rna2192, rna2192 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2192
Unique Name	rna2192
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3182
Alignment location	CM002458.1:1126952..1128667 +

Link to JBrowse

Properties


Property Name	Value
Product	Essential protein Yae1
Orig transcript id	gnl\|cribi\|Naga_100058g20.4269.mrna
Orig protein id	gnl\|cribi\|Naga_100058g20.4269
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1126952..1128667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100058g20	gene2095	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2192	rna2192-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28502.1	cds2184	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1126952..1128667+
coding sequence from alignment at CM002458.1:1126952..1128667+

mRNA sequence

>rna2192 ID=rna2192|Name=rna2192|organism=Nannochloropsis gaditana|type=mRNA|length=3182bp
CAAGCCTAAAATAGCAAAGAGATATTCGTTAGGAGGGATACTTTTGATCA
TGAAACCTAAGAGTGGATTTACCACACAAGGAGGCTGTCCCGGATGAGGG
ACGGAACAGTGGGAACATGAAACGAGGATGCATCGCAGAAGTATCCATGG
CCCACACTTCCCACCATGCCTATATGCTTCGTGAAGGAATTATTAAGCCA
AGATGTGCACCAGAGTTTCCTCGAAATGCATGAGTGGAAGCTTGTAAAGA
CCTCTGCGGCTGCACATGGAAGTTTAGACAATTTTCATGCGGCTTACCTC
CTCACCCTCTATCGTCGCCGTCGCCACTCAAGCACTTCCGCTCGAATACA
CGCTTATAACCCTTCAAAAAAATTAACCAGTCATTTCAAGACACGACAAC
CACTAAGTATGGTAAAGTACACCGAAGATGGCCTTGTCCTGACGCTGGAC
TCAGATGATGAGGAGGTAGTAGCTGAAGACCGAGAGGAAGGGGATGCGGA
AGAGGCCAAGGCTGCCAAGATTACCCGCCCTGAATCGGTCGATGCAAAAA
AAACGAGACAAAAACAGCTGAAGAAGAAGGAAAAGAAACAGAACGGGGTG
GCAGAGAGGAAGAAGGCGTCAGAAATGGACCCTTCGTTTGCGTTTGAGGA
GGCAGATGACGGTTTTGGCGGCAAGGCACAGTGGGACTTCAAGGAGGCAT
TGGTCAAGTTGGGTCTGGGTGTGGCGAGAGAGGGGACGAGTGAGATAGAA
AAGCAATCAGCGGCCGTAGTGGAAGGTGACAAGGATGAGGGGGAGGGAGA
AAGGGAGGAGGAAGACGAGGGATTGGTGGCGGATGCCGTCAAAGATTTAA
ACACGGAGGAGGCGCTGGTGAAAGCAGCGCGGCGAAAACAACGTTTGGAG
GACAAGGAAGGGCGATTGCAGGAAAGGGAACGGCGGAAACTGGAAGAACG
GCGAAAAGGGTCGGGAAACGACGGCTTGCCTGTGCCGGAAGACACGGACG
CAGACCCAAAAGCCAAGGAATTCTTTCAGGAGCTCAGCGACGACCTGCGC
ATCCAGGCGTCGGGTCCCGGGGGCACTGTTCTCTTCTCCCAACTCAACCT
TTCCCGCCCGCTCCTGCGGGCCATCGAGTTCCTGGGTTACGTCAACCCCA
CCCCCATTCAAACCGCCGTCATCCCCGTCGTGCTCGCGGGAAAGGACGTA
TGTGCTTCGGCCGTGACGGGTTCAGGCAAGACTGCAGCTTTCGCCCTTCC
GATCCTGGAACGCCTTTTGTTTCGGCCTAAACGGGTGGCGGCCACGCGTG
TCTTGGTCCTGTCCCCGACCCGGGAGCTTGCCGTACAGACCCACTTGATG
CTGAGCCGTTTGAGCCAGTACACGGATATGGTCACCTGCCTGGTGGTGGG
CGGCAGCAAGAACATGCGGGCCCAGGAAAACGAGCTTCGGGCCCGGCCAG
ACATTGTCGTGTGTACGCCGGGGCGGATGCTGGATCATTTGATGAACTCA
CCCGGTGTCTCTGTGGACGATCTGGAGATCTTAGTGCTCGACGAGGTTGA
CCAGCTCGTCGACCTTGGGTTTGCGGCGGAGGTCGAGTCCTTGGTGAAAG
AGTGCCCCCGCCAACGCCAAACGTTGTTGTTCTCGGCCACCATGACGGCT
AAAGTGGATGCCTTGGCAGTCCTGGCTTTGAACCGGCCTGTCCGGGTCCG
GGTGGACGTCTCCCTCCAGGTCGCCCCCCGTTTGGAGCAGGAATTTGTGC
GGGTGCGAGGCAAAGGCAGCGAGGAGCACCGCCACGCCATCCTCCTGGCT
TTGCTGGCTCGTACCTTCAAGACCCGGACCTTGGTGTTTTGCAACACGAA
GGCCGATGCCCATAGGACTCGACTGTTGCTGGAGCTCTCGGGTATCAAGG
CGGTGGAGTTGCATGGGAACTTGACGCAAGCCGAACGCTTGGAGAGCCTC
CTTTGCTTCAAAGAGGGCAAGGCCGACGTGCTTGTGGCAACGGACTTGGC
GGCCAGGGGCCTGGATATTTCGGGGATTGCGGCGGTGATCAACGCAGAAA
TGCCACGGACGCGCGCGACCTATGTACATCGGGTGGGGCGGACGGCACGC
GCCGGTTGCGGAGGAAAAGCGGTGAGCCTGGTCCCGGATGCCCTGCGTTT
GTTCATGAAACAAATAGTCCAGGACGTGGAGGATACGTCGACGGTCAAAT
CCCGGGTGGTGCCGCCCCCGGTCCTGGCCCACTACGAGGCCAAAGTCTCG
GAGCTGCAGGCGGCCATCGAAAGTCGGTTGAAGGAAGAGGCGGCGGAGCG
TCAGGCCCGGTGGGCGGAGATGGAAGCCGAACGTGCCCAGAATCTGGTGG
AGCATCAGGAGGAGATCCTGCAACGCCCAGCCAAGCAATGGTTTCAGAGT
AAGGCTGAAAAAGAGGCGGTCAGGACGGCGGCCGCCGCCGAGAAAGCAGC
GGCACAAGGGAATGGAAATGGGAAGCTCTCTGCTTTCGGGACCCAGCGTG
CATCGCTCTCCTCCACCATGAACTTAACCAGAAAAGAGAAACAAGCCTTG
GAGGAATCGGCGAAGAAGAAACCGCACCGATTGAATCGGGCCAAGCGCCG
GCGGATGGAGATGTTGAAGGAAGAGGAAGGGGAACGGAGGGAAGCGGTGG
AGCAGAGTATGGAGGAGGACGGTGAACTGCCCAAGAAACGGAAGCTGGCC
ACAATGACGTCGCAGAAAAGTGTAGCGAGGGAGGCTAAAAGAGCGGCCCA
ACCGACCCGTGTCCGTGCCGAGGGGAGGGCAGCGGGAGCCATTCGGGTCA
AAACCGCACGTGGAAGTGGGAGTGCGGGCACTTTGCAGTTGACAGAAGGT
TTCGACAAAGAACTGGACACCGTGTACCGGAAAAAAGGAAGGGAGGAGCC
AGGGGGAGGGACAGGGCCCCATCAGAGAGACGAAGGGATGGCTGGGAGAG
AGAGGGAGAGTGCCTACAAGTTCCGCGGCTTGTCGGCGACTTCGGCGGCA
GGTGGAGGCCTTCGTAAGCGGAGCAAACCAAGCCATCATGCTTTCAAAAG
TAAAAGCAAACATCGGCGCCGTTGAGAAGACATGCGGGGCGGAGGATGCT
GGACCGCTGGAAAGGCGCCCTCTCGAATCCGACGATGAAAGTAAACAAAG
CAAAAAAATGACCCAATGGGATGACTCCAGTC

protein sequence of rna2192

>rna2192-protein ID=rna2192-protein|Name=rna2192|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGK
AKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMM
DTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSML
GVSVKFSLHKSGRISDGETAGGVGELSF

mRNA from alignment at CM002458.1:1126952..1128667+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2192 ID=rna2192|Name=rna2192|organism=Nannochloropsis gaditana|type=mRNA|length=1716bp|location=Sequence derived from alignment at CM002458.1:1126952..1128667+ (Nannochloropsis gaditana)
GCATGAAAATTGTCTAAACTTCCATGTGCAGCCGCAGAGGTCTTTACAAG
CTTCCACTCATGCATTTCGAGGAAACTCTGGTGCACATCTTGGCTTAATA
ATTCCTTCACGAAGCATATAGGCATGGTGGGAAGTGTGGGCCATGGATAC
TTCTGCGATGCATCCTCGTTTCATGTTCCCACTGTTCCGTCCCTCATCCG
GGACAGCCTCCTTGTGTGGTAAATCCACTCTTAGGTTTCATGATCAAAAG
TATCCCTCCTAACGAATATCTCTTTGCTATTTTAGGCTTGCTTTGGGCCC
TGTGTGTCGACCGTTGTCTGGCGTCGGTCGCAAAGTAGATTCTCCGTCAC
ATCAGACAACGGTCCTTTCGACCCCACCGCCCATTACGCGCATGACAAAT
GCtgaggaagcgaggcatACAAGCAGTTTGGATCTTGATGCAGTAGTACA
TTTGGATGAGACCTGGTATCAGGAAGGTTAccaggaagggggcgaggcgg
gaaggaaacgaggcCGTCGAGAGGGACGCGCAGTTGGGTACGTCCGCACT
ATAAGCAGAAAAAGTCTCATGAGAGGGAGGTTGTCCGGGGGCTTTACGCG
TAGGGGGAAATTATAACCTTTCGCTTCAAAAGCGAAATAGTATCAATGGG
AGTTTTGTTTGAAGCATGGAAGTCAAGAGATGAGGCGTCTGATggacaag
aagagggagaatcAACGAGGTTTCGACGTGAGGTTTATGAAGTTATAGGT
TCGGATAGGAGATGCGATATAGAGCATTAACAAAGGAAGGCAGTtatcct
cttttcttccccttaTTTGCACAGCAAAGCTAAGGGTTTTGAAATTGGAT
GCGAACTGGGGTTCTACAAGGCATGCAGCCAGACCTGGTTGTTTGTCATT
AAAGACAGTATtacaggagagggagaaaaagggaggagcaaggaatTTGG
TGAGATCGCGGCTGCAAAGGCTATGATGGACACAACGGCTGTGCATAGGT
TCGTTTTTAGAGCTTGTGTGAGTAAGTTGGGAGTATTTTTGTTAAAAATG
TAAATGAAGTATTCTCTCGCGCGTAGAGAGCTGATCTAAATTTAGATGTG
GTCTTGAGATCAACATTTTTCCTAACGAATGGACAGGGCCATCAGGACAT
TAGAGGGCATCATAAAGCTCGTGCAGGACTTTCCTCGACAGGTGTGTTTA
CATCGGAATCGATATATTTCGGAGTTTGCACAGCCATTGCAGTTCAGGAA
ATGTGCACGAAATGTTGATATTTTCAAATGCATGCCGTTCCTTTCACAAC
ACCCCGCAGAACGTTGCTGATGTTGATATGGCCGCGCACGTACAACGGCT
TCGAGCCAAGTTTCGAGCGGTTACTTCCATGTTGGGTGTCTCCGTCAAAT
TTTCTTTGCATAAGTCAGGCCGGATATCGGATGGGGAAACTgcgggcggg
gtgggagaaCTGTCCTTTTGAAACATAATTATACAGATGAAAAGCAAGAC
TAGGTGGGAATACATGAGACTGCGCTGGTGTACATTACATGGTCGGTAGA
AAAGTGCAGTCATTGATGAATATGATTGGAAAATCTTTACAAGACGACTA
GATGCAGAATTTCCATAAACAAATTCGAGAAGATCGCATTATTTCTTTCG
GCTCTTCTTTTCAGATTTGAACTTTTTGCTTTGCCTGTCTTGTGAATCTT
TACACGCCGCAAACGC

