rna2198, rna2198 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2198
Unique Name	rna2198
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3018
Alignment location	CM002458.1:1140935..1142624 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100058g26.4264.mrna
Orig protein id	gnl\|cribi\|Naga_100058g26.4264
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1140935..1142624 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100058g26	gene2101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2198	rna2198-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28497.1	cds2190	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1140935..1142624+
coding sequence from alignment at CM002458.1:1140935..1142624+

mRNA sequence

>rna2198 ID=rna2198|Name=rna2198|organism=Nannochloropsis gaditana|type=mRNA|length=3018bp
TCCAGCCTTTTCGACGCACAGAGTCGCCGCATTCATCTTGTCGTTCGTTT
GGAGCATGGGCGTGGAGACGGGACCGTCGACTCGGCAGTCACCAGCTAAT
ATGACTCCTTCGTCGCAGCGCCAGCCACTACAGAAGCATACGCCACGCAA
AACGGACACAACAAGGACTGTTGTAGGCAGCGGTAACGGCAAGAAGCAAA
CACGCTCATCCAGTGCGTCTCCGACGAAATGCTCCCCGTCGTTCAAGCGT
CGAAAAACTGAAAGCGAGGGAGAAAGCGCCGTTCCTACAGTCTTGAGTCA
GAGCATCAACCGTCTTTCTCCCGGACCTCACCCATCCTCTCCCCACGACC
TAGTCTGCACCAAAAGCGAACGCGAGACGGGGGACCTCGATGACTTGAGG
GCGTTGAATGATCCAATACTCACCGCGTCCATCAAAGCCGCACAAGAAGA
AGCCGAGCGGGCCGTGGCAGTGGCGCGGGCGAAGGAGGACGAAGCGCGGA
AAAAGAGCGGCCCTGTGGTACCTCGTTTATTGCAAGGCGTCGGAGTGACG
GTAAACGACGCTCCCACAGCAGAAGAAGCATTGGAATCAACGAGTAATGC
CCCAGCTTCTCACGCCTCGTCCTCCTTGGATCCAGGATTGCCGATGAATG
GTGCCGCTACCAGCCGGAGCGGCATGCGTCGGACGGCACAGCTTGATACC
TTGTTGCAAAAAGCCTCGCACTTCAACAACTTCATCCTGGGCAAGCTGGA
GCATGGGGGCAAGGCCGCTGCCAGTGCCGCCCCCGTCGGGGCGGTGAAGT
CGAAGAAGAAACGGGGCCCGGGAAGGTCGTCGAACGAGGACGAAGCGGCG
GCTGCACAGGCGGCACACGACCGAGAGGAAGCCCTGGGAGACGCGGCCCG
CAAAATGGAGGGGAGAAAAGGAGGGGAGGGAAGCATGGAGCAGCCTGCCT
CGCTGAAGAACGGCGTGTTGAAGACTTATCAATTGGAAGGCCTGAACTGG
TTGAGCTCTCTGTGGATGAATGGATTGAATGGGATTCTCGCGGATGAGAT
GGGCCTCGGCAAGACGATCCAGGTCATCTCCCTCTTTGCCCTGCTCCGAG
AGAAGGGCGTGAACGGCCCCTTTCTGGTGGTGGCGCCGCTGGCCACCTTA
CCCAATTGGGTCCTTGAGGTCCGGAAATGGTTGCCTTCGGCCAGTGTTTG
TCTTTACCATGGCACGGTCCCGGAGCGGCAGGCGCTGCGGGAGGAGCAGA
TGCCGGTGGGGAGGGAGAGGGAGACGAGCAAGCTTTTCCCCATCGTGGTC
ACCTCGTACGAAATGGCTTCCATTGACCGGAAGCACCTCATGAGTTATCA
CTGGCGGTGGCTCGTTGTGGATGAGGGCCAACGGATCAAGAACCGAAACG
GTCGCCTCTTCAACGAATTGAAAGAGATTCCCTCCGAATCTCGTCTTCTC
CTCTCAGGAACCCCCATCCAGAATTCGCTCGAGGAGCTGTGGACCCTCCT
GAATTTCTGCCAGCCCGACATATTCGACGACCTGGGCGTGTTTCGCTCCT
GGTTCGGCTTCCAGAGCATCGGGAAGGACACCACGGTGGACGACATCATC
GACGAGGAGCATCGGGAGCGGGTGGTGACTAAACTTCACGAGGTCCTCCG
CCCCTTCCTCCTCCGGCGGATGAAAGCCGACGTGAACATCGATCTGCCCG
CCAAGAAGGAGCTGGTTGTCTATGCCCACATGTCTGAGATCCAGCACGAT
TACTACCGATTGGCTCAAGCAGGACAACTTAGGGAGGCACTCGTGCAACA
GGGCGTGCCGGATGCGGACAAGATCCGCCAAACGAACCCCCAGATGGTCC
TGCGCAAGATTTGCAACCATCCGTTCCTGGTCGCTGAGCCGGTAACGAAG
GCGGGCACGCCCATTGGAGAAGCCAACCCAAAGATCTTGATCGAGGCCTG
CGGGAAGCTGAAGCTCTTGGACAGGATGATGTGTCGGCTGCATGCGCAGG
GCCACCGCGTCCTCCTCTTTTCCCAGATGACGGAGATGCTCACGGTGCTG
GAGGACTACCTCCACTACCGTCAATGGAAGTATTGTCGGATCGACGGCTC
TGTCAAGGTAGACGCGCGTCAGGAGCAAATTGAAGCCTTTAATAAAGACC
CGTCGATTTTCTGCTTTCTTTTGTCCACTCGCGCGGGCGGTCTGGGCATC
AACTTGGCGGGGGCCGATACGGTGATCATCTACGACTCGGACTGGAACCC
GCATCGGGATGCGCAAGCCCAGGACAGGGCCCACCGGATCGGGCAGACCA
AGGCCGTGGCTGTGTATCGCATGCTGACGATCGGGAGCGTGGAGATCGAA
ATGATGGAGGCGCAGATCAGCAAGAAGAAGTTGGAGCGGCTCTCGATCAC
GGGCGGGGATTTCCGGCAGGCAGGCCGACGGAGCCGAGGAGACATAACGA
CCGAGGGTCTGCGGAGGCTGCTGGCGGACGACGTGAAGGACATTCAGAGG
AGGCATGGGGATGGGGGGCAGGAGGGGGGGAAGGAAGGAGGGAAGGGAGG
GGCAGAGGAGGATATCACGGAGGAGGAACTGGGGAAGATTTTGGACCGGA
AAGGGATGTTTGAGGAGGGAGGTTTGAGTGTAGACGGACGCATGTACGAC
TTGGTAGTGATCGCAGGAAGTGATCTGCTGAGCGGGATCAGCCAGGGCAA
TAGAGAGGGGGGGAGGGAATGAGGGAAGAGGGAAAAAGACGGTGGAAATA
GGAAGGAGTCTCCCTGTTGTTTGATACTTGTGGAGGGCCCGAAGTTGGTA
GGACGGGGGTTGGCGCGTGGAGATGTGTGCACGACAGAGGGGAAAGCACC
TTCAGGCGTGAGCAAAGACAGGAAAAAATAGAGAAAAGCACAACGGCATC
TTGATATGACGGACATGGTGAGTAACGATCCGGAAGAACAGGAGTTCAGG
GTTTCAATAATGATGCGCCTTCATTTTTTTGGGCCGAAAAATTGTGTAAT
GCGGGCAGGGCCTTTCCC

protein sequence of rna2198

>rna2198-protein ID=rna2198-protein|Name=rna2198|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MADAVNTIIDAVKEMVQDVGEKVGAAVKDALHVPDNFAPMVQTLKELVTS
GQKFASGEGSTEELNGLSTKLSSFSAMVDTLEDGPLKKMVLTLRDQAVSQ
LKDVKGSEKVGDSPSDPPAGCSYVFLLLDFLSSTEDSWRIPIISGLSFTL
LSKLEVLLVCAEIHAASAPSGQAFENIFALSFISF

mRNA from alignment at CM002458.1:1140935..1142624+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2198 ID=rna2198|Name=rna2198|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp|location=Sequence derived from alignment at CM002458.1:1140935..1142624+ (Nannochloropsis gaditana)
CCTATCAGCGAAGCCTAGGTGTCCAAACCCGATAGGCCGTAAATTGCTGC
GAAGTCACGCCtacagggaagggaaaacTGAAGCATTGGCCTTACAATAC
ATATTCTGAGGTTTTGACTCAGAAGTGGATAGATGGGGGTAAGCTGGATT
GGCTTGGTGGTGTTTTTTTGGCGTGAGCGGGCAGAGCGGACTTTGTTCTT
GCTGTTCCTTAGTACCTTTTCCTGTCTgatcctgtccctcctcatccgag
ATTTCGCCTCATTCAAAACCATTTTCTTCGCATTCCTGTGCTTATATCAT
ATCCCCTGACTGATGAGGATGTGGTCACTGTTGTGAGGTTGCGTGCATCC
GCATGCTTTGAGAAATGTTCTCGATTGGCTTGTGCGCCTTGAAGTCTCAA
ACTCATACCTGGCACTTAGCTGTCTTCCACGCACAGAGCATTGATTCATT
CTGTCCCATTTCTTCCATGAATCTAGTGTCTCTTAAAGCGTCAAGCAGTC
TTTGCTTTAAACCATGGCGGACGCGGTGAACACCATTATCGACGCCGTGA
AGGAAATGGTGCAAGATGTAGGGGAAAAAGTCGGTGCGGCAGTGAAGGAT
GCCCTCCATGTCCCGGACAATTTTGCGCCCATGGTACAAACCCTTAAAGA
GCTTGTCACTTCAGGGCAGAAGGTAAATGCGCCGCATTTTTCCAGAACAC
GGGTCTTGGATTGCAATCCGGGAGCAAACACATCTCTTACCAGGTTCGTT
TTTTACCTCAAAATTTAGTTTGCTtccggggaggggagcacgGAAGAGTT
AAACGGACTGTCCACAAAACTCAGTTCGTTCTCCGCCATGGTGGATACGC
TTGAAGACGGCCCCCTGAAGAAGATGGTGCTCACTCTGCGCGACCAGGCA
GTGTCCCAGCTGAAAGACGTGAAGGGCTCCGAGAAAGTCGGTGATAGTCC
CTCAGACCCCCCCGCTGGATGTTCATacgtctttcttctccttgattTCC
TTTCCAGTACCGAGGACTCGTGGCGTATTCCCATTATTTCCGGTCTTTCC
TTCACGCTACTGTCAAAGTTGGAAGTGCTCCTCGTCTGTGCGGAGATCCA
TGCGGCTTCGGCCCCGTCAGGCCAAGCATTCGAAAACATTTTTGCCCTGT
CTTTCATCTCTTTTTGAGTCCTTCTctactttccctccttcttttcagaT
CCTTAAAATTCTGGCCGTACTAGGGGAAGGAAATTCACAAGCCTCGACAG
AGACCCCCTCCGCTGCACAAGCACCACCCTCTGACGTccctgccgcctcc
cctgcGCAGGACACCGGCGTCGTTCCGCCTCCCAGCGCGACGGTGGTGCC
TCCCCCTAATGCGCCAATAGCCACAGGCACGACTTCGATGGATGCGACGG
TGTGACGGCATGGGAGCACATGGCCGGGGCGAAGAGACATCCAGGGGTGA
GGGCGATGACATGGCAAGAGGATTGTATATGGTTACACTCAGGGGGTAAA
AGGGTAGCAAGATCTTCAATATACAGCTGCGTATGCGTAAAAGGGCCAAt
acgaaggaaaagaaaagaagtaTGTTTCTGTGGGTGACGGAGGGGCGCAG
AGCCGGAGTGGGATGGGCGTTTGGGCGATCCCCGCCTCGGCCATTCGATT
TTCATGCGTGGCCCCATCCTTTGTGCTCGTTGTTTTATGT

Coding sequence (CDS) from alignment at CM002458.1:1140935..1142624+

>rna2198 ID=rna2198|Name=rna2198|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002458.1:1140935..1142624+ (Nannochloropsis gaditana)
ATGGCGGACGCGGTGAACACCATTATCGACGCCGTGAAGGAAATGGTGCA
AGATGTAGGGGAAAAAGTCGGTGCGGCAGTGAAGGATGCCCTCCATGTCC
CGGACAATTTTGCGCCCATGGTACAAACCCTTAAAGAGCTTGTCACTTCA
GGGCAGAAGTTTGCTtccggggaggggagcacgGAAGAGTTAAACGGACT
GTCCACAAAACTCAGTTCGTTCTCCGCCATGGTGGATACGCTTGAAGACG
GCCCCCTGAAGAAGATGGTGCTCACTCTGCGCGACCAGGCAGTGTCCCAG
CTGAAAGACGTGAAGGGCTCCGAGAAAGTCGGTGATAGTCCCTCAGACCC
CCCCGCTGGATGTTCATacgtctttcttctccttgattTCCTTTCCAGTA
CCGAGGACTCGTGGCGTATTCCCATTATTTCCGGTCTTTCCTTCACGCTA
CTGTCAAAGTTGGAAGTGCTCCTCGTCTGTGCGGAGATCCATGCGGCTTC
GGCCCCGTCAGGCCAAGCATTCGAAAACATTTTTGCCCTGTCTTTCATCT
CTTTTTGAATGGCGGACGCGGTGAACACCATTATCGACGCCGTGAAGGAA
ATGGTGCAAGATGTAGGGGAAAAAGTCGGTGCGGCAGTGAAGGATGCCCT
CCATGTCCCGGACAATTTTGCGCCCATGGTACAAACCCTTAAAGAGCTTG
TCACTTCAGGGCAGAAGTTTGCTtccggggaggggagcacgGAAGAGTTA
AACGGACTGTCCACAAAACTCAGTTCGTTCTCCGCCATGGTGGATACGCT
TGAAGACGGCCCCCTGAAGAAGATGGTGCTCACTCTGCGCGACCAGGCAG
TGTCCCAGCTGAAAGACGTGAAGGGCTCCGAGAAAGTCGGTGATAGTCCC
TCAGACCCCCCCGCTGGATGTTCATacgtctttcttctccttgattTCCT
TTCCAGTACCGAGGACTCGTGGCGTATTCCCATTATTTCCGGTCTTTCCT
TCACGCTACTGTCAAAGTTGGAAGTGCTCCTCGTCTGTGCGGAGATCCAT
GCGGCTTCGGCCCCGTCAGGCCAAGCATTCGAAAACATTTTTGCCCTGTC
TTTCATCTCTTTTTGA

Synonyms

Publications