EWM28509.1, cds2162 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|585110926|gb|EWM28509.1| (rna exonuclease 4 [Nannochloropsis gaditana]) HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0 Query: 1 MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295 MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP Sbjct: 1 MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|553191718|ref|XP_005855440.1| (rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293621|gb|EKU20921.1| rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 363.614 bits (932), Expect = 2.844e-125 Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0 Query: 119 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDG+QAP Sbjct: 1 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGVQAP 177
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|299469651|emb|CBN76505.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 229.565 bits (584), Expect = 1.175e-68 Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 0 Query: 94 MTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKEL 269 +T EK+ YV LDCEMVGVG GG RSALAR LVD+DG IYD+HV P ER+TDFRT+VSGVKA HLK + L++C +VA ++K K++VGHAL NDL+ LM+ HP RDTA YR Y ++HGK GGKLRPR LK L+ + L IQ G+H+ A+DA+AAM LY+ R EWEK L Sbjct: 265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKLARFEWEKSL 440
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|1173941123|gb|OQR90362.1| (RNA exonuclease 4 [Thraustotheca clavata]) HSP 1 Score: 206.068 bits (523), Expect = 1.641e-61 Identity = 93/174 (53.45%), Postives = 126/174 (72.41%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270 ++ S V +DCEMVGVG G RS LAR ++VDFDG V+YD+HV+P ER+TDFRT VSG+++KHL+ A+ +C +VA++ + KI+VGHAL+ND+Q LML HP MIRDT +YR YMR G KL P+ LK+LAL+ L IQ G+HDS +DAR ++ LY+ WEK ++ Sbjct: 60 IDTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEHDSVEDARTSLELYKHAMAPWEKAIK 232
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|635362491|emb|CCI48774.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 203.756 bits (517), Expect = 8.143e-61 Identity = 95/175 (54.29%), Postives = 128/175 (73.14%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRK 271 ++KS + +DCEMVGVG G++ ALAR +++DFDG V++D V P E++TD+RT VSG++ + K A+S +C+ +V L+K KI+VGHALKND Q LML HP RDTARYR YMR + K G KL PR LK LA +FL IQEG+HDS +DARAA+ LY+ Q+ +WEK L++ Sbjct: 43 IKKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQALMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYLQE 216
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|635362490|emb|CCI48773.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 204.912 bits (520), Expect = 8.907e-61 Identity = 95/174 (54.60%), Postives = 127/174 (72.99%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270 ++KS + +DCEMVGVG G++ ALAR +++DFDG V++D V P E++TD+RT VSG++ + K A+S +C+ +V L+K KI+VGHALKND Q LML HP RDTARYR YMR + K G KL PR LK LA +FL IQEG+HDS +DARAA+ LY+ Q+ +WEK L+ Sbjct: 88 IKKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQALMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYLQ 260
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|813219258|ref|XP_012211006.1| (hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65] >gi|641523425|gb|KDO18280.1| hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 203.756 bits (517), Expect = 1.010e-60 Identity = 97/176 (55.11%), Postives = 124/176 (70.45%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKT 272 ++ SL V +DCEMVGVG GKRS LAR ++VDFDG V+YDEHV+P ER+TDFRT VSG++AK L+ AL ++C VA + GKI+VGHA++ND+Q LML HP MIRDT +YR YMR G KL P+ LK LA + L IQ G+HDS +DAR + LY+ WEK +R + Sbjct: 67 IDTSLIVAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEHDSVEDARITLELYKRAMGPWEKAIRAS 241
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|675162553|ref|XP_008890161.1| (hypothetical protein PPTG_00518 [Phytophthora parasitica INRA-310] >gi|568109454|gb|ETN24061.1| hypothetical protein PPTG_00518 [Phytophthora parasitica INRA-310]) HSP 1 Score: 204.912 bits (520), Expect = 2.461e-60 Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270 ++ SL VG+DCEMVGVG GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+ L+ A+ C+ +V L++ KI+VGHALKND Q LM P +IRDTA YR YMR G KL P+ LK+L + LG EIQ G+HDS +DARAA+ LY+ ++ WEK LR Sbjct: 114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|567971795|gb|ETK96794.1| (hypothetical protein L915_00583 [Phytophthora parasitica] >gi|570998587|gb|ETP54767.1| hypothetical protein F442_00601 [Phytophthora parasitica P10297]) HSP 1 Score: 204.527 bits (519), Expect = 2.541e-60 Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270 ++ SL VG+DCEMVGVG GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+ L+ A+ C+ +V L++ KI+VGHALKND Q LM P +IRDTA YR YMR G KL P+ LK+L + LG EIQ G+HDS +DARAA+ LY+ ++ WEK LR Sbjct: 114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|570337824|gb|ETO85772.1| (hypothetical protein F444_00620 [Phytophthora parasitica P1976]) HSP 1 Score: 204.527 bits (519), Expect = 2.625e-60 Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0 Query: 97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270 ++ SL VG+DCEMVGVG GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+ L+ A+ C+ +V L++ KI+VGHALKND Q LM P +IRDTA YR YMR G KL P+ LK+L + LG EIQ G+HDS +DARAA+ LY+ ++ WEK LR Sbjct: 114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286 The following BLAST results are available for this feature:
BLAST of EWM28509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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