EWM28502.1, cds2184 (CDS) Nannochloropsis gaditana

Overview
NameEWM28502.1
Unique Namecds2184
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1127343..1127488 +
Alignment locationCM002458.1:1127776..1127949 +
Alignment locationCM002458.1:1128088..1128142 +
Alignment locationCM002458.1:1128261..1128422 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28502.1
ProductEssential protein Yae1
Orig transcript idgnl|cribi|Naga_100058g20.4269.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1127343..1127488 +
CM002458.1supercontigCM002458.1:1127776..1127949 +
CM002458.1supercontigCM002458.1:1128088..1128142 +
CM002458.1supercontigCM002458.1:1128261..1128422 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019191Essential_protein_Yae1_N
Homology
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|585110918|gb|EWM28502.1| (Essential protein Yae1 [Nannochloropsis gaditana])

HSP 1 Score: 362.844 bits (930), Expect = 6.966e-127
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRISDGETAGGVGELSF 178
            MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRISDGETAGGVGELSF
Sbjct:    1 MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRISDGETAGGVGELSF 178          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|671689669|emb|CDS03986.1| (hypothetical protein LRAMOSA06941 [Lichtheimia ramosa])

HSP 1 Score: 90.5077 bits (223), Expect = 5.168e-20
Identity = 46/164 (28.05%), Postives = 87/164 (53.05%), Query Frame = 0
Query:    1 MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRI 164
            M+    +      DL+++V+L+E +   G+++G   G++ G  EGR  G  K FE+G E+G+Y+ C+QTW                     E+A A     ++ V + +++L+   K++ +FPR+N  + DM     +++AK + +TS+LGV  KF++    ++
Sbjct:    1 MSTEPHSEPQMKADLESLVYLEEMFQHYGHEDGLRDGKESGELEGRIFGCEKSFELGVEVGYYEGCAQTWR--------------------ELAEAHGDKVSSKVSKHLQSLQ---KMIDEFPRENCPNTDMYGARDKMKAKMKVITSLLGVRQKFNMEDPPKM 141          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|1032653223|gb|OAQ34494.1| (DUF1715-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 83.9593 bits (206), Expect = 1.920e-17
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 0
Query:    1 MTNAEEARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAV-HRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKF 156
            M N E    +  LDLDA+VHL+  + + G ++G  AG + G  EGR +G  KGFE+  E+G+Y  C+Q W                         A A  D   +  ++++ +  ++ L+  FPRQN  D D+ A + ++R KF+ V S L  + ++
Sbjct:    1 MANTE-YEISKELDLDALVHLENMFVEFGREDGIAAGERNGAIEGRVMGCEKGFELSREVGYYAGCAQLW------------------------KALAQQDPERISEKSLKKINSLLDLINSFPRQNQLDDDVIALLDKIRGKFKTVASALQTAERY 132          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|242093960|ref|XP_002437470.1| (oral cancer-overexpressed protein 1 homolog [Sorghum bicolor] >gi|1205987173|ref|XP_021305196.1| oral cancer-overexpressed protein 1 homolog [Sorghum bicolor] >gi|1205987175|ref|XP_021305197.1| oral cancer-overexpressed protein 1 homolog [Sorghum bicolor] >gi|241915693|gb|EER88837.1| hypothetical protein SORBI_3010G235200 [Sorghum bicolor])

HSP 1 Score: 83.5741 bits (205), Expect = 2.667e-17
Identity = 48/155 (30.97%), Postives = 74/155 (47.74%), Query Frame = 0
Query:   15 LDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIR-TLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRISDGE 168
            LD  + LDET YQEGY+ G   G   G+ EGR VG   GF++G ELGF++ C   W   I                        ++D  A    +R  +E +  LV  +P  +  +  +   ++++R KFRA+T+ LGV +++  H +    D E
Sbjct:   12 LDPTLLLDETHYQEGYKNGYNDGLASGKEEGRQVGLKMGFQVGEELGFFQGCLDVWTSAI------------------------LIDQNAFSARLRKNIEQLAALVSSYPLSDPENEQIQDVMEKIRLKFRAITASLGVKLEYEGHPTSSKQDVE 142          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|1043296135|gb|OBZ81789.1| (Oral cancer-overexpressed protein 1 [Choanephora cucurbitarum])

HSP 1 Score: 83.1889 bits (204), Expect = 3.174e-17
Identity = 42/151 (27.81%), Postives = 79/151 (52.32%), Query Frame = 0
Query:   15 LDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKSGRIS 165
            ++++ +L+  + + G+ +G   G K G  EGR  G  K F++G E+GFY  C   W                     E+A    ++++    RA++ +EG+ KLV +FP  N  D D+ A   +++ K R ++S+LGV +KF + ++ +++
Sbjct:   12 IESLCYLETMFAEHGFDDGYRDGEKSGELEGRIFGCEKAFDLGKEIGFYAGCVDQW--------------------TELAQQSDLVNS----RALKQIEGLKKLVDEFPSYNDHDADLFAMRDKMKNKLRVISSLLGVQLKFDMTETPKMT 138          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|909127027|gb|KNE54338.1| (hypothetical protein AMAG_00318 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 84.7297 bits (208), Expect = 3.547e-17
Identity = 47/144 (32.64%), Postives = 80/144 (55.56%), Query Frame = 0
Query:   13 LDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFG--EIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSV 154
             +L  +VHL+E + +EG +EG   G + GR EG  +G  KG E+  E+ +Y++C++TWL  ++ +     E   S EFG  +  AA+     +   R+  TLE  + L + FPR N  D  +   + R+R +++ V ++LGV +
Sbjct:   32 FELSDLVHLEEMFQEEGREEGIAEGLRAGRPEGFTLGLEKGHEMLTEVAYYQSCAETWLAHVQRTSIASPE---SNEFGDDDDEAARPSRSRSFPPRSRTTLEVFLTLTRSFPRHNALDTGLIELLDRIRGRWKLVCAVLGVPL 172          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|597940029|ref|XP_007324358.1| (hypothetical protein SERLADRAFT_374841 [Serpula lacrymans var. lacrymans S7.9] >gi|336365412|gb|EGN93763.1| hypothetical protein SERLA73DRAFT_63754 [Serpula lacrymans var. lacrymans S7.3] >gi|336377974|gb|EGO19134.1| hypothetical protein SERLADRAFT_374841 [Serpula lacrymans var. lacrymans S7.9])

HSP 1 Score: 83.5741 bits (205), Expect = 4.653e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 0
Query:   13 LDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQN--------VADVDMAAHVQRLRAKFRAVTSMLGV 152
             DL+++VHL++T++  G+ +G E GR  G  EGRA+G+ KGFEI  ELGFY+  + TWL +  +       +GRS+E                 RA+  ++ +++L+  FP  N          +VD++    ++R++++AV + LGV
Sbjct:    5 FDLESLVHLEQTFFDSGHADGFEHGRIHGLIEGRALGREKGFEIWEELGFYEGFANTWLKIYTN-------QGRSEE-----------------RAVHHIKHLLELISQFPSVNPSSQPTPSTPEVDISKLQAQIRSRYKAVCASLGV 128          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|1183498085|gb|ORZ21733.1| (hypothetical protein BCR41DRAFT_385190 [Lobosporangium transversale])

HSP 1 Score: 82.4185 bits (202), Expect = 6.056e-17
Identity = 45/157 (28.66%), Postives = 78/157 (49.68%), Query Frame = 0
Query:    6 EARHTSSLDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAV-HRAIRTLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKFSLHKS 161
            E +    LDLD +VHL+  + + G ++G  AG + G  EGR +G  KGFE   E+G+Y  C++ W                         + A++D   +  + ++ +  ++ L+  FPRQN  D D+ A + R+R +F+ V S +  S +++  KS
Sbjct:    4 EQQLPKELDLDNLVHLENMFVEYGREDGLIAGVRNGVIEGRVMGCEKGFEFSREIGYYAGCAKVW------------------------KSLALLDPERISEKTLKKIGSLLDLINSFPRQNTLDDDIIALLDRIRGRFKTVASAMQTSERYAGPKS 136          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|646310300|gb|KDQ31443.1| (hypothetical protein PLEOSDRAFT_1030488, partial [Pleurotus ostreatus PC15])

