rna2196, rna2196 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2196
Unique Name	rna2196
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2024
Alignment location	CM002458.1:1134151..1136336 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF72
Orig transcript id	gnl\|cribi\|Naga_100058g24.4254.mrna
Orig protein id	gnl\|cribi\|Naga_100058g24.4254
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1134151..1136336 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100058g24	gene2099	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2196	rna2196-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28487.1	cds2188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1134151..1136336+
coding sequence from alignment at CM002458.1:1134151..1136336+

mRNA sequence

>rna2196 ID=rna2196|Name=rna2196|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp
AAGTACAACTTGCATACGAAGGATCAAATACAATCAACAATGCATTTCGA
TACTGACCAACTCACCGGGGGGGTAAAAGCATCGTCGCCAATGAGGATAC
GTATATCCTGCGGTTCCCAGATAAAACTGGCCGGGGGAGTCTGCAGAGGA
GAGTACCACCTCACCACTTGTCGTCATGGCTAAAAATGTCTTGGATAATA
TGTTAGACTCTTAGCCACTATCGACACAGGAACAAGAATTCAGTTCGCTT
TGGCGAGGGGGGAGGTTAACAAGCCGGCTTCAAGCAATGTGAGAACAAAG
TGCAGGGCACGCACACGTGATGGAGCGAAACATACGACAACTGTGCCATG
TACGGTATCGACGACAGCGTAAAGAGGCCCTCCTGAATCTCGACTGTTTC
CGCAGACTTTCATGGACGCGAACACTTTAGTAAGCCAACAGATGCTTCAG
GGCCTTGGCGTTCTTCGCGCTCTTTTATAGCCTGTTTTCTGCATGCTTTA
CCATGACATGGGAGGCCGCAAAAAGATGTTTCCCGCCTTCCTCCGGTGTA
CCAAACAGTGCATTGCCTAACCTTTGCATGGTTGGACCGTCACTTTGTGC
TTCTGATGTCGTGATCTGCTTGCCATGTCTTCTTCATCTATCTCCCTCAA
CATTTACCCACGCGCCCTCTGCGCTTCTACCTTTCCTCCTTGCAGAGAGT
ACGGCCACGCTTTGAATCATGTCTTACGGTGGCTTCGAGTATGGTGCACC
TGCAGACACATATGGAGGCGGTGGCGGAGGTTTTATGCCGGGAGTTGGTG
ATTACCAAGGACAAGGAATGGGCTTCGGGTCGCCAGGAGGGGGTGGGCCT
GGAGGAGGGCCAGCAAAACCGAGTAAAGAGCAGAAAACTTTGCTGCCTCT
GACGGTTCATCAAGTCTTAAATGCAGGACAGGATGAGCCGGATGCCCCGA
CCTTCAAAGTGGATGGATGCGACCTGCACCAGGTCAAAATCATAGGGCAA
ATCCTGGACATTGTAGAAACCGCGGTGATGCGGGCCTATAAAATCGACGA
CGGCACGGGGATTCTGAGTTGCCATGTGTTTTCGGAACAGGACGAGAGTG
AATATGCACAAGAGCGTCGAAGTTATTGCCAAAAAGGGGCCTACGTGGGT
GTGGTTGGCCAGGTCCGGGACTACCAAGGAAAGCGCCACGTGAGTGTGCA
TGACATGCGGGTGGTGAAAGACGGCAATGAAATCACCTACCATCTGCTCG
AGGCCATCTGGGTGCACTGTCAGAACACTAAAGGGCGCATGCTCAAGCCC
GGGGCGGCCGTGGGTAGTGGGATGGGCCTGGGAATGGGGATGGGCATGGG
CGGGTATGGTGGCGTGAGTGGGAAGATGATGATGGCCGGTCCGGGAGGGA
TGAACGGAGGCACGAACGACGTGCACGAAGCCGTGCTCAATGCCTTCATG
GAGTACAGTATGGGAGACAATGGGGCAGAGCTGGCCACGGTCGTGCGGGC
TTTGTCGGGGAAACTTTCGGCGAACCAAATTCAACAGGCGACGGAATTTT
TAGCGCAGGAGGGACGGCTGTACACGACTTTGGATGAAAACCACTACAAG
CCTACATAGAAGGTGGATCAGGTTAGATTTTTGTGAGGGATTCGGTCGAA
AAGATGGCGGGGCAATGCGGGGGAGAAGAGGGGTGGGACCCGTGGGGGTG
GTGTAAGGATGCTTTGTTGGGAAGGGTGCGCGCGAGGAAGAGTAAGGTTA
GGGTTAGGGTTACCCTAAGCGGTGGGGGGAATGGAGATCGACAAAGTGGT
TGTCAGAGGGCGTTTGGCAGGAAGGTGAAAGTGACCGTGGGACGGTGCAC
ACAAGAGGGAAGGCAGGGAGGGATGGCAGGCGAGGAATCAGCACGACAAC
AATCGACATAGCCACAATCAAGCTACCTCGGAGGCAGACAGGTCGCACGA
AAGAAATTGAAATACTAGGACGTATCGCGTCAGCGATGGAAATGAAGGAT
CTTATGGAAATTCTGTGTGTTTCC

protein sequence of rna2196

>rna2196-protein ID=rna2196-protein|Name=rna2196|organism=Nannochloropsis gaditana|type=polypeptide|length=495bp
MTTSGEVVLSSADSPGQFYLGTAGYTYPHWRRCFYPPGLPHAKELRFYAQ
TLNTCEVNTTFYGIPSEATMTSWIEQVRPVNPNFRFALKMKKTVTHGGEA
NIDSDINDAKPSVPAAANPTSPAAAGSRLKEHYSHPLHPAALAHELPLFF
KRASSLPPSMRGPILFQFPPSYTCDLSSLHRLADALDMYVSRPTPTSSPQ
WRCALEFRHPSWFCPAVFSFLHVQEWALVLHALPKQQQHEQALAAEVARP
ITSSHFVYLRLHGLKEEHAWDYTREELDEYVRNIKKWREGEGESGVAGGR
EEEEEGEFTGGRDVYVYFLNDAEGRAPENALLMGQMVAEAMGRGEKAPRK
PRAGVAITKYFGGRTNEGAEGESREDEALQRTTVGFQSERQKLGGKKRAR
LEACGRDFQEGEGNAGDTGGRSEERRGRVEREETVGTRSGPRDLLRSASS
SELEEDTGGKKGKDEGASDATSKNMGPSTSGKGPARITQFFGPKK

