EWM28496.1, cds2166 (CDS) Nannochloropsis gaditana

Overview
NameEWM28496.1
Unique Namecds2166
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1067889..1068218 +
Alignment locationCM002458.1:1068324..1068557 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28496.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100058g1.4263.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1067889..1068218 +
CM002458.1supercontigCM002458.1:1068324..1068557 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28496.1 vs. NCBI_GenBank
Match: gi|585110912|gb|EWM28496.1| (hypothetical protein Naga_100058g1 [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 2.231e-135
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 
Query:    1 MTKVALVDLHTKPWGWRGRSLRLLLLRHRSLSPSLHSPLRSHESARVPNSSAQTEIVYPVCPLETGTYWQIRVGGIGRSTVASVPAMVRMRSVAVVAVVLLLSAVTMSLSPSLKIALRWRARERLRVFMRLQDTRAMSEKNINTKQGKDNMKREKNIFGCIAKHNVNTFTINGNFGCSTVLDGGCQH 187
            MTKVALVDLHTKPWGWRGRSLRLLLLRHRSLSPSLHSPLRSHESARVPNSSAQTEIVYPVCPLETGTYWQIRVGGIGRSTVASVPAMVRMRSVAVVAVVLLLSAVTMSLSPSLKIALRWRARERLRVFMRLQDTRAMSEKNINTKQGKDNMKREKNIFGCIAKHNVNTFTINGNFGCSTVLDGGCQH
Sbjct:    1 MTKVALVDLHTKPWGWRGRSLRLLLLRHRSLSPSLHSPLRSHESARVPNSSAQTEIVYPVCPLETGTYWQIRVGGIGRSTVASVPAMVRMRSVAVVAVVLLLSAVTMSLSPSLKIALRWRARERLRVFMRLQDTRAMSEKNINTKQGKDNMKREKNIFGCIAKHNVNTFTINGNFGCSTVLDGGCQH 187
[Close]
BLAST of EWM28496.1 vs. NCBI_GenBank
Match: gi|585108445|gb|EWM26415.1| (hypothetical protein Naga_100854g2 [Nannochloropsis gaditana])

HSP 1 Score: 65.4698 bits (158), Expect = 2.424e-10
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:    9 LHTKPWGWRGRSLRLLLLRHRSLSPSLHSPLRSHESARVPNSSAQTEIVYPVCPLETGTY 68
            L+TKP GWRG S  L  LRHRSL  +L SPLRSH SARV N+S +T I+YP      GTY
Sbjct:   79 LNTKPVGWRGPSPILFKLRHRSLPSTLLSPLRSHMSARVSNTSTRTVILYPTASPGAGTY 138
The following BLAST results are available for this feature:
BLAST of EWM28496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110912|gb|EWM28496.1|2.231e-135100.00hypothetical protein Naga_100058g1 [Nannochloropsi... [more]
gi|585108445|gb|EWM26415.1|2.424e-1060.00hypothetical protein Naga_100854g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2174rna2174Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications