rna2178, rna2178 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2178
Unique Name	rna2178
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1338
Alignment location	CM002458.1:1076804..1079431 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100058g5.4252.mrna
Orig protein id	gnl\|cribi\|Naga_100058g5.4252
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1076804..1079431 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100058g5	gene2081	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2178	rna2178-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28485.1	cds2170	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1076804..1079431+
coding sequence from alignment at CM002458.1:1076804..1079431+

mRNA sequence

>rna2178 ID=rna2178|Name=rna2178|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp
CCATTTGTAACAGATTACAAGACATGCGGGCTTTGGCAGTTCGGGGATTA
TTACTTTTTGTGAATATCTGTCGAAGTGCCGCTTTTTCTAGCGTATCAAG
CCAGAAAAGAAGTAAAATGTCAGGTGTAGCTGCCGCTGGCGTCAAAATAT
CTCGCGACGGCGACAGGAGTGCTTTCTCGTATATTGATGTCATTTTATGT
CGACACGGGGAAACTTGCCATAATGCTGAAGGGCGTTGTCAGGGAATGGA
GGATGTGTCACGCCTGACATCGAAAGGCGAGTCTCAAGCTCTTGAACTGG
GAAGGGCATTGGCTGCACGTAAACAGCGCTTCGACAGAATTTTTATCTCA
CCATTGGCACGTGCTCGACATACCTTCGATCTAATGGAAAAGGAGTGGCG
CAGGTTGGGTTGGACGGATTACCCCAAGTGCGCTCCCACATTCGTGCCCG
AGATCCAGGAAATTTGTCTATACGATTGGCAAGGGCACCTACGTCAGGAC
CTTCAGGCACAATTCCCAGAAGAATTTCACAACTGGATGAATGAACCTGC
GATTTTTCGTGTGGGAGACCACTTTCCCGTCCGCGAATTATGGATGCGAG
CGCGACGGAGTTGGGAGCAAATCTTGACGCAGTCGCAACCAGGAGAGAGG
GTTTTAATCGTTGCCCATAGCGGTATCAATCAGGCTATGTGTTTCACTGC
TCTAGGATACGGGGAGACAATGTATCGGCGCTTGAACTTCCCCAACTGTG
GGGCATTGCGGCTGCGGTTGGCTTTGCCCACGTCTCTTGCTGAAGCAACA
GCGCTTGTACAAGTCGGGGGGTATACCCTCCCTGTGACTGACAGCGAAAC
AATGTTCGCTGCGAATGAATGTGGCGAGGAGGATAGACCAATGCGGCACT
ATCGTCCGGTGCATCCAAACGACTGGGAACCGGAAGAGCACCTACCTACA
CGTATGGGCTTGAACCCAAGAGAAACCTCCGCACCAGCGGTGGGCCCCAC
GATATAGTACGAGACAGCGGAAGCAATGCGTATCAATTCACCGACATCCA
CCAAAATTTCTTCTGTAAATAAGGAGCTGAGTGTGTACTATTGATATTTC
TCCGTGTGCTTGCTGAATCTTTTGCTTTTTGTTGAGTGTTGGCAAGCTTC
TTTCGTCACTGTTCTACATTTATCGGCTGCATGGTACGAAGTTATATATA
CCAAACGAGCACAAGGACCATCTCTTATACAAAGGTGACAAACGTACAAG
GCAAACCTGAATAGGTGTCCTGCGCGGCCTGCGTGCCGTGTCTAGTCGAG
AATACAGGCATAAAGAGTAATGCAATGTAACCAAGAGC

protein sequence of rna2178

>rna2178-protein ID=rna2178-protein|Name=rna2178|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MIDSSTSVRPSDPRAVAAGVMSGTFQPHQHNTLEDELLGQHIFADLIAAM
GASAMVAPFVSVIDKAIIQNQAGAASLESSIVSSFQSLVRDPLTFLRRPE
VLMVWTVYGVTYFAANLVNTTSKAYDYQADVPRLLATTTANMGAGIAKDR
AYARMFGTVAPRGLPASSYLFFFSRDLVTMGASFNVPEPLAHEMHTKLGV
PAGAADVAAQLFCPVAMQFLTTPMHLLGLDLYNRPLSSWRQRYHLIASNY
QKTVAARIARILPAFGFGGLGNKKIRQEERAWIKRRQNALHKGKKEPVVV
LGRDRHGGEEGLVRQGPDRPTLMPGLLPRPVVPSMLPLPAWAVNTK