mRNA from alignment at CM002458.1:1134151..1136336+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2196 ID=rna2196|Name=rna2196|organism=Nannochloropsis gaditana|type=mRNA|length=2186bp|location=Sequence derived from alignment at CM002458.1:1134151..1136336+ (Nannochloropsis gaditana)
CATCTGTTGGCTTACTAAAGTGTTCGCGTCCATGAAAGTCTGCGGAAACA
GTCGAGATTCAGGAGGGCCTCTTTACGCTGTCGTCGATACCGTACATGGC
ACAGTTGTCGTATGTTTCGCTCCATCACGTGTGCGTGCCCTGCACTTTGT
TCTCACATTGCTTGAAGCCGGCttgttaacctcccccctcgccaaaGCGA
ACTGAATTCTTGTTCCTGTGTCGATAGTGGCTAAGAGTCTAACATATTAT
CCAAGACATTTTTAGCCATGACGACAAGTGGTGAGGTGGTACTCTCCTCT
GCAGACTCCCCCGGCCAGTTTTATCTGGGAACCGCAGGATATACGTATCC
TCATTGGCGACGATGCTTTTACCCCCCCGGTGAGTTGGTCAGTATCGAAA
TGCATTGTTGATTGTATTTGATCCTTCGTATGCAAGTTGTACTTTGATCC
AAAATACCTTACATTTATATGTTGTGATGTCATTTGGGCCTATTTGGACG
TGCGGGAAACGAACAGGCCTTCCCCACGCCAAGGAGCTAAGATTTTACGC
CCAAACGTTGAACACATGCGAGGTCAACACCACCTTCTACGGTAAGACTA
CAAAGGCATCCAAGATTTGTTGTATATTGAGTTCATGGAGATAATTGATC
AGAGTGTCCTTGGGAACTAAAtatgaggggggaaaaggggaataGAAGTA
TAGCCATCCACGTCAACTAGCACTGGATAAAGTCTTTTGATCAGGCTCCC
TCACATGCCACAAATGCGAAATGGCAACAATCGTGAGTGGATAACTGAAT
GTGACCTTTTCGACGGTGCCCTTCACGACAGGCATACCCAGCGAAGCCAC
AATGACGTCCTGGATCGAGCAAGTCCGGCCTGTCAATCCCAATTTTCGCT
TCGCGCTCAAAATGAAGAAGACGGTTACGCACGGTGGCGAAGCAAATATT
GACAGCGACATTAACGACGCAAAACCTAGCGTTCCCGCTGCAGCTAACCC
GACGTCGCCCGCTGCTGCCGGGAGCCGTCTTAAGGAGCACTattcccatc
ctctccaccctGCCGCCCTTGCCCACGAACTTCCACTCTTCTTCAagcgt
gcctcctccttgccgccaTCCATGCGCGGGCCCATTCTATTCCAATTCCC
GCCTTCGTACACGTGCGATTTGTCCTCCCTTCACCGACTCGCAGATGCGC
TGGACATGTACGTGTCCCGCCCGACCCCTACCTCTTCTCCCCAATGGCGC
TGCGCCTTGGAATTTCGACATCCCTCCTGGTTCTGCCCGGCAgtcttctc
ttttctccaCGTCCAAGAATGGGCGCTTGTCCTGCACGCGCTTCcaaaac
agcagcagcacgagcaggcgctggcggcaGAGGTAGCGCGGCCCATAACC
TCCTCTCACTTCGTATACCTGCGCCTGCACgggctgaaggaggagcacgc
TTGGGATTATACGCGGGAGGAACTTGATGAATACGTGCGGAACATCAAGA
Aatggagagaaggggagggagagagcggggtggcgggagggagggaagaa
gaggaggagggagagttcacaggcgggagggacgtaTACGTATACTTTTT
GAACgatgcggagggaagagccCCGGAGAATGCCTTATTAATGGGGCaga
tggtggcggaggcgatggggcgGGGCGAGAAAGCGCCCCGCAAGCcaagg
gcgggcgtggcgatCACGAAATACTTCGGAGGTAGGACGAatgagggagc
ggaaggagaaagtaGAGAAGATGAGGCGCTGCAGCGGACCACGGTAGGGT
TCCAAAGCGAAAGACAAAaattgggggggaagaaacggGCAAGGCTAGAG
GCCTGTGGGCGAGATtttcaggaaggagaggggaatgCCGGAGAtacagg
agggagaagcgaggaaaggagaggacgggtggagagggaggagactgTTG
GGACACGTTCTGGTCCCCGAGACCTGCTGCGAAGTGCGTCATCCTCGgag
ctcgaggaggacacaggtggcaagaaagggaaggacgagggggccTCGGA
CGCGACCAGCAAGAACATGGGTCCAAGCACATCAGGGAAAGGCCCTGCCC
GCATTACACAATTTTTCGgcccaaaaaaatgaaggcgCATCATTATTGAA
ACCCTGAACTCCTGTTCTTCCGGATCGTTACTCACC

Coding sequence (CDS) from alignment at CM002458.1:1134151..1136336+

>rna2196 ID=rna2196|Name=rna2196|organism=Nannochloropsis gaditana|type=CDS|length=4464bp|location=Sequence derived from alignment at CM002458.1:1134151..1136336+ (Nannochloropsis gaditana)
ATGACGACAAGTGGTGAGGTGGTACTCTCCTCTGCAGACTCCCCCGGCCA
GTTTTATCTGGGAACCGCAGGATATACGTATCCTCATTGGCGACGATGCT
TTTACCCCCCCGGCCTTCCCCACGCCAAGGAGCTAAGATTTTACGCCCAA
ACGTTGAACACATGCGAGGTCAACACCACCTTCTACGGCATACCCAGCGA
AGCCACAATGACGTCCTGGATCGAGCAAGTCCGGCCTGTCAATCCCAATT
TTCGCTTCGCGCTCAAAATGAAGAAGACGGTTACGCACGGTGGCGAAGCA
AATATTGACAGCGACATTAACGACGCAAAACCTAGCGTTCCCGCTGCAGC
TAACCCGACGTCGCCCGCTGCTGCCGGGAGCCGTCTTAAGGAGCACTatt
cccatcctctccaccctGCCGCCCTTGCCCACGAACTTCCACTCTTCTTC
AagcgtgcctcctccttgccgccaTCCATGCGCGGGCCCATTCTATTCCA
ATTCCCGCCTTCGTACACGTGCGATTTGTCCTCCCTTCACCGACTCGCAG
ATGCGCTGGACATGTACGTGTCCCGCCCGACCCCTACCTCTTCTCCCCAA
TGGCGCTGCGCCTTGGAATTTCGACATCCCTCCTGGTTCTGCCCGGCAgt
cttctcttttctccaCGTCCAAGAATGGGCGCTTGTCCTGCACGCGCTTC
caaaacagcagcagcacgagcaggcgctggcggcaGAGGTAGCGCGGCCC
ATAACCTCCTCTCACTTCGTATACCTGCGCCTGCACgggctgaaggagga
gcacgcTTGGGATTATACGCGGGAGGAACTTGATGAATACGTGCGGAACA
TCAAGAAatggagagaaggggagggagagagcggggtggcgggagggagg
gaagaagaggaggagggagagttcacaggcgggagggacgtaTACGTATA
CTTTTTGAACgatgcggagggaagagccCCGGAGAATGCCTTATTAATGG
GGCagatggtggcggaggcgatggggcgGGGCGAGAAAGCGCCCCGCAAG
CcaagggcgggcgtggcgatCACGAAATACTTCGGAGGTAGGACGAatga
gggagcggaaggagaaagtaGAGAAGATGAGGCGCTGCAGCGGACCACGG
TAGGGTTCCAAAGCGAAAGACAAAaattgggggggaagaaacggGCAAGG
CTAGAGGCCTGTGGGCGAGATtttcaggaaggagaggggaatgCCGGAGA
tacaggagggagaagcgaggaaaggagaggacgggtggagagggaggaga
ctgTTGGGACACGTTCTGGTCCCCGAGACCTGCTGCGAAGTGCGTCATCC
TCGgagctcgaggaggacacaggtggcaagaaagggaaggacgagggggc
cTCGGACGCGACCAGCAAGAACATGGGTCCAAGCACATCAGGGAAAGGCC
CTGCCCGCATTACACAATTTTTCGgcccaaaaaaatgaATGACGACAAGT
GGTGAGGTGGTACTCTCCTCTGCAGACTCCCCCGGCCAGTTTTATCTGGG
AACCGCAGGATATACGTATCCTCATTGGCGACGATGCTTTTACCCCCCCG
GCCTTCCCCACGCCAAGGAGCTAAGATTTTACGCCCAAACGTTGAACACA
TGCGAGGTCAACACCACCTTCTACGGCATACCCAGCGAAGCCACAATGAC
GTCCTGGATCGAGCAAGTCCGGCCTGTCAATCCCAATTTTCGCTTCGCGC
TCAAAATGAAGAAGACGGTTACGCACGGTGGCGAAGCAAATATTGACAGC
GACATTAACGACGCAAAACCTAGCGTTCCCGCTGCAGCTAACCCGACGTC
GCCCGCTGCTGCCGGGAGCCGTCTTAAGGAGCACTattcccatcctctcc
accctGCCGCCCTTGCCCACGAACTTCCACTCTTCTTCAagcgtgcctcc
tccttgccgccaTCCATGCGCGGGCCCATTCTATTCCAATTCCCGCCTTC
GTACACGTGCGATTTGTCCTCCCTTCACCGACTCGCAGATGCGCTGGACA
TGTACGTGTCCCGCCCGACCCCTACCTCTTCTCCCCAATGGCGCTGCGCC
TTGGAATTTCGACATCCCTCCTGGTTCTGCCCGGCAgtcttctcttttct
ccaCGTCCAAGAATGGGCGCTTGTCCTGCACGCGCTTCcaaaacagcagc
agcacgagcaggcgctggcggcaGAGGTAGCGCGGCCCATAACCTCCTCT
CACTTCGTATACCTGCGCCTGCACgggctgaaggaggagcacgcTTGGGA
TTATACGCGGGAGGAACTTGATGAATACGTGCGGAACATCAAGAAatgga
gagaaggggagggagagagcggggtggcgggagggagggaagaagaggag
gagggagagttcacaggcgggagggacgtaTACGTATACTTTTTGAACga
tgcggagggaagagccCCGGAGAATGCCTTATTAATGGGGCagatggtgg
cggaggcgatggggcgGGGCGAGAAAGCGCCCCGCAAGCcaagggcgggc
gtggcgatCACGAAATACTTCGGAGGTAGGACGAatgagggagcggaagg
agaaagtaGAGAAGATGAGGCGCTGCAGCGGACCACGGTAGGGTTCCAAA
GCGAAAGACAAAaattgggggggaagaaacggGCAAGGCTAGAGGCCTGT
GGGCGAGATtttcaggaaggagaggggaatgCCGGAGAtacaggagggag
aagcgaggaaaggagaggacgggtggagagggaggagactgTTGGGACAC
GTTCTGGTCCCCGAGACCTGCTGCGAAGTGCGTCATCCTCGgagctcgag
gaggacacaggtggcaagaaagggaaggacgagggggccTCGGACGCGAC
CAGCAAGAACATGGGTCCAAGCACATCAGGGAAAGGCCCTGCCCGCATTA
CACAATTTTTCGgcccaaaaaaatgaATGACGACAAGTGGTGAGGTGGTA
CTCTCCTCTGCAGACTCCCCCGGCCAGTTTTATCTGGGAACCGCAGGATA
TACGTATCCTCATTGGCGACGATGCTTTTACCCCCCCGGCCTTCCCCACG
CCAAGGAGCTAAGATTTTACGCCCAAACGTTGAACACATGCGAGGTCAAC
ACCACCTTCTACGGCATACCCAGCGAAGCCACAATGACGTCCTGGATCGA
GCAAGTCCGGCCTGTCAATCCCAATTTTCGCTTCGCGCTCAAAATGAAGA
AGACGGTTACGCACGGTGGCGAAGCAAATATTGACAGCGACATTAACGAC
GCAAAACCTAGCGTTCCCGCTGCAGCTAACCCGACGTCGCCCGCTGCTGC
CGGGAGCCGTCTTAAGGAGCACTattcccatcctctccaccctGCCGCCC
TTGCCCACGAACTTCCACTCTTCTTCAagcgtgcctcctccttgccgcca
TCCATGCGCGGGCCCATTCTATTCCAATTCCCGCCTTCGTACACGTGCGA
TTTGTCCTCCCTTCACCGACTCGCAGATGCGCTGGACATGTACGTGTCCC
GCCCGACCCCTACCTCTTCTCCCCAATGGCGCTGCGCCTTGGAATTTCGA
CATCCCTCCTGGTTCTGCCCGGCAgtcttctcttttctccaCGTCCAAGA
ATGGGCGCTTGTCCTGCACGCGCTTCcaaaacagcagcagcacgagcagg
cgctggcggcaGAGGTAGCGCGGCCCATAACCTCCTCTCACTTCGTATAC
CTGCGCCTGCACgggctgaaggaggagcacgcTTGGGATTATACGCGGGA
GGAACTTGATGAATACGTGCGGAACATCAAGAAatggagagaaggggagg
gagagagcggggtggcgggagggagggaagaagaggaggagggagagttc
acaggcgggagggacgtaTACGTATACTTTTTGAACgatgcggagggaag
agccCCGGAGAATGCCTTATTAATGGGGCagatggtggcggaggcgatgg
ggcgGGGCGAGAAAGCGCCCCGCAAGCcaagggcgggcgtggcgatCACG
AAATACTTCGGAGGTAGGACGAatgagggagcggaaggagaaagtaGAGA
AGATGAGGCGCTGCAGCGGACCACGGTAGGGTTCCAAAGCGAAAGACAAA
aattgggggggaagaaacggGCAAGGCTAGAGGCCTGTGGGCGAGATttt
caggaaggagaggggaatgCCGGAGAtacaggagggagaagcgaggaaag
gagaggacgggtggagagggaggagactgTTGGGACACGTTCTGGTCCCC
GAGACCTGCTGCGAAGTGCGTCATCCTCGgagctcgaggaggacacaggt
ggcaagaaagggaaggacgagggggccTCGGACGCGACCAGCAAGAACAT
GGGTCCAAGCACATCAGGGAAAGGCCCTGCCCGCATTACACAATTTTTCG
gcccaaaaaaatga

Synonyms

Publications