
CGACCCGCCTGGGTGTTGCGAGCGAGTCCTTACACGGTATTTAGAAATGA
GTCGAAATACATGCACAGAAGTAAGTCGCGGAGGCACAAAGCGATGGTGA
CAGAGCCCCTTTTCCGACCGGAAATCATCGACATGATGGTGGAGGCGCGG
GCAAGATTGCAGCAAGCCCTGGGTTCTCGCGGTGGATGGGATGAAAAATC
AACGGGGAAACCATTTTTTAGTAAAAAAGACCTAGATGGTTCGGGATCGA
ATGTGGTGACCTGGCGAGGGGCGAACGAAGGTGTCGACACGTACACAGTG
TGGATCAAACGGTATGCCCTCCGTGGATTGTACGACCGGCTCAAATACTT
GGAAAAGGAAGAAATGGGAATCAATGAGGGAGGAGTAGAGGAGGCAAGAA
AATTTAATGGAAACAGCTTTTGGGAGCATCAGAAGCCCATCCTTCTAAGT
ATGTACAGCGGAGAAGCCAGGATCACCTCCCCTCATGCTCCTAGTCCGCG
CTCTGAGGCAGCCGAGAAAAAATCAGATGTGGACATTTGTGCGCCAGATG
AAAATGTGAAAATTTCTGTGCTTCTCAGTGATCTTTTGGACGTTGAAGAA
CGCATCGTTAGGGGGGTGGTGAGGAGTAAGGAAAGGGATGAAATAAGAGG
AGCGGAAATATTAGATGACTACTCAGCCACACGGCCCCCTCTTGAAGACG
ATAAGATCATCAAGGGGGCTAAAGCAGGCTTGGTAGAAATTCGGGAGTTT
GTAGACCTTCATAAGGGAACGTATGAGGCCCTCTCCCTTTTAGATTTGTG
AGCAGTTTTTTCGGTGTTCGATAAACGAAAGAGCATGGCGTGCCCCCACA
GAAGGAAAATAAAGTACACAGTCCCTATGTTGAGATT
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protein sequence of rna2201

>rna2201-protein ID=rna2201-protein|Name=rna2201|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MQPPQSSADTGPHTNLPCNLGPEHVPDLYRTLLSALDTANSTAREKAEGA
LRRFETVPCFLDALAVIIQAPEADIRREARLLAVLCINNVVRRHWRNNNT
RNGSQNPRVGGTRLETHVQERFGGSGGRETNNSTSHSPHAVYLREQQLEA
RTVSDEEKKRTRTFLIYHMCERDDVVAKNLAHVLAKVVRADWPRQWPDFF
QQLLSLHPFHGSGAISKNNNFHQQDDLQTLRVIQTLYRVIKELAGKGLLA
DKAAFQSMARSLFPVVHRELWLPRLHRLVAFLEQGDYGEHVLRRARVVKT
LSKTLCYLSVQHAGVLERDSLESFFFHAYSAFGPLLTAEKGLLAPFATAS
SPAATLPAPLSDLLIALAKITKNLSYTVSETQQRSPSSLSSATLSLFLHL
FFEHVCSTASCPSEPVLAALVWDPGLESCSRKFYLNACAFLGNCLSCPDY
QSGEHHVMLSLPPTKDLMDLFRTFPFLFSIQLVVPRTKEACGWPPISSPR
SVSCS
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mRNA from alignment at CM002458.1:1150074..1151612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2201 ID=rna2201|Name=rna2201|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp|location=Sequence derived from alignment at CM002458.1:1150074..1151612+ (Nannochloropsis gaditana)
GGGCGACGAATGTGCCCTTAGATGCAGCCCCCTCAAAGCTCAGCGGATAC
TGGCCCACACACTAACCTCCCATGCAATTTAGGGCCCGAGCACGTTCCCG
ATTTGTACAGAACACTTCTATCTGCTCTTGATACGGCCAATTCTACAGCC
CGTGAGAAAGCAGAGGGAGCGCTGCGAAGGTTTGAGACAGTACCTTGCTT
TTTGGATGCCTTGGCTGTTATCATACAAGCTCCTGAGGCTGACATTCGCC
GCGAAGCTCGCCTTCTCGCCGTCTTATGCATAAACAATGTCGTTCGACGG
CATTGGCGAAATAACAATACCCGCAATGGTAGCCAAAATCCGAGAGTAGG
GGGGACAAGGCTTGAAACTCATGTACAAGAACGATTTGgtggaagcggag
gacgagaaacgaATAACAGCACTTCCCACAGCCCACATGCAGTGTACTTG
AGGGAACAGCAGCTAGAGGCGCGAACAGTAAGtgatgaagaaaaaaaacg
CACGCGCACATTTCTGATCTATCACATGTGCGAGCGCGACGACGTCGTGG
CCAAGAATTTAGCGCACGTGCTCGCCAAAGTCGTCCGTGCTGATTGGCCC
AGGCAATGGCCCGACTTCTTTCAGCaactcctttccctccatccgttCCA
CGGTAGCGGAGCCATTAGCAAGAACAATAATTTCCATCAGCAGGATGATT
TGCAAACCCTCCGAGTCATTCAAACTCTGTACCGGGTGATCAAAGAATTG