mRNA from alignment at CM002458.1:1076804..1079431+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2178 ID=rna2178|Name=rna2178|organism=Nannochloropsis gaditana|type=mRNA|length=2628bp|location=Sequence derived from alignment at CM002458.1:1076804..1079431+ (Nannochloropsis gaditana)
CACCTGGACACCAACGTGCACACACTTCTGACTAAAATTTTACTAAATTT
TCATTGTAGTGCACAGGCCTTAATATTTCGTTTCAAAGGTGGACGTCTTA
AGTCGTTTTTTACTGGACAAGAGGCCGCCGACTCCCCGGCAGCCTCTGGG
GGGATTCCGGCAGGAGATCGACCTGGCTTCTCTTTCGATTTGAAGTAACA
GCTCGTTGTTTCCCCATTATTGGTAAGGTGCCCAAAATCTGTAATTCCTG
GCTCATAGAGGGATGGATGATGCTTGCAAGGGCTTAGGTCACGCCGTAAT
GCCTAGGCAAGGACCGGAAATCCCCCGAGCGCCGACAAGATCGCCATTCC
TAAAATTTTCACGTTCCTATTAACCCTCACCGTTCCCGTATTTGAACGTC
CCATTCCCATATCTCCCGTTCAAAAATAGGAGGATGATAGACTCGTCAAC
GTCTGTGAGGCCAAGTGATCCTCGGGCCGTAGCGGCTGGTGTTATGTCTG
GGACTTTCCAGCCTCACCAACATAATACCTTGGAGGACGAGCTTCTTGGC
CAACACATATTCGCGGACCTGATAGCAGCCATGGGCGCGTCGGCTATGGT
GGCGCCTTTCGTCAGGTACGCTTATATACCCAGTAATATTAACAAGAGCG
GACAGATCTCTCGGCTGTAGTGCAAAGGGTCGAAATTGCCTCGAACATGC
TGGAACCTCTCGACCGACTTCCTTTTCACAAGCTTACTTTTTTCGCCAAC
GTCCCGTTTTTGTCTTGTCTTCCACATCCAGTGTCATAGATAAAGCCATC
ATACAAAATCAAGCCGGGGCCGCGTCACTGGAgtcctccatcgtctcctc
GTTTCAATCTCTCGTCCGCGACCCTCTGACCTTCCTCCGGAGGCCAGAGG
TCCTCATGGTCTGGACCGTGTACGGCGTCACTTACTTCGCTGCCAACCTC
GTCAACACCACCAGCAAAGCCTACGACTACCAGGCGGACGTGCCCCGCCT
CTTGGCTACCACCACGGCCAACATGGGCGCCGGTATCGCCAAGGACAGGG
CCTACGCACGCATGTTCGGCACCGTGGCCCCCCGAGGCCTGCCAGCGTCG
TCCTACTTGTTTTTTTTCTCGCGGGACTTGGTGACCATGGGAGCTTCATT
CAATGTGCCTGAGCCCTTGGCGCATGAGATGCACACAAAGCTGGGCGTGC
CTGCAGGAgcggcggacgtggcggcCCAGGTAAGGGAGAGAGtctatata
tatacatatatatagATACACGCCTTAGGCTTGATTAGAACTGTTCCAGA
CACGAGACGGTTGTATGCGTATATTTTCGATTGCCAACCTACTTTTTCCT
ACCTTCggttcatcttcctctcgcaGCTCTTCTGTCCCGTGGCCATGCAG
TTCCTCACCACCCCCATGCACTTGTTGGGTCTGGACCTGTACAaccggcc
cctctcctcctggcgGCAACGCTACCATTTGATTGCCTCCAACTACCAGA
AAACGGTGGCAGCGAGAATAGCGAGGatccttcctgcctttggGTTCGGG
GGTTTGGGGAACAAAAAAATCAGGCAGGAGGAGCGTGCCTGGATAAAGCG
GCGACAAAACGCTCTGcacaaagggaagaaagaaccggtggtggtgttgg
ggCGCGACcggcatggaggagaggaaggcttgGTACGTCAAGGGCCAGAT
AGGCCCACGCTCATGCCGGGGCTGCTCCCACGTCCCGTGGTACCCTCAAT
GTTGCCACTCCCGGCTTGGGCAGTGAATACTAAGTAGAGGAACaggcagg
tggaggggggactTACTACCTGCACACTCGGATACCGTGAAAATGAAGAG
CCACGCCGGGCTTTTATAAACGTTCCATGATGGTGGAGCCGGCGACTCTT
TGTAAAGTACGTTTGTATGTACAGAGCTTAGCGTTCGGGGGAGAACGCGC
GAAATACGAAGACATGATAGTTCAAAGGTCGCTTTCCAGGGCCCCAttag
gaaaaaaagggagaaaggctggTAAGAGACACTTGTTTCAGGACAGTGCC
TATGTGCATAAGCGGTGTTGGTACAGATAGGCGCATACAGTGGCGGTGCC
GTGAGGACAGGGTTTGTAGGTGCCCAATTGAAATGCGCTTATAAAGAAGG
GATGAAAGACGCAGTAAAGCTTTTCTAAGCACCAGGTTCTCAAAgcttgg
aaaagaggggaccATTTCCTGTCGTCCTCCGTGTCGTCATGTGATGCGAC
CAGACGTTCAGTTGGTTCCTCTCCTGCAAGTCAGACTCAATTTTGAAGAA
GTCTCGGTATGCAGCTCACGTGTAAATAGCGGGAGGataagggggaggga
atgtcATATGCCTCAGACAAGCAAGTGACATCGTAGAATGAAACGACTTG
ACCTGATTGAGCTCGAATCATGACCCTACGAGAGCCTCAGCTATTCTGCT
CGACACATCTCCTACTCTAGGAGACACTATATTTCATAAAATTTGATTGT
GTACGCCGATTCCATCTATCGCTCACTTCCCAACCGCGTAGTTGAGCACA
AAAGAAAGCGCAAATCGGGGTCCAGACGGACATTGAAATCCAGAGCAAGC
AACGGCGTGCATCAATTAGTACATTCCT

Coding sequence (CDS) from alignment at CM002458.1:1076804..1079431+

>rna2178 ID=rna2178|Name=rna2178|organism=Nannochloropsis gaditana|type=CDS|length=3123bp|location=Sequence derived from alignment at CM002458.1:1076804..1079431+ (Nannochloropsis gaditana)
ATGATAGACTCGTCAACGTCTGTGAGGCCAAGTGATCCTCGGGCCGTAGC
GGCTGGTGTTATGTCTGGGACTTTCCAGCCTCACCAACATAATACCTTGG
AGGACGAGCTTCTTGGCCAACACATATTCGCGGACCTGATAGCAGCCATG
GGCGCGTCGGCTATGGTGGCGCCTTTCGTCAGTGTCATAGATAAAGCCAT
CATACAAAATCAAGCCGGGGCCGCGTCACTGGAgtcctccatcgtctcct
cGTTTCAATCTCTCGTCCGCGACCCTCTGACCTTCCTCCGGAGGCCAGAG
GTCCTCATGGTCTGGACCGTGTACGGCGTCACTTACTTCGCTGCCAACCT
CGTCAACACCACCAGCAAAGCCTACGACTACCAGGCGGACGTGCCCCGCC
TCTTGGCTACCACCACGGCCAACATGGGCGCCGGTATCGCCAAGGACAGG
GCCTACGCACGCATGTTCGGCACCGTGGCCCCCCGAGGCCTGCCAGCGTC
GTCCTACTTGTTTTTTTTCTCGCGGGACTTGGTGACCATGGGAGCTTCAT
TCAATGTGCCTGAGCCCTTGGCGCATGAGATGCACACAAAGCTGGGCGTG
CCTGCAGGAgcggcggacgtggcggcCCAGCTCTTCTGTCCCGTGGCCAT
GCAGTTCCTCACCACCCCCATGCACTTGTTGGGTCTGGACCTGTACAacc
ggcccctctcctcctggcgGCAACGCTACCATTTGATTGCCTCCAACTAC
CAGAAAACGGTGGCAGCGAGAATAGCGAGGatccttcctgcctttggGTT
CGGGGGTTTGGGGAACAAAAAAATCAGGCAGGAGGAGCGTGCCTGGATAA
AGCGGCGACAAAACGCTCTGcacaaagggaagaaagaaccggtggtggtg
ttggggCGCGACcggcatggaggagaggaaggcttgGTACGTCAAGGGCC
AGATAGGCCCACGCTCATGCCGGGGCTGCTCCCACGTCCCGTGGTACCCT
CAATGTTGCCACTCCCGGCTTGGGCAGTGAATACTAAGTAGATGATAGAC
TCGTCAACGTCTGTGAGGCCAAGTGATCCTCGGGCCGTAGCGGCTGGTGT
TATGTCTGGGACTTTCCAGCCTCACCAACATAATACCTTGGAGGACGAGC
TTCTTGGCCAACACATATTCGCGGACCTGATAGCAGCCATGGGCGCGTCG
GCTATGGTGGCGCCTTTCGTCAGTGTCATAGATAAAGCCATCATACAAAA
TCAAGCCGGGGCCGCGTCACTGGAgtcctccatcgtctcctcGTTTCAAT
CTCTCGTCCGCGACCCTCTGACCTTCCTCCGGAGGCCAGAGGTCCTCATG
GTCTGGACCGTGTACGGCGTCACTTACTTCGCTGCCAACCTCGTCAACAC
CACCAGCAAAGCCTACGACTACCAGGCGGACGTGCCCCGCCTCTTGGCTA
CCACCACGGCCAACATGGGCGCCGGTATCGCCAAGGACAGGGCCTACGCA
CGCATGTTCGGCACCGTGGCCCCCCGAGGCCTGCCAGCGTCGTCCTACTT
GTTTTTTTTCTCGCGGGACTTGGTGACCATGGGAGCTTCATTCAATGTGC
CTGAGCCCTTGGCGCATGAGATGCACACAAAGCTGGGCGTGCCTGCAGGA
gcggcggacgtggcggcCCAGCTCTTCTGTCCCGTGGCCATGCAGTTCCT
CACCACCCCCATGCACTTGTTGGGTCTGGACCTGTACAaccggcccctct
cctcctggcgGCAACGCTACCATTTGATTGCCTCCAACTACCAGAAAACG
GTGGCAGCGAGAATAGCGAGGatccttcctgcctttggGTTCGGGGGTTT
GGGGAACAAAAAAATCAGGCAGGAGGAGCGTGCCTGGATAAAGCGGCGAC
AAAACGCTCTGcacaaagggaagaaagaaccggtggtggtgttggggCGC
GACcggcatggaggagaggaaggcttgGTACGTCAAGGGCCAGATAGGCC
CACGCTCATGCCGGGGCTGCTCCCACGTCCCGTGGTACCCTCAATGTTGC
CACTCCCGGCTTGGGCAGTGAATACTAAGTAGATGATAGACTCGTCAACG
TCTGTGAGGCCAAGTGATCCTCGGGCCGTAGCGGCTGGTGTTATGTCTGG
GACTTTCCAGCCTCACCAACATAATACCTTGGAGGACGAGCTTCTTGGCC
AACACATATTCGCGGACCTGATAGCAGCCATGGGCGCGTCGGCTATGGTG
GCGCCTTTCGTCAGTGTCATAGATAAAGCCATCATACAAAATCAAGCCGG
GGCCGCGTCACTGGAgtcctccatcgtctcctcGTTTCAATCTCTCGTCC
GCGACCCTCTGACCTTCCTCCGGAGGCCAGAGGTCCTCATGGTCTGGACC
GTGTACGGCGTCACTTACTTCGCTGCCAACCTCGTCAACACCACCAGCAA
AGCCTACGACTACCAGGCGGACGTGCCCCGCCTCTTGGCTACCACCACGG
CCAACATGGGCGCCGGTATCGCCAAGGACAGGGCCTACGCACGCATGTTC
GGCACCGTGGCCCCCCGAGGCCTGCCAGCGTCGTCCTACTTGTTTTTTTT
CTCGCGGGACTTGGTGACCATGGGAGCTTCATTCAATGTGCCTGAGCCCT
TGGCGCATGAGATGCACACAAAGCTGGGCGTGCCTGCAGGAgcggcggac
gtggcggcCCAGCTCTTCTGTCCCGTGGCCATGCAGTTCCTCACCACCCC
CATGCACTTGTTGGGTCTGGACCTGTACAaccggcccctctcctcctggc
gGCAACGCTACCATTTGATTGCCTCCAACTACCAGAAAACGGTGGCAGCG
AGAATAGCGAGGatccttcctgcctttggGTTCGGGGGTTTGGGGAACAA
AAAAATCAGGCAGGAGGAGCGTGCCTGGATAAAGCGGCGACAAAACGCTC
TGcacaaagggaagaaagaaccggtggtggtgttggggCGCGACcggcat
ggaggagaggaaggcttgGTACGTCAAGGGCCAGATAGGCCCACGCTCAT
GCCGGGGCTGCTCCCACGTCCCGTGGTACCCTCAATGTTGCCACTCCCGG
CTTGGGCAGTGAATACTAAGTAG

Synonyms

Publications