Coding sequence (CDS) from alignment at CM002458.1:1126952..1128667+

>rna2192 ID=rna2192|Name=rna2192|organism=Nannochloropsis gaditana|type=CDS|length=2148bp|location=Sequence derived from alignment at CM002458.1:1126952..1128667+ (Nannochloropsis gaditana)
ATGACAAATGCtgaggaagcgaggcatACAAGCAGTTTGGATCTTGATGC
AGTAGTACATTTGGATGAGACCTGGTATCAGGAAGGTTAccaggaagggg
gcgaggcgggaaggaaacgaggcCGTCGAGAGGGACGCGCAGTTGGCAAA
GCTAAGGGTTTTGAAATTGGATGCGAACTGGGGTTCTACAAGGCATGCAG
CCAGACCTGGTTGTTTGTCATTAAAGACAGTATtacaggagagggagaaa
aagggaggagcaaggaatTTGGTGAGATCGCGGCTGCAAAGGCTATGATG
GACACAACGGCTGTGCATAGGGCCATCAGGACATTAGAGGGCATCATAAA
GCTCGTGCAGGACTTTCCTCGACAGAACGTTGCTGATGTTGATATGGCCG
CGCACGTACAACGGCTTCGAGCCAAGTTTCGAGCGGTTACTTCCATGTTG
GGTGTCTCCGTCAAATTTTCTTTGCATAAGTCAGGCCGGATATCGGATGG
GGAAACTgcgggcggggtgggagaaCTGTCCTTTTGAATGACAAATGCtg
aggaagcgaggcatACAAGCAGTTTGGATCTTGATGCAGTAGTACATTTG
GATGAGACCTGGTATCAGGAAGGTTAccaggaagggggcgaggcgggaag
gaaacgaggcCGTCGAGAGGGACGCGCAGTTGGCAAAGCTAAGGGTTTTG
AAATTGGATGCGAACTGGGGTTCTACAAGGCATGCAGCCAGACCTGGTTG
TTTGTCATTAAAGACAGTATtacaggagagggagaaaaagggaggagcaa
ggaatTTGGTGAGATCGCGGCTGCAAAGGCTATGATGGACACAACGGCTG
TGCATAGGGCCATCAGGACATTAGAGGGCATCATAAAGCTCGTGCAGGAC
TTTCCTCGACAGAACGTTGCTGATGTTGATATGGCCGCGCACGTACAACG
GCTTCGAGCCAAGTTTCGAGCGGTTACTTCCATGTTGGGTGTCTCCGTCA
AATTTTCTTTGCATAAGTCAGGCCGGATATCGGATGGGGAAACTgcgggc
ggggtgggagaaCTGTCCTTTTGAATGACAAATGCtgaggaagcgaggca
tACAAGCAGTTTGGATCTTGATGCAGTAGTACATTTGGATGAGACCTGGT
ATCAGGAAGGTTAccaggaagggggcgaggcgggaaggaaacgaggcCGT
CGAGAGGGACGCGCAGTTGGCAAAGCTAAGGGTTTTGAAATTGGATGCGA
ACTGGGGTTCTACAAGGCATGCAGCCAGACCTGGTTGTTTGTCATTAAAG
ACAGTATtacaggagagggagaaaaagggaggagcaaggaatTTGGTGAG
ATCGCGGCTGCAAAGGCTATGATGGACACAACGGCTGTGCATAGGGCCAT
CAGGACATTAGAGGGCATCATAAAGCTCGTGCAGGACTTTCCTCGACAGA
ACGTTGCTGATGTTGATATGGCCGCGCACGTACAACGGCTTCGAGCCAAG
TTTCGAGCGGTTACTTCCATGTTGGGTGTCTCCGTCAAATTTTCTTTGCA
TAAGTCAGGCCGGATATCGGATGGGGAAACTgcgggcggggtgggagaaC
TGTCCTTTTGAATGACAAATGCtgaggaagcgaggcatACAAGCAGTTTG
GATCTTGATGCAGTAGTACATTTGGATGAGACCTGGTATCAGGAAGGTTA
ccaggaagggggcgaggcgggaaggaaacgaggcCGTCGAGAGGGACGCG
CAGTTGGCAAAGCTAAGGGTTTTGAAATTGGATGCGAACTGGGGTTCTAC
AAGGCATGCAGCCAGACCTGGTTGTTTGTCATTAAAGACAGTATtacagg
agagggagaaaaagggaggagcaaggaatTTGGTGAGATCGCGGCTGCAA
AGGCTATGATGGACACAACGGCTGTGCATAGGGCCATCAGGACATTAGAG
GGCATCATAAAGCTCGTGCAGGACTTTCCTCGACAGAACGTTGCTGATGT
TGATATGGCCGCGCACGTACAACGGCTTCGAGCCAAGTTTCGAGCGGTTA
CTTCCATGTTGGGTGTCTCCGTCAAATTTTCTTTGCATAAGTCAGGCCGG
ATATCGGATGGGGAAACTgcgggcggggtgggagaaCTGTCCTTTTGA

Synonyms

Publications