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Properties
| Property Name | Value |
|---|
| Product | rna exonuclease 4 |
| Orig transcript id | gnl|cribi|Naga_100131g4.7454.mrna |
| Orig protein id | gnl|cribi|Naga_100131g4.7454 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1061901..1063001 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2170 ID=rna2170|Name=rna2170|organism=Nannochloropsis gaditana|type=mRNA|length=1621bp
CGTCCATGAGCTAATAAACATTTTTGTGTGGCGCCAAAAGCAGGAACAAT
CAAGGCTGCGGGAGTAAAACAGCTGATAGTCACGACATCGGAAGTATTTT
GGCCTTCAGTCCTCGTCTTTTTGGCTTTCTTTCACCGGTCAGTCTGCTAC
CACCACAAGACGCATACGTTGCCCTGTCCAACCCCGTGGTCCCCACAACA
TGGTGTATCTCGTATTTCGTGTGCCTTGTGTGGCAAGACGGTACCCTTTA
CGCGTCCATCGTCGCACGGTATATGCTTTGAAACGCTGCTGCACTACAAA
CACCCCGACGGCGTTTGAGCAAACCCCACTGGTCCTCCCTAAAAAGGTCA
AGAAGCGGAAAGTCAAAGTTGACCCGATGACCCCTCCTCCTGCCCCGGAC
TCATTCCCCGTCTACGAACGCAAAGATTTCTTTCGATTCGAACTCTTACA
CCGATCCAGTAAGGAGGGATCGCGCGCACGGGTCGGGCGTTTACATACTC
CGCATGGCAATGTGAATACTCCAGGTTTCGTGGCAGTTGCGACCAATGGT
GCCCTAAAAGCCGTCGACCACGACTGGGGAAACCAAGCAGGCCAAGAACT
CACCTTCTGCAACACTTACCATCTGCTCCTACAGCCTGGCCCTGACGTCA
TCAAGGCTTGTGGTGGGCTTCACAAATTCGTCAACCGGAACCGTCCCATC
ATCACAGACAGTGGAGGCTTTCAGGTGTTTTCCCTCGCGCACGGCTCCGT
CTTCGATGAGCTAAATATGAAATCGCGCAGCAATCGACATCGATCAGAGA
CGTCGTCTGTTCTGAAAATAAGCGAAGAAGGCTGTCTTTTCCGATCTTAC
CGGGATGGCCGTAAGGTCCTCCTGACACCGGAATCGTCCGTACAAGCCCA
AAAAGCCTACGGGTCCGACATCATCATCCCCCTGGACGAGTTGCATCCAT
ACCACATCGACTCCGAGGCCCTTCTTCGCTGTGTCCTGCGTTCACATCGG
TGGGAGGCCCGGTCCCTTAAGGAGCATTTGAAAGACGTGCGACAACAAGC
CATGTACGCTGTTATTCACGGGGGCGTCGACCCTACCCTGCGCAAAGCCA
GCTGTGAGTACCTGACTGGACTTCCTTTCGATGGATTTGCAGTCGGAGGA
GCCTTGGGCAAGGACAGGGACGAGCTGATCGAGGTCCTGCGGGTGACTAT
GCCACATTTGCCCGTGGATAAGCCCAACCATTTGCTAGGGATCGCCGACG
AACCATCCATCTGGGCGGGTGCCGCCTTGGGGGTGGATACATTCGATTCC
TGTTTTCCCACGCGTATTGCACGTCATGGGACGCTCTTGACCCAGCAAGG
GCCTGTGTACATTCGGAAACAGGTGCACAAGGAGGATTTGCGGCCGCTGG
AGGAGGGTTGTGAGTGCTTCACCTGCAAGAGACACAGTCGTGCATATTTG
CATCACCTTTACCGGGCATTTGAGCCCTTGAGCGCAACATTGCTTAGCAT
ACACAACATCGCATACATGAATGGGCTTATGGCGCGCATTCGAGCCAAGA
TTCTGCGCAATGAACTTTAACAAAGCTGCCTACAGCCACAAAATTCTGGA
AATTAGAGTGCTTCCCTCCAA back to topprotein sequence of rna2170 >rna2170-protein ID=rna2170-protein|Name=rna2170|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIA
RSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKS
LYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRT
WVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPV
AMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADD
ARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP back to topmRNA from alignment at CM002458.1:1061901..1063001- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna2170 ID=rna2170|Name=rna2170|organism=Nannochloropsis gaditana|type=mRNA|length=1101bp|location=Sequence derived from alignment at CM002458.1:1061901..1063001- (Nannochloropsis gaditana)
AGTTACTTTGGCTTATCAACATTTTTATTACGTCATGATGTGCACGACAT
AGCAGGCGAAGGATCAAGTCAGGTTTTCCATCGCAGAGCGGCGACACATC
AGTATCCTTCGACGCTTGTGAGCTTCCCAGCGACCGTCGGGCTACATACA
TAAAGTTGATCAATTGTGGCATTTCATAAGATAATGTCGAACTGGGAGCG
CCTTCAGATTAAAATCTTAAAGGCTGAAGAAGAACGGGTCAAGAAAAAGG
CTGCAGCGTCGAATATCGGAGCTGGTACCTCCCAGAAGCCATCAATGTCT
GATTTATCCCAAGGGAAGCCGACACAGATTGCACGCTCTGCTCCAAAACA
CAAAAGAAAGCGGCGAGAGATATCAGAGGCTGTACGAGAGGCTGAAAGAG
CGCGAGAAGCAGGGAAAGAAAAAGAGGATCGGCTTCGATCTCTAACGCTA
AGCGCGGACGATATGACAGTGATGGAGAAATCTTTGTACGTAGGTTTGGA
CTGTGAAATGGTTGGAGTGGGCGATGGAGGCAAGAGAAGTGCTCTGGCAC
GTGTTACACTGGTGGATTTCGATGGCCGTGTCATCTATGACGAGCATGTC
AGACCTAGGGAGCGTATCACAGACTTTCGTACTTGGGTGAGCGGGGTAAA
AGCCAAGCACTTGAAAGCGGCGCTGTCCCTTAAGGAATGCATCCTGCAAG
TCGCTGATTTAGTAAAGGGGAAGATTATCGTGGGACACGCCCTCAAAAAC
GATTTACAAGTCTTGATGCTTCAGCATCCCGTAGCGATGATTCGAGACAC
GGCCAGATACCGTGCCTATATGCGATCGCACGGAAAGGAGGGTGGGAAGC
TCCGTCCAAGACGTTTGAAAGATCTGGCGCTTGATTTTTTGGGTATGGAA
ATTCAAGAAGGGAAGCACGACTCTGCGGATGATGCCCGTGCAGCCATGTT
ACTTTATCGCGCTCAACGAACAGAGTGGGAGAAAGAGCTAAGGAAGACGC
ACTTGCATAGGTACACGAAAGCCAATGGAAAGAAAAAGCGCAATCTTAGA
GATGGGATGCAGGCACCTTAGATAAAAAGAACAAGCATTTCGAACACAAA
T back to topCoding sequence (CDS) from alignment at CM002458.1:1061901..1063001- >rna2170 ID=rna2170|Name=rna2170|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002458.1:1061901..1063001- (Nannochloropsis gaditana)
ATGTCGAACTGGGAGCGCCTTCAGATTAAAATCTTAAAGGCTGAAGAAGA
ACGGGTCAAGAAAAAGGCTGCAGCGTCGAATATCGGAGCTGGTACCTCCC
AGAAGCCATCAATGTCTGATTTATCCCAAGGGAAGCCGACACAGATTGCA
CGCTCTGCTCCAAAACACAAAAGAAAGCGGCGAGAGATATCAGAGGCTGT
ACGAGAGGCTGAAAGAGCGCGAGAAGCAGGGAAAGAAAAAGAGGATCGGC
TTCGATCTCTAACGCTAAGCGCGGACGATATGACAGTGATGGAGAAATCT
TTGTACGTAGGTTTGGACTGTGAAATGGTTGGAGTGGGCGATGGAGGCAA
GAGAAGTGCTCTGGCACGTGTTACACTGGTGGATTTCGATGGCCGTGTCA
TCTATGACGAGCATGTCAGACCTAGGGAGCGTATCACAGACTTTCGTACT
TGGGTGAGCGGGGTAAAAGCCAAGCACTTGAAAGCGGCGCTGTCCCTTAA
GGAATGCATCCTGCAAGTCGCTGATTTAGTAAAGGGGAAGATTATCGTGG
GACACGCCCTCAAAAACGATTTACAAGTCTTGATGCTTCAGCATCCCGTA
GCGATGATTCGAGACACGGCCAGATACCGTGCCTATATGCGATCGCACGG
AAAGGAGGGTGGGAAGCTCCGTCCAAGACGTTTGAAAGATCTGGCGCTTG
ATTTTTTGGGTATGGAAATTCAAGAAGGGAAGCACGACTCTGCGGATGAT
GCCCGTGCAGCCATGTTACTTTATCGCGCTCAACGAACAGAGTGGGAGAA
AGAGCTAAGGAAGACGCACTTGCATAGGTACACGAAAGCCAATGGAAAGA
AAAAGCGCAATCTTAGAGATGGGATGCAGGCACCTTAG back to top
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