HSP 1 Score: 81.2629 bits (199), Expect = 1.331e-16
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 0
Query:   13 LDLDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIRTLEGIIKLVQDFPRQNV------ADVDMAAHVQRLRAKFRAVTSMLGV 152
             DL+++VHL++T+Y +GY++G + GR  G  EGRA+G+ KGFE+  ELGFY+  +  W                     ++  A+ + D+    R +  +  +++L+  FPR N       ADVD+    +++R++++ + S LGV
Sbjct:    2 FDLESLVHLEQTFYDDGYKDGFDHGRIHGLIEGRALGREKGFEMWEELGFYEGFAVLW---------------------KMICARRVGDSN--ERIMNHINQLLQLISQFPRVNPSLTSSSADVDIPKLFRQIRSRYKILCSTLGV 124          
BLAST of EWM28502.1 vs. NCBI_GenBank
Match: gi|1070961615|gb|OEL28791.1| (hypothetical protein BAE44_0010191 [Dichanthelium oligosanthes])

HSP 1 Score: 80.8777 bits (198), Expect = 2.665e-16
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 0
Query:   15 LDAVVHLDETWYQEGYQEGGEAGRKRGRREGRAVGKAKGFEIGCELGFYKACSQTWLFVIKDSITGEGEKGRSKEFGEIAAAKAMMDTTAVHRAIR-TLEGIIKLVQDFPRQNVADVDMAAHVQRLRAKFRAVTSMLGVSVKF 156
            L+  V LDET YQEGY+ G + G   G+ EGR VG   GF++G ELGFY+ C   W+   +                        +D  A    +R  +E +  LV ++P  +  +  +   ++++R KFRA+T+ LGV +++
Sbjct:   12 LEPSVLLDETHYQEGYKNGYDDGLSSGKEEGRQVGLKMGFQVGEELGFYQGCLYVWMSATR------------------------IDQNAFSARVRKNIEQLAALVSNYPLSDPENEQVQDVMEKIRLKFRAITASLGVRLEY 130          
The following BLAST results are available for this feature:
BLAST of EWM28502.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110918|gb|EWM28502.1|6.966e-127100.00Essential protein Yae1 [Nannochloropsis gaditana][more]
gi|671689669|emb|CDS03986.1|5.168e-2028.05hypothetical protein LRAMOSA06941 [Lichtheimia ram... [more]
gi|1032653223|gb|OAQ34494.1|1.920e-1730.57DUF1715-domain-containing protein [Mortierella elo... [more]
gi|242093960|ref|XP_002437470.1|2.667e-1730.97oral cancer-overexpressed protein 1 homolog [Sorgh... [more]
gi|1043296135|gb|OBZ81789.1|3.174e-1727.81Oral cancer-overexpressed protein 1 [Choanephora c... [more]
gi|909127027|gb|KNE54338.1|3.547e-1732.64hypothetical protein AMAG_00318 [Allomyces macrogy... [more]
gi|597940029|ref|XP_007324358.1|4.653e-1732.43hypothetical protein SERLADRAFT_374841 [Serpula la... [more]
gi|1183498085|gb|ORZ21733.1|6.056e-1728.66hypothetical protein BCR41DRAFT_385190 [Lobosporan... [more]
gi|646310300|gb|KDQ31443.1|1.331e-1630.82hypothetical protein PLEOSDRAFT_1030488, partial [... [more]
gi|1070961615|gb|OEL28791.1|2.665e-1631.47hypothetical protein BAE44_0010191 [Dichanthelium ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2192rna2192Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications