rna2174, rna2174 (mRNA) Nannochloropsis gaditana

Overview
Namerna2174
Unique Namerna2174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length890
Alignment locationCM002458.1:1067889..1068557 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100058g1.4263.mrna
Orig protein idgnl|cribi|Naga_100058g1.4263
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1067889..1068557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100058g1gene2077Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2174rna2174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28496.1cds2166Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2174 ID=rna2174|Name=rna2174|organism=Nannochloropsis gaditana|type=mRNA|length=890bp
TGGCGAAGCCACGCTGACGATCAAAGCTGGACACACTCGCCCCTTGGTTG
ACAAAAACACTTCGATTTTGACCTTTTCGAGCTCAAAAGTACCTTATTTA
CTCGGAGGTCTAACGTCTGATACACTTTTCACAGTGAATGGGGGCATCTG
GTCGTTTTGAATGAGTTGCAAGCCTGCATCTCTTCGGAAAGGAACTAAGT
TGGCTCGCAACGAACTGATTTGCTGTGAGGAGATCCCAGAGGACAGGCTA
ATATAAGCAAACAAGCCCAAACACACGCATCCAAGGGCCTCACATTTCTC
TGCCATGACGGCCACCCTGGTCTACCAGGTCCCTGGAGGGGATTTCGGGG
CGTATCTTCTTGGACCTTGGAAGCGCACGCTCGAGTGTCGAGAATTCGGA
AAAAGCTACGAGCATCAACGCACATCCAACTCAGTGGTGGTGATTGAGCA
CGCCGTGGGAGTGGCTGCTGAACCACCGACTTATTTTCTCAATTGGAAAT
TTGGCCGATCTTTGGAGGAGGAAGATTTGAAATTAGGCTTCTGCATGCAT
TTTATGCAGGATCCGGACATTACAAATCTAGAATGGCGGTTCGAAGAGCA
CAAATGCCATGGCTGGTTTTTGCCAAGTATCTCCGTGGCAACTCTCAATT
TCCGGTCTTATGATCGCTCGACTACCGTCACATATCGAGTCGTCGACGAG
GACACGATGGCAGTCTCTATTGTAGAAGTGGAAAGCCAGCGTTCATCCGT
GCAATACGGTCACATGCTCCGCCTACCGGTTGTGGACACTAGCAAAAATG
GCTTCGAAGCGTGAACGGCTCGATCGCAAAAATCTCTGCTCGCATGCGTC
TTGGTGCTGAGGATTCGACCCTCTTCAAAAATTTCATACA
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protein sequence of rna2174

>rna2174-protein ID=rna2174-protein|Name=rna2174|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MTKVALVDLHTKPWGWRGRSLRLLLLRHRSLSPSLHSPLRSHESARVPNS
SAQTEIVYPVCPLETGTYWQIRVGGIGRSTVASVPAMVRMRSVAVVAVVL
LLSAVTMSLSPSLKIALRWRARERLRVFMRLQDTRAMSEKNINTKQGKDN
MKREKNIFGCIAKHNVNTFTINGNFGCSTVLDGGCQH
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mRNA from alignment at CM002458.1:1067889..1068557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2174 ID=rna2174|Name=rna2174|organism=Nannochloropsis gaditana|type=mRNA|length=669bp|location=Sequence derived from alignment at CM002458.1:1067889..1068557+ (Nannochloropsis gaditana)
ATGACAAAGGTAGCGTTAGTCGATTTGCACACGAAGCCgtggggctggcg
gggacgCTCCCTCAGACTGCTCCTATTACgccatcgctccctctctccct
ccctccactcacCGTTACGGAGCCACGAGTCTGCGCGCGTCCCGAACTCA
TCAGCACAAACAGAGATTGTGTACCCTGTTTGCCCGCTCGAGACAGGCAC
GTATTGGCAAATACGTGTCGGCGGTATAGGCAGATCCACCGTCGCATCCG
TTCCCGCCATGGTCCGGATGCGCAGCGTCGCTGTCGTTGCAGTCGTGCTG
CTGCTTAGTGCAGTCACGATGTCACTTTCGGTATGTGGCATTGCGCCTGT
tgcgtggaagggaagataaTGAGTTACAAATGAATGCCAGCAGCGGCTAT
CGTGATGGCTACTCATAAATTTCAAACGCACACAGCCGTCGCTCAAGATC
GCTTTAAGATGGCGTGCGCGGGAAAGGCTTCGCGTCTTCATGCGCCTTCA
AGATACAAGAGCGATGAGTGAGAAAAACATTAATAccaagcaaggaaaag
acaatatgaaaagggaaaaaaacatCTTCGGCTGCATAGCAAAACACAAT
GTAAACACATTCACGATAAATGGCAACTTCGGCTGTTCAACCGTTCTAGA
CGGAGGATGTCAACactag
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Coding sequence (CDS) from alignment at CM002458.1:1067889..1068557+

>rna2174 ID=rna2174|Name=rna2174|organism=Nannochloropsis gaditana|type=CDS|length=1128bp|location=Sequence derived from alignment at CM002458.1:1067889..1068557+ (Nannochloropsis gaditana)
ATGACAAAGGTAGCGTTAGTCGATTTGCACACGAAGCCgtggggctggcg
gggacgCTCCCTCAGACTGCTCCTATTACgccatcgctccctctctccct
ccctccactcacCGTTACGGAGCCACGAGTCTGCGCGCGTCCCGAACTCA
TCAGCACAAACAGAGATTGTGTACCCTGTTTGCCCGCTCGAGACAGGCAC
GTATTGGCAAATACGTGTCGGCGGTATAGGCAGATCCACCGTCGCATCCG
TTCCCGCCATGGTCCGGATGCGCAGCGTCGCTGTCGTTGCAGTCGTGCTG
CTGCTTAGTGCAGTCACGATGTCACTTTCGCCGTCGCTCAAGATCGCTTT
AAGATGGCGTGCGCGGGAAAGGCTTCGCGTCTTCATGCGCCTTCAAGATA
CAAGAGCGATGAGTGAGAAAAACATTAATAccaagcaaggaaaagacaat
atgaaaagggaaaaaaacatCTTCGGCTGCATAGCAAAACACAATGTAAA
CACATTCACGATAAATGGCAACTTCGGCTGTTCAACCGTTCTAGACGGAG
GATGTCAACactagATGACAAAGGTAGCGTTAGTCGATTTGCACACGAAG
CCgtggggctggcggggacgCTCCCTCAGACTGCTCCTATTACgccatcg
ctccctctctccctccctccactcacCGTTACGGAGCCACGAGTCTGCGC
GCGTCCCGAACTCATCAGCACAAACAGAGATTGTGTACCCTGTTTGCCCG
CTCGAGACAGGCACGTATTGGCAAATACGTGTCGGCGGTATAGGCAGATC
CACCGTCGCATCCGTTCCCGCCATGGTCCGGATGCGCAGCGTCGCTGTCG
TTGCAGTCGTGCTGCTGCTTAGTGCAGTCACGATGTCACTTTCGCCGTCG
CTCAAGATCGCTTTAAGATGGCGTGCGCGGGAAAGGCTTCGCGTCTTCAT
GCGCCTTCAAGATACAAGAGCGATGAGTGAGAAAAACATTAATAccaagc
aaggaaaagacaatatgaaaagggaaaaaaacatCTTCGGCTGCATAGCA
AAACACAATGTAAACACATTCACGATAAATGGCAACTTCGGCTGTTCAAC
CGTTCTAGACGGAGGATGTCAACactag
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Synonyms
Publications