GCAGGGAAGGGCCTGTTAGCCGATAAGGCGGCTTTCCAAAGCATGGCTCG
GTCACTCTTTCCCGTCGTCCACCGAGAACTTTGGCTGCCTCGCCTGCACC
GATTGGTCGCGTTTCTGGAGCAAGGTGACTACGGAGAACATGTCCTCAGG
CGGGCGCGGGTCGTGAAGACTTTGAGCAAAACATTGTGTTACCTCAGCGT
GCAGCATGCTGGAGTCCTGGAGCGCGACAGCCTGGAgtcgttcttcttcc
acgcatACTCTGCCTTCGGACCCTTGCTAACGGCCGAAAAGGGACTTTTG
GCGCCCTTCGCcacggcgtcctccccggctGCGACATTGCCAGCGCCTCT
TTCTGACCTGCTCATAGCGCTGGCCAAAATCACCAAAAATCTCAGTTACA
CGGTCTCTGAGACGCAACAACGTTCTCCCTCAAGCCTGAGCAGCGccact
ctttccctcttcctccacttgtTTTTTGAGCATGTCTGCAGtaccgcctc
ctgcccctccgaaCCCGTCCTAGCCGCTTTGGTCTGGGACCCGGGTCTTG
AAAGTTGTTCCAGAAAGTTCTATCTGAACGCCTGTGCCTTTTTGGGCAAC
TGCCTGTCCTGTCCCGACTATCAGTCCGGTGAGCACCATGTCATgctttc
cttgccccccacCAAGGATCTTATGGATCTTTTCCggactttccctttcc
tATTCTCTATCCAGCTGGTCGTTCCCAGGACGAAGGAAGCGTGCGGGTGG
CCGCCGATTTCTTCACCGAGGAGCGTGTCTTGCAGCTAA
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Coding sequence (CDS) from alignment at CM002458.1:1150074..1151612+

>rna2201 ID=rna2201|Name=rna2201|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002458.1:1150074..1151612+ (Nannochloropsis gaditana)
ATGCAGCCCCCTCAAAGCTCAGCGGATACTGGCCCACACACTAACCTCCC
ATGCAATTTAGGGCCCGAGCACGTTCCCGATTTGTACAGAACACTTCTAT
CTGCTCTTGATACGGCCAATTCTACAGCCCGTGAGAAAGCAGAGGGAGCG
CTGCGAAGGTTTGAGACAGTACCTTGCTTTTTGGATGCCTTGGCTGTTAT
CATACAAGCTCCTGAGGCTGACATTCGCCGCGAAGCTCGCCTTCTCGCCG
TCTTATGCATAAACAATGTCGTTCGACGGCATTGGCGAAATAACAATACC
CGCAATGGTAGCCAAAATCCGAGAGTAGGGGGGACAAGGCTTGAAACTCA
TGTACAAGAACGATTTGgtggaagcggaggacgagaaacgaATAACAGCA
CTTCCCACAGCCCACATGCAGTGTACTTGAGGGAACAGCAGCTAGAGGCG
CGAACAGTAAGtgatgaagaaaaaaaacgCACGCGCACATTTCTGATCTA
TCACATGTGCGAGCGCGACGACGTCGTGGCCAAGAATTTAGCGCACGTGC
TCGCCAAAGTCGTCCGTGCTGATTGGCCCAGGCAATGGCCCGACTTCTTT
CAGCaactcctttccctccatccgttCCACGGTAGCGGAGCCATTAGCAA
GAACAATAATTTCCATCAGCAGGATGATTTGCAAACCCTCCGAGTCATTC
AAACTCTGTACCGGGTGATCAAAGAATTGGCAGGGAAGGGCCTGTTAGCC
GATAAGGCGGCTTTCCAAAGCATGGCTCGGTCACTCTTTCCCGTCGTCCA
CCGAGAACTTTGGCTGCCTCGCCTGCACCGATTGGTCGCGTTTCTGGAGC
AAGGTGACTACGGAGAACATGTCCTCAGGCGGGCGCGGGTCGTGAAGACT
TTGAGCAAAACATTGTGTTACCTCAGCGTGCAGCATGCTGGAGTCCTGGA
GCGCGACAGCCTGGAgtcgttcttcttccacgcatACTCTGCCTTCGGAC
CCTTGCTAACGGCCGAAAAGGGACTTTTGGCGCCCTTCGCcacggcgtcc
tccccggctGCGACATTGCCAGCGCCTCTTTCTGACCTGCTCATAGCGCT
GGCCAAAATCACCAAAAATCTCAGTTACACGGTCTCTGAGACGCAACAAC
GTTCTCCCTCAAGCCTGAGCAGCGccactctttccctcttcctccacttg
tTTTTTGAGCATGTCTGCAGtaccgcctcctgcccctccgaaCCCGTCCT
AGCCGCTTTGGTCTGGGACCCGGGTCTTGAAAGTTGTTCCAGAAAGTTCT
ATCTGAACGCCTGTGCCTTTTTGGGCAACTGCCTGTCCTGTCCCGACTAT
CAGTCCGGTGAGCACCATGTCATgctttccttgccccccacCAAGGATCT
TATGGATCTTTTCCggactttccctttcctATTCTCTATCCAGCTGGTCG
TTCCCAGGACGAAGGAAGCGTGCGGGTGGCCGCCGATTTCTTCACCGAGG
AGCGTGTCTTGCAGCTAA
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Synonyms
Publications