EWM28509.1, cds2162 (CDS) Nannochloropsis gaditana

Overview
NameEWM28509.1
Unique Namecds2162
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1061931..1062818 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28509.1
Productrna exonuclease 4
Orig transcript idgnl|cribi|Naga_100131g4.7454.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1061931..1062818 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR006055Exonuclease
Homology
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|585110926|gb|EWM28509.1| (rna exonuclease 4 [Nannochloropsis gaditana])

HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295
            MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP
Sbjct:    1 MSNWERLQIKILKAEEERVKKKAAASNIGAGTSQKPSMSDLSQGKPTQIARSAPKHKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|553191718|ref|XP_005855440.1| (rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293621|gb|EKU20921.1| rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 363.614 bits (932), Expect = 2.844e-125
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0
Query:  119 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGMQAP 295
            SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDG+QAP
Sbjct:    1 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGVQAP 177          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|299469651|emb|CBN76505.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 229.565 bits (584), Expect = 1.175e-68
Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 0
Query:   94 MTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKEL 269
            +T  EK+ YV LDCEMVGVG GG RSALAR  LVD+DG  IYD+HV P ER+TDFRT+VSGVKA HLK  + L++C  +VA ++K K++VGHAL NDL+ LM+ HP    RDTA YR Y ++HGK GGKLRPR LK L+ + L   IQ G+H+ A+DA+AAM LY+  R EWEK L
Sbjct:  265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKLARFEWEKSL 440          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|1173941123|gb|OQR90362.1| (RNA exonuclease 4 [Thraustotheca clavata])

HSP 1 Score: 206.068 bits (523), Expect = 1.641e-61
Identity = 93/174 (53.45%), Postives = 126/174 (72.41%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270
            ++ S  V +DCEMVGVG  G RS LAR ++VDFDG V+YD+HV+P ER+TDFRT VSG+++KHL+ A+   +C  +VA++ + KI+VGHAL+ND+Q LML HP  MIRDT +YR YMR     G KL P+ LK+LAL+ L   IQ G+HDS +DAR ++ LY+     WEK ++
Sbjct:   60 IDTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEHDSVEDARTSLELYKHAMAPWEKAIK 232          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|635362491|emb|CCI48774.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 203.756 bits (517), Expect = 8.143e-61
Identity = 95/175 (54.29%), Postives = 128/175 (73.14%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRK 271
            ++KS  + +DCEMVGVG  G++ ALAR +++DFDG V++D  V P E++TD+RT VSG++ +  K A+S  +C+ +V  L+K KI+VGHALKND Q LML HP    RDTARYR YMR + K G KL PR LK LA +FL   IQEG+HDS +DARAA+ LY+ Q+ +WEK L++
Sbjct:   43 IKKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQALMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYLQE 216          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|635362490|emb|CCI48773.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 204.912 bits (520), Expect = 8.907e-61
Identity = 95/174 (54.60%), Postives = 127/174 (72.99%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270
            ++KS  + +DCEMVGVG  G++ ALAR +++DFDG V++D  V P E++TD+RT VSG++ +  K A+S  +C+ +V  L+K KI+VGHALKND Q LML HP    RDTARYR YMR + K G KL PR LK LA +FL   IQEG+HDS +DARAA+ LY+ Q+ +WEK L+
Sbjct:   88 IKKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQALMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYLQ 260          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|813219258|ref|XP_012211006.1| (hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65] >gi|641523425|gb|KDO18280.1| hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 203.756 bits (517), Expect = 1.010e-60
Identity = 97/176 (55.11%), Postives = 124/176 (70.45%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKT 272
            ++ SL V +DCEMVGVG  GKRS LAR ++VDFDG V+YDEHV+P ER+TDFRT VSG++AK L+ AL  ++C   VA +  GKI+VGHA++ND+Q LML HP  MIRDT +YR YMR     G KL P+ LK LA + L   IQ G+HDS +DAR  + LY+     WEK +R +
Sbjct:   67 IDTSLIVAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEHDSVEDARITLELYKRAMGPWEKAIRAS 241          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|675162553|ref|XP_008890161.1| (hypothetical protein PPTG_00518 [Phytophthora parasitica INRA-310] >gi|568109454|gb|ETN24061.1| hypothetical protein PPTG_00518 [Phytophthora parasitica INRA-310])

HSP 1 Score: 204.912 bits (520), Expect = 2.461e-60
Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270
            ++ SL VG+DCEMVGVG  GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+  L+ A+    C+ +V  L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR     G KL P+ LK+L  + LG EIQ G+HDS +DARAA+ LY+ ++  WEK LR
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|567971795|gb|ETK96794.1| (hypothetical protein L915_00583 [Phytophthora parasitica] >gi|570998587|gb|ETP54767.1| hypothetical protein F442_00601 [Phytophthora parasitica P10297])

HSP 1 Score: 204.527 bits (519), Expect = 2.541e-60
Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270
            ++ SL VG+DCEMVGVG  GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+  L+ A+    C+ +V  L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR     G KL P+ LK+L  + LG EIQ G+HDS +DARAA+ LY+ ++  WEK LR
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286          
BLAST of EWM28509.1 vs. NCBI_GenBank
Match: gi|570337824|gb|ETO85772.1| (hypothetical protein F444_00620 [Phytophthora parasitica P1976])

HSP 1 Score: 204.527 bits (519), Expect = 2.625e-60
Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 0
Query:   97 MEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELR 270
            ++ SL VG+DCEMVGVG  GK S LAR ++VD+DG V+YD+HVRP E++TDFRT VSG+K+  L+ A+    C+ +V  L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR     G KL P+ LK+L  + LG EIQ G+HDS +DARAA+ LY+ ++  WEK LR
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMRRK-MNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286          
The following BLAST results are available for this feature:
BLAST of EWM28509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110926|gb|EWM28509.1|0.000e+0100.00rna exonuclease 4 [Nannochloropsis gaditana][more]
gi|553191718|ref|XP_005855440.1|2.844e-12599.44rna exonuclease 4, partial [Nannochloropsis gadita... [more]
gi|299469651|emb|CBN76505.1|1.175e-6860.23conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173941123|gb|OQR90362.1|1.641e-6153.45RNA exonuclease 4 [Thraustotheca clavata][more]
gi|635362491|emb|CCI48774.1|8.143e-6154.29unnamed protein product [Albugo candida][more]
gi|635362490|emb|CCI48773.1|8.907e-6154.60unnamed protein product [Albugo candida][more]
gi|813219258|ref|XP_012211006.1|1.010e-6055.11hypothetical protein SPRG_16319 [Saprolegnia paras... [more]
gi|675162553|ref|XP_008890161.1|2.461e-6055.17hypothetical protein PPTG_00518 [Phytophthora para... [more]
gi|567971795|gb|ETK96794.1|2.541e-6055.17hypothetical protein L915_00583 [Phytophthora para... [more]
gi|570337824|gb|ETO85772.1|2.625e-6055.17hypothetical protein F444_00620 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2170rna2